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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6799#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 763 fasta sequence
[TAAGAGTACTTCGACTGGAAGCAAAACAATAATACCTCGTTAAGGTTGATAGCGTAAAAATCACAAGCTTAACTCCTGCGTGCGTTGTATAAAGCACGTGCGCAATAGTGTGAGGAACGGGGCAAGGAACGAACGATATCGCAAGGCTTAGCTAGGAAAAAGGGATAAACAGGAAGGGTATTAAATATGGGCAAGAAAGCATTAAGGAAAATTCATTCGATCGTTGCTGGAATTGCAAATGGGACGAATGAAGGTGGCAAAATGTGCCGGCAGTAGTAAAGTATTGCAATTGAGTAAAGGTGGAAAGAGGTGCAAAATATCATCACAACGTTGTTACCGACGGAATTGTTGTTAGAGTAGGTCTCGACTACTACGTGTGAGCAAAAAAAAACTATCGACTGGCCAAACTGGATGTGCAAAATGTAAAATTACAGCTTTTTCAGCCAACTTGAAGGTGGAACAGAAGGAAAGGGGGAACGATTTTTAGAAACTGTGTTCCGACAACCATTACATTGGCCTAGCGGATATTATTTGGTAAGACTTATTTCGACAGCTATTGCTTCCATATTTACTCGTAGACTCGGCCTGAATCGTTTTCGAAAGGGAGTTGAAAAAAAAAAACAACCGCTCAAATATTAAAGGATAATAGGAACAGTTGGTAAAATTGTAATTATTTAATTCGTCCAACTGTAACGACACAGACTCGTGGTAAACTAATTCGTTCACCGGAAAGGTTTAAAATGCATCACATGTGCGAAACAGA]
[+] EMBL BX618899 [TAAGAGTACTTCGACTGGAAGCAAAACAATAATACCTCGTTAAGGTTGATAGCGTAAAAATCACAAGCTTAACTCCTGCGTGCGTTGTATAAAGCACGTGCGCAATAGTGTGAGGAACGGGGCAAGGAACGAACGATATCGCAAGGCTTAGCTAGGAAAAAGGGATAAACAGGAAGGGTATTAAATATGGGCAAGAAAGCATTAAGGAAAATTCATTCGATCGTTGCTGGAATTGCAAATGGGACGAATGAAGGTGGCAAAATGTGCCGGCAGTAGTAAAGTATTGCAATTGAGTAAAGGTGGAAAGAGGTGCAAAATATCATCACAACGTTGTTACCGACGGAATTGTTGTTAGAGTAGGTCTCGACTACTACGTGTGAGCAAAAAAAAACTATCGACTGGCCAAACTGGATGTGCAAAATGTAAAATTACAGCTTTTTCAGCCAACTTGAAGGTGGAACAGAAGGAAAGGGGGAACGATTTTTAGAAACTGTGTTCCGACAACCATTACATTGGCCTAGCGGATATTATTTGGTAAGACTTATTTCGACAGCTATTGCTTCCATATTTACTCGTAGACTCGGCCTGAATCGTTTTCGAAAGGGAGTTGAAAAAAAAAAACAACCGCTCAAATATTAAAGGATAATAGGAACAGTTGGTAAAATTGTAATTATTTAATTCGTCCAACTGTAACGACACAGACTCGTGGTAAACTAATTCGTTCACCGGAAAGGTTTAAAATGCATCACATGTGCGAAACAGA]
consensusID : consensus_6799#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 733 fasta sequence
[GGCAAGAATCCGGCACGAGGAGACTTATTTCGACAGCTATTGCTTCCATATTTACTCGTAGACTCGGCCTGAATCGTTTTCGAAAGGGAGTTGAAAAAAAAAACAACCGCTCAAATATTAAAGGATAATAGGAACAGTTGGTAAAATTGTAATTATTTAATTCGTCCAACTGTAACGACACAGACTCGTGGTAAACTAATTCGTTCACCGGAAAGGTTTAAAATGCATCACATGTGCGAAACAGAAGCAGATAAAAACATTCCTTCCGTAAAATTATTTGATTTTAGAACGACTACAGCGAAAAACTAGGTTCCTCATTTACTTCGACCGTTAGGGATGTTATATGATATGAAAAAGGGTTTTTTTTTTTATTGTAAGGCAAATTATTGTGAATCTTTTACATCACGCATCCATAATCTTGCTGTAGCTCAACCGAGCTTAAACTGATCTTTTGCAGAAGCGTTTAATAGTCACATCACAGCTAGGAAATTGAAGAAAAAAAAACTAGAATGCTAGGAAATGGGATACCGTACTTACACCGATGAGCGTGGTCAATAGCGCACATTATGCAGCCAATTAGCAAGAAGCGTAGAATGCAAAAACCAAAACAAAAAAACTAGAACTCGAAAGTGCCACAGAACTTAAGTTAAAACAGTGCCACGTGGCATTACG-CAAATGCACGTGGTAGATGCAGCAAATGAAGCGTG-TGATTNATTGTACGGTGGATGGCAGT]
[+] EMBL BX467833 [GGCAAGAATCCGGCACGAGGAGACTTATTTCGACAGCTATTGCTTCCATATTTACTCGTAGACTCGGCCTGAATCGTTTTCGAAAGGGAGTTGAAAAAAAAAACAACCGCTCAAATATTAAAGGATAATAGGAACAGTTGGTAAAATTGTAATTATTTAATTCGTCCAACTGTAACGACACAGACTCGTGGTAAACTAATTCGTTCACCGGAAAGGTTTAAAATGCATCACATGTGCGAAACAGAAGCAGATAAAAACATTCCTTCCGTAAAATTATTTGATTTTAGAACGACTACAGCGAAAAACTAGGTTCCTCATTTACTTCGACCGTTAGGGATGTTATATGATATGAAAAAGGGTTTTTTTTTTTATTGTAAGGCAAATTATTGTGAATCTTTTACATCACGCATCCATAATCTTGCTGTAGCTCAACCGAGCTTAAACTGATCTTTTGCAGAAGCGTTTAATAGTCACATCACAGCTAGGAAATTGAAGAAAAAAAAACTAGAATGCTAGGAAATGGGATACCGTACTTACACCGATGAGCGTGGTCAATAGCGCACATTATGCAGCCAATTAGCAAGAAGCGTAGAATGCAAAAACCAAAACAAAAAAACTAGAACTCGAAAGTGCCACAGAACTTAAGTTAAAACAGTGCCACGTGGCATTACG CAAATGCACGTGGTAGATGCAGCAAATGAAGCGTG TGATTNATTGTACGGTGGATGGCAG ]
[+] EMBL BX626356 [ CATCACATGTGCGAAACAGAAGCAGATAAAAACATTCCTTCCGTAAAATTATTTGATTTTAGAACGACTACAGCGAAAAACTAGGTTCCTCATTTACTTCGACCGTTAGGGATGTTATATGATATGAAAAAGGGTTTTTTTTTTTATTGTAAGGCAAATTATTGTGAATCTTTTACATCACGCATCCATAATCTTGCTGTAGCTCAACCGAGCTTAAACTGATNTTTTGCAGAAGCGTTTAATAGTCACATCACAGCTAGGAAATTGAAGAAAAAAAAANTAGAATGTTAGGAAATGGGATATCGTACTTACACCGATGAGCGNGGTCAATAGCGCACATTATGCAGTCAATTAGCAAGAAGCGTATAATGCAAAAA CAAAATAAAAAAACTAGAACTCGAAAGTGCCACAGAACTTAAGTTAAAACAGTGCCACGCGGNATTACGCCAAATGCACGTGGTAGATGCAGCAAATGAAGCGNGTTGATT ATTGTAC NTGGATGGCAGT]
consensusID : consensus_6799#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 494 fasta sequence
[CCCCCGAGGTTTTAACTCCTGCGTGCGTTGTATAAGCACGTGCGCAATAGCTGTGAGGAACGGGGCAAGGAACGAACGATATCGCAAGGCTTAGCTAGGAAAAAGGGATAAACAGGAAGGGTATTAAATATGGGCAAGAAAGCATTAAGGAAAATTCATTCGATCGTTGCTGGAATTGCAAATGGGACGAATGAAGGTGGCAAAATGTGCCGGCAGTAGTAAAGTATTGCAATTGAGTAAAGGTGGCAAGAGGTGCAAAATATCATCACAACGTTGTTACCGACGGAATTGTTGTTAGAGTAGGTCTCGACTACTACGTGTGAGCAAAAAAAAACTATCGACTGGCCAAACTGGATGTGCNAAATGTAAATTACAGCTTTTTTCAGCCAACTTGAAGGTGGAACAGAAGGAAAGGGGGAACGATTTTTAGAAACTGTGTTCCGACAACCATTACATTGGCTANCGGATATTATTTGGTAAGACTTATTTCGACA]
[+] EMBL AL692626 [CCCCCGAGGTTTTAACTCCTGCGTGCGTTGTATAAGCACGTGCGCAATAGCTGTGAGGAACGGGGCAAGGAACGAACGATATCGCAAGGCTTAGCTAGGAAAAAGGGATAAACAGGAAGGGTATTAAATATGGGCAAGAAAGCATTAAGGAAAATTCATTCGATCGTTGCTGGAATTGCAAATGGGACGAATGAAGGTGGCAAAATGTGCCGGCAGTAGTAAAGTATTGCAATTGAGTAAAGGTGGCAAGAGGTGCAAAATATCATCACAACGTTGTTACCGACGGAATTGTTGTTAGAGTAGGTCTCGACTACTACGTGTGAGCAAAAAAAAACTATCGACTGGCCAAACTGGATGTGCNAAATGTAAATTACAGCTTTTTTCAGCCAACTTGAAGGTGGAACAGAAGGAAAGGGGGAACGATTTTTAGAAACTGTGTTCCGACAACCATTACATTGGCTANCGGATATTATTTGGTAAGACTTATTTCGACA]
consensusID : consensus_6799#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 442 fasta sequence
[GAGGCAGAATCGCCACGAGGTGTAATTATTTAATTCGTCCAACTGTAACGACACAGACTCGTGGTAAACTAATTCGTTCACCGGAAAGGTTTAAAATGCATCACATGTGCGAAACAGAAGCAGATAAAAACATTCCTTCCGTAAAATTATTTGATTTTAGAACGACTACAGCGAAAAACTAGGTTCCTCATTTACTTCGACCGTTAGGGATGTTATATGATATGAAAAAGGGTTTTGTTNTTTTATTGTAAGGCAAATTATTGTGAATCTTTTACATCACGCATCCATAATCTTGCTGTAGCTCAACCGAGCTTAAACTGATCTTTTGCAGAAGCGTTNTAATAGTCACATCAGCAGCTNGGAAAGTTGAGAGAANACAAAAACTAGAATGCTAGGAAATGGGATACCGTANCTTACACCGATGAGCGTGGCTCNATAGCGC]
[+] EMBL BX469026 [GAGGCAGAATCGCCACGAGGTGTAATTATTTAATTCGTCCAACTGTAACGACACAGACTCGTGGTAAACTAATTCGTTCACCGGAAAGGTTTAAAATGCATCACATGTGCGAAACAGAAGCAGATAAAAACATTCCTTCCGTAAAATTATTTGATTTTAGAACGACTACAGCGAAAAACTAGGTTCCTCATTTACTTCGACCGTTAGGGATGTTATATGATATGAAAAAGGGTTTTGTTNTTTTATTGTAAGGCAAATTATTGTGAATCTTTTACATCACGCATCCATAATCTTGCTGTAGCTCAACCGAGCTTAAACTGATCTTTTGCAGAAGCGTTNTAATAGTCACATCAGCAGCTNGGAAAGTTGAGAGAANACAAAAACTAGAATGCTAGGAAATGGGATACCGTANCTTACACCGATGAGCGTGGCTCNATAGCGC]
consensusID : consensus_6799#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 379 fasta sequence
[CCGAGGTTTACTCTGCGTGCGTTGTACTAAAAAGCACGTGCGCAATAGTGTGAGGAACCGGGGGCCCAAGGAACGAACGATATCGCAAGGCTTAGCTAGGAAAAAGGGATAAACAGGAAGGGTATTAAATATGGGCAAGAAAGCATTAAGGAAAATTCATTCGATCGTTGCTGGAATTGCAAATGGGGACGAATGAAAGGTGGCAAAAATGTGCCGGCCAGGTAGTAAAGGTATTGCAATTGAGGTTAAAGGTGGAAAGAAGGTGCAAAAATATCATTCACAACGGTTTGTTACCGACGGAATTGTTGTTAGAGTAGGTCTCGACTTACTACGGTTGTGAGGCAAAAAAAAAAATATCGACTGGGCAAAATGGGATGTT]
[+] EMBL AL696151 [CCGAGGTTTACTCTGCGTGCGTTGTACTAAAAAGCACGTGCGCAATAGTGTGAGGAACCGGGGGCCCAAGGAACGAACGATATCGCAAGGCTTAGCTAGGAAAAAGGGATAAACAGGAAGGGTATTAAATATGGGCAAGAAAGCATTAAGGAAAATTCATTCGATCGTTGCTGGAATTGCAAATGGGGACGAATGAAAGGTGGCAAAAATGTGCCGGCCAGGTAGTAAAGGTATTGCAATTGAGGTTAAAGGTGGAAAGAAGGTGCAAAAATATCATTCACAACGGTTTGTTACCGACGGAATTGTTGTTAGAGTAGGTCTCGACTTACTACGGTTGTGAGGCAAAAAAAAAAATATCGACTGGGCAAAATGGGATGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6799#2 ------------------------------------------------------------
consensus_6799#4 ------------------------------------------------------------
consensus_6799#0 ------------------------------------------------------------
consensus_6799#1 GGCAAGAATCCGGCACGAGGAGACTTATTTCGACAGCTATTGCTTCCATATTTACTCGTA 60
consensus_6799#3 ------------------------------------------------------------
consensus_6799#2 ------------------------------------------------------------
consensus_6799#4 ------------------------------------------------------------
consensus_6799#0 ----------------------------TAAGAGTACTTCGACTGGAAGCAAAACAATAA 32
consensus_6799#1 GACTCGGCCTGAATCGTTTTCGAAAGGGAGTTGAAAAAAAAAACAACCGCTCAAATATTA 120
consensus_6799#3 ------------------------------------------------------------
consensus_6799#2 --------------------------CCCCCGAGGTTTTAACTCCTGCGTGCGTTGTAT- 33
consensus_6799#4 -----------------------------CCGAGGTTT--ACTC-TGCGTGCGTTGTACT 28
consensus_6799#0 TACCTCGTTAAGGTTGATAGCGTAAAAATCACAAGCTT-AACTCCTGCGTGCGTTGTAT- 90
consensus_6799#1 AAGGATAATAGGAACAGTTGGTA-AAATTGTAATTATTTAATTCGTCCAACTGTAACGAC 179
consensus_6799#3 --------GAGGCAGAATCGCCACGAGGTGTAATTATTTAATTCGTCCAACTGTAACGAC 52
* ** * ** * * **
consensus_6799#2 ---AAGCACGTGCGCAATAGCTGTGAGGAACGGGG----CAAGGAACGAACGATAT-CGC 85
consensus_6799#4 AAAAAGCACGTGCGCAATAG-TGTGAGGAACCGGGGGCCCAAGGAACGAACGATAT-CGC 86
consensus_6799#0 --AAAGCACGTGCGCAATAG-TGTGAGGAACGGGG----CAAGGAACGAACGATAT-CGC 142
consensus_6799#1 A-CAGACTCGTGGTAAACTAATTCGTTCACCGGAAAGG-TTTAAAATGCATCACATGTGC 237
consensus_6799#3 A-CAGACTCGTGGTAAACTAATTCGTTCACCGGAAAGG-TTTAAAATGCATCACATGTGC 110
* * **** ** * * * * * ** * * * ** **
consensus_6799#2 AAGGCTTAGCTAGGAAAAAGGGATAAA-CAGGAAGGGTATTAAATATGGGCAAGAAAGCA 144
consensus_6799#4 AAGGCTTAGCTAGGAAAAAGGGATAAA-CAGGAAGGGTATTAAATATGGGCAAGAAAGCA 145
consensus_6799#0 AAGGCTTAGCTAGGAAAAAGGGATAAA-CAGGAAGGGTATTAAATATGGGCAAGAAAGCA 201
consensus_6799#1 GAAACAGAAGCAGATAAAAACATTCCTTCCGTAAAATTATTTGATTTTAGAACGACTACA 297
consensus_6799#3 GAAACAGAAGCAGATAAAAACATTCCTTCCGTAAAATTATTTGATTTTAGAACGACTACA 170
* * * ** **** * * * ** **** ** * * * ** **
consensus_6799#2 TTAAGGAA--AATTCATTCGATCGTTGCTGGAATTGCAAATGGG--ACGA-ATGAA-GGT 198
consensus_6799#4 TTAAGGAA--AATTCATTCGATCGTTGCTGGAATTGCAAATGGGG-ACGA-ATGAAAGGT 201
consensus_6799#0 TTAAGGAA--AATTCATTCGATCGTTGCTGGAATTGCAAATGGG--ACGA-ATGAA-GGT 255
consensus_6799#1 GCGAAAAACTAGGTTCCTCATTTACTTCGACCGTTAGGGATGTTATATGATATGAAAAAG 357
consensus_6799#3 GCGAAAAACTAGGTTCCTCATTTACTTCGACCGTTAGGGATGTTATATGATATGAAAAAG 230
* ** * * ** * * * ** *** * ** *****
consensus_6799#2 GGCAAAA-TGTGCCGGC--AGTAGTAAAG-TATTGCAA----TTGAG--TAAAGGTGGCA 248
consensus_6799#4 GGCAAAAATGTGCCGGCCAGGTAGTAAAGGTATTGCAA----TTGAGGTTAAAGGTGGAA 257
consensus_6799#0 GGCAAAA-TGTGCCGGC--AGTAGTAAAG-TATTGCAA----TTGAG--TAAAGGTGGAA 305
consensus_6799#1 GGTTTT-TTTTTTTATT--GTAAGGCAAATTATTGTGAATCTTTTACATCACGCATCCAT 414
consensus_6799#3 GGTTTTGTTNTTTTATT--GTAAGGCAAATTATTGTGAATCTTTTACATCACGCATCCAT 288
** * * ** ** ***** * ** * * *
consensus_6799#2 AGA---GGTGCAAAA-TATCAT-CACAACG--TTGTTACCGACGGAATTGTTGTTAGAGT 301
consensus_6799#4 AGAA--GGTGCAAAAATATCATTCACAACGGTTTGTTACCGACGGAATTGTTGTTAGAGT 315
consensus_6799#0 AGA---GGTGCAAAA-TATCAT-CACAACG--TTGTTACCGACGGAATTGTTGTTAGAGT 358
consensus_6799#1 AATCTTGCTGTAGCTCAACCGAGCTTAAAC--TGATCTTTTGCAGAAGCGTTT-AATAGT 471
consensus_6799#3 AATCTTGCTGTAGCTCAACCGAGCTTAAAC--TGATCTTTTGCAGAAGCGTTNTAATAGT 346
* * ** * * * * ** * * * *** *** * ***
consensus_6799#2 AGGTCTCGACT-ACTACG--TGTGAG--CAAAA-AAAAACTATCGACTGGCCAAACTGGA 355
consensus_6799#4 AGGTCTCGACTTACTACGGTTGTGAGGCAAAAA-AAAAAATATCGACTGGGCAAAATGGG 374
consensus_6799#0 AGGTCTCGACT-ACTACG--TGTGAG--CAAAA-AAAAACTATCGACTGGCCAAACTGGA 412
consensus_6799#1 CA-CATCA-CA-GCTAGGAAATTGAAGAAAAAA---AAACTAGAATGCTAGGAAATGGGA 525
consensus_6799#3 CA-CATCAGCA-GCTNGGAAAGTTGAGAGAANACAAAAACTAGAATGCTAGGAAATGGGA 404
** * ** * * ** * *** ** *** **
consensus_6799#2 TGT-GCNAAATGTAAATTACAGCTTTTTTCAGCCAACTTGAAGGTGGAACAGAAGGAAAG 414
consensus_6799#4 -AT-GTT----------------------------------------------------- 379
consensus_6799#0 TGT-GCAAAATGTAAAATTACAGCTTTTTCAGCCAACTTGAAGGTGGAACAGAAGGAAAG 471
consensus_6799#1 TACCGTAC-TTACACCGATGAGCGTGG-TCAATAGCGCACATTATGCAGCCAATTAGCAA 583
consensus_6799#3 TACCGTANCTTACACCGATGAGCGTGGCTCNATAGCGC---------------------- 442
*
consensus_6799#2 GGGGAACGATTTTTAGAAACTGTGTTCCGACAACCATTACATTGGC-TANCGGATATTAT 473
consensus_6799#4 ------------------------------------------------------------
consensus_6799#0 GGGGAACGATTTTTAGAAACTGTGTTCCGACAACCATTACATTGGCCTAGCGGATATTAT 531
consensus_6799#1 GAAGCGTAGAATGCAAAAACCAAAACAAAAAAACTAGAACTCGAAAGTGCCACAGAACTT 643
consensus_6799#3 ------------------------------------------------------------
consensus_6799#2 TTGGTAAGACTTATTTCGACA--------------------------------------- 494
consensus_6799#4 ------------------------------------------------------------
consensus_6799#0 TTGGTAAGACTTATTTCGACAGCTATTGCTTCCATATTTACTCGTAGACTCGGCCTGAAT 591
consensus_6799#1 AAGTTAAAACAGTGCCACGTGGCATTACGCAAATGCACGTGGTAGATGCAGCAAATGAAG 703
consensus_6799#3 ------------------------------------------------------------
consensus_6799#2 ------------------------------------------------------------
consensus_6799#4 ------------------------------------------------------------
consensus_6799#0 CGTTTTCGAAAGGGAGTTGAAAAAAAAAAACAACCGCTCAAATATTAAAGGATAATAGGA 651
consensus_6799#1 CGTGTGATTNATTGTACGGTGGATGGCAGT------------------------------ 733
consensus_6799#3 ------------------------------------------------------------
consensus_6799#2 ------------------------------------------------------------
consensus_6799#4 ------------------------------------------------------------
consensus_6799#0 ACAGTTGGTAAAATTGTAATTATTTAATTCGTCCAACTGTAACGACACAGACTCGTGGTA 711
consensus_6799#1 ------------------------------------------------------------
consensus_6799#3 ------------------------------------------------------------
consensus_6799#2 ----------------------------------------------------
consensus_6799#4 ----------------------------------------------------
consensus_6799#0 AACTAATTCGTTCACCGGAAAGGTTTAAAATGCATCACATGTGCGAAACAGA 763
consensus_6799#1 ----------------------------------------------------
consensus_6799#3 ----------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||