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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6817#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1503 fasta sequence
[TGAACCCATTTCCTTCTTCCTTTCCGTTTCTATCGGTTGGTCAGCCTCTCATTTGGAAACGGTCACGTACGTCACGATTTGTTTGAATGGCGACAAAATGGTGGTTAGTATGGAATGGGAAGCGTTTTGAAAGATAAGCGTGTAGGTGTGTGTTGGAAAGGAACATAAAAGTTTAATGGAACATTTAAATGTATCCTTTTCCGATGATTTATGTGACGAAACGAGATATTCTCCTTACGAATTGTTGGCTTATACACAGCTTTGAGGTTGTATAATTTCAAAATGAATTACATATATGTTGTGTTCATTAAAAACGTTTTCAAACTGGAAAGTAATATTATGAAGAAACAAACGAATTTTAGTCTTCCAATACATTTGTAAACCGAAAATCCTGAAATGGTTAGCTTGATTGGCACTTATCCAGCAATTAGTTATCAAATGAAAAGCTTACTTGATTTACATTCATTGAACAATGGTTTCTTATCTATTACTGCCCACTCACACACATTCTCCATACTACAGTGAGCTACAACAGTAAGCTTAGAGCTGGTGAGGACAAAATGGAAAAGCCGAGTTTATTGAATCAAACATTTGATGTAAAACAAGTATAACTAAGGACCTATACTCTTTATAACCTACCACGTATATACATACTTAGAATAGTTCAACAAAGAAGGGTAAGGAACTAAGGACATTAAGAAGCGATCGGGAGTTCTCTGTAGACATTAACCCATCCCGTAACCCGTGTGTTATTCAGGTCGAATGTTTTCTGCCCTGTTGGCATCGGACTCTCTACAGACAGCTTGAGTGAAGGCAGCTCATAAAAAAAAAAACAAAACAAAAACAAATAGTTTGACAACCCCTTACATTCCCCGAAACACGTAGATCGCAGATGGCAAGGTGAATTTGTTCTTAACTGTACTGTGCGCCCGTGTTGGGTGTTCTAGCGCGTTCGAGTTCAATCACTCGTGTTAGTAGTGTAATTTTCTTGCAGTTTAGTGCATTTTTCCCCGTCGAGCAGTGTACAAGACTCGATAGTGGAAAGAGTAGGGATGAAAGGCGTGGTGAAATGTGGCAGCCAGAAGTATCGACAGGAAGACAACAACAACATAAAGAAACACATCACGTACTGATCAAAGGATCGACTATTTATCCAATGAATGGTAATTAGGGATGAAGAAAATTGTACTCGATATAT--TATATATATACACGCATACATACATACATGCATACATTCATACAATACGGTGGTTATGATATGAAACACTTAGTACAGTGGGTGTGGGTAATGGGCTGAATCCCGATACATTCTTGATGGGTAG-TTCGGTGCATTGTATTGCAGCCCTACGATTGCAGATCGCTTCCCGGATGTGTGAGTGTGTATGGACAATGTGCTGGAGCAAATGGGAGTTCCGGTGCGGTCGGGGTGAAGCAAAGTGAAAGTGTTACGTTATTTACGAAAAATAAATCGAAGATTTCTGAGAAAACTTACCGAGGACCGTG]
[+] EMBL BX612379 [TGAACCCATTTCCTTCTTCCTTTCCGTTTCTATCGGTTGGTCAGCCTCTCATTTGGAAACGGTCACGTACGTCACGATTTGTTTGAATGGCGACAAAATGGTGGTTAGTATGGAATGGGAAGCGTTTTGAAAGATAAGCGTGTAGGTGTGTGTTGGAAAGGAACATAAAAGTTTAATGGAACATTTAAATGTATCCTTTTCCGATGATTTATGTGACGAAACGAGATATTCTCCTTACGAATTGTTGGCTTATACACAGCTTTGAGGTTGTATAATTTCAAAATGAATTACATATATGTTGTGTTCATTAAAAACGTTTTCAAACTGGAAAGTAATATTATGAAGAAACAAACGAATTTTAGTCTTCCAATACATTTGTAAACCGAAAATCCTGAAATGGTTAGCTTGATTGGCACTTATCCAGCAATTAGTTATCAAATGAAAAGCTTACTTGATTTACATTCATTGAACAATGGTTTCTTATCTATTACTGCCCACTCACACACATTCTCCATACTACAGTGAGCTACAACAGTAAGCTTAGAGCTGGTGAGGACAAAATGGAAAAGCCGAGTTTATTGAATCAAACATTTGATGTAAAACAAGTATAACTAAGGACCTATACTCTTTATAACCTACCACGTATATACATACTTAGAATAGTTCAACAAAGAAGGGTAAGGAACTAAGGACATTAAGAAGCGATCGGGAGTTCTCTGTAGACATTAACCCATCCCGTAACCCGTGTGTTATTCAGGTCGAATGTTTTCTGCCCTGTTGGCATCGGACTCTCTACAGACAGCTTGAGTGAAG ]
[+] EMBL BX615761 [ TTACGAATTGTTGGCTTATACACAGCTTTGAGGTTGTATAATTTCAAAATGAATTACATATATGTTGTGTTCATTAAAAACGTTTTCAAACTGGAAAGTAATATTATGAAGAAACAAACGAATTTTAGTCTTCCAATACATTTGTAAACCGAAAATCCTGAAATGGTTAGCTTGATTGGCACTTATCCAGCAATTAGTTATCAAATGAAAAGCTTACTTGATTTACATTCATTGAACAATGGTTTCTTATCTATTACTGCCCACTCACACACATTCTCCATACTACAGTGAGCTACAACAGTAAGCTTAGAGCTGGTGAGGACAAAATGGAAAAGCCGAGTTTATTGAATCAAACATTTGATGTAAAACAAGTATAACTAAGGACCTATACTCTTTATAACCTACCACGTATATACATACTTAGAATAGTTCAACAAAGAAGGGTAAGGAACTAAGGACATTAAGAAGCGATCGGGAGTTCTCTGTAGACATTAACCCATCCCGTAACCCGTGTGTTATTCAGGTCGAATGTTTTCTGCCCTGTTGGCATCGGACTCTCTACAGACAGCTTGAGTGAA ]
[+] EMBL BX609239 [ TTGTGTTCATTAAAAACGTTTTCAAACTGGAAAGTAATATTATGAAAAAACAAACGAATTTTAGTCTTCCAATACATTTGTAAACCGAAAATCCTGAAATGGTTAGCTTGA ]
[+] EMBL BX616522 [ TGTAGACATTAACCCATCCCGTAACCCGTGTGTTATTCAGGTCGAATGTTTTCTGCCCTGTTGGCATCGGACTCTCTACAGACAGCTTGAGTGAAGGCAGCTCATAAAAAAAAAAACAAAACAAAAACAAATAGTTTGACAACCCCTTACATTCCCCGAAACACGTAGATCGCAGATGGCAAGGTGAATTTGTTCTTAACTGTACTGTGCGCCCGTGTTGGGTGTTCTAGCGCGTTCGAGTTCAATCACTCGTGTTAGTAGTGTAATTTTCTTGCAGTTTAGTGCATTTTTCCCCGTCGAGCAGTGTACAAGACTCGATAGTGGAAAGAGTAGGGATGAAAGGCGTGGTGAAATGTGGCAGCCAGAAGTATCGACAGGAAGACAACAACAACATAAAGAAACACATCACGTACTGATCAAAGGATCGACTATTTATCCAATGAATGGTAATTAGGGATGAAGAAAATTGTACTCGATATAT TATATATATACACGCATACATACATACATGCATACATTCATACAATACGGTGGTTATGATATGAAACACTTAGTACAGTGGGTGTGGGTAATGGGCTGAATCCCGATACATTCTTGATGGGTAG TTCGGTGCATTGTATTGCAGCCCTACGATTGCAGATCGCTTCCCGGATGTGTGAGTGTGTATGGACAA ]
[+] EMBL BM620426 [ ccGATCGACTATTTATCCAATGAATGGTAATTAGGGATGAAGAAAATTGTACTCGATATATTATATATATATACACGCATACATACATACATGCATACATTCATACAATACGGTGGTTATGATATGAAACACTTAGTACAGTGGGTGTGGGTAATGGGCTGAATCCCGATATATTCTTGAT GGTAGTTTCGGTGCATTGTATTGCAGCCTAACGATTGCCGATCGCTCCTTGGATGTGTGAGTGTGTATGGACAATGTGCTGGAGCAAATGGGAGTTCCGGTGCGGTCGGGGTGAAGCAAAGTGAAAGTGTTACGTTATTTACGAAAAATAAATCGAAGATTTCTGAGAAAACTTACCGAGGACCGTG]
consensusID : consensus_6817#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 501 fasta sequence
[ATCCCCGAGGTTAATCTGAAATGGTTAGCTTGATTGGCACTTATCCAGCAATTAGTTATCAAATGAAAAGCTTACTTGATTTACATTCATTGAACAATGGTTTCTTATCTATTACTGCCACTCACACACATTCTCCATACTACAGTGAGCTACAACAGTAAGCTTAGAGCTGGTGAGGACAAAATGGAAAAGCCGAGTTTATTGAATCAAACATTTTGATGTAACAAGTATAACTAAGGACCTATACTCTTTATAACCTACCACGTATATACATACTTAGAATAGTTCAACAAAGAAGGGTAAGGAACTAAGGACATTAAGAAGCGATCGGGAGTTCTCTGTAGACATTAACCATCCCGTAAACCCGTGTGTTATTCAGGTCGAATGTTTTCTGCCCTGTTTGGCATCGGACTCTCTACAGACAGCTTGAGTGAAAGGCAGTCATATAAAAAAAAAAACAAAACNAAAACAAAATAGTTTGAAACCCTTACATTTCCCGAA]
[+] EMBL AL692426 [ATCCCCGAGGTTAATCTGAAATGGTTAGCTTGATTGGCACTTATCCAGCAATTAGTTATCAAATGAAAAGCTTACTTGATTTACATTCATTGAACAATGGTTTCTTATCTATTACTGCCACTCACACACATTCTCCATACTACAGTGAGCTACAACAGTAAGCTTAGAGCTGGTGAGGACAAAATGGAAAAGCCGAGTTTATTGAATCAAACATTTTGATGTAACAAGTATAACTAAGGACCTATACTCTTTATAACCTACCACGTATATACATACTTAGAATAGTTCAACAAAGAAGGGTAAGGAACTAAGGACATTAAGAAGCGATCGGGAGTTCTCTGTAGACATTAACCATCCCGTAAACCCGTGTGTTATTCAGGTCGAATGTTTTCTGCCCTGTTTGGCATCGGACTCTCTACAGACAGCTTGAGTGAAAGGCAGTCATATAAAAAAAAAAACAAAACNAAAACAAAATAGTTTGAAACCCTTACATTTCCCGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6817#0 TGAACCCATTTCCTTCTTCCTTTCCGTTTCTATCGGTTGGTCAGCCTCTCATTTGGAAAC 60
consensus_6817#1 ------------------------------------------------------------
consensus_6817#0 GGTCACGTACGTCACGATTTGTTTGAATGGCGACAAAATGGTGGTTAGTATGGAATGGGA 120
consensus_6817#1 ------------------------------------------------------------
consensus_6817#0 AGCGTTTTGAAAGATAAGCGTGTAGGTGTGTGTTGGAAAGGAACATAAAAGTTTAATGGA 180
consensus_6817#1 ------------------------------------------------------------
consensus_6817#0 ACATTTAAATGTATCCTTTTCCGATGATTTATGTGACGAAACGAGATATTCTCCTTACGA 240
consensus_6817#1 ------------------------------------------------------------
consensus_6817#0 ATTGTTGGCTTATACACAGCTTTGAGGTTGTATAATTTCAAAATGAATTACATATATGTT 300
consensus_6817#1 ------------------------------------------------------------
consensus_6817#0 GTGTTCATTAAAAACGTTTTCAAACTGGAAAGTAATATTATGAAGAAACAAACGAATTTT 360
consensus_6817#1 ------------------------------------------------------------
consensus_6817#0 AGTCTTCCAATACATTTGTAAACCGAAAATCCTGAAATGGTTAGCTTGATTGGCACTTAT 420
consensus_6817#1 -------------ATCCCCGAGGTTAA---TCTGAAATGGTTAGCTTGATTGGCACTTAT 44
** * ** *****************************
consensus_6817#0 CCAGCAATTAGTTATCAAATGAAAAGCTTACTTGATTTACATTCATTGAACAATGGTTTC 480
consensus_6817#1 CCAGCAATTAGTTATCAAATGAAAAGCTTACTTGATTTACATTCATTGAACAATGGTTTC 104
************************************************************
consensus_6817#0 TTATCTATTACTGCCCACTCACACACATTCTCCATACTACAGTGAGCTACAACAGTAAGC 540
consensus_6817#1 TTATCTATTACTGCC-ACTCACACACATTCTCCATACTACAGTGAGCTACAACAGTAAGC 163
*************** ********************************************
consensus_6817#0 TTAGAGCTGGTGAGGACAAAATGGAAAAGCCGAGTTTATTGAATCAAACATTT-GATGTA 599
consensus_6817#1 TTAGAGCTGGTGAGGACAAAATGGAAAAGCCGAGTTTATTGAATCAAACATTTTGATGTA 223
***************************************************** ******
consensus_6817#0 AAACAAGTATAACTAAGGACCTATACTCTTTATAACCTACCACGTATATACATACTTAGA 659
consensus_6817#1 --ACAAGTATAACTAAGGACCTATACTCTTTATAACCTACCACGTATATACATACTTAGA 281
**********************************************************
consensus_6817#0 ATAGTTCAACAAAGAAGGGTAAGGAACTAAGGACATTAAGAAGCGATCGGGAGTTCTCTG 719
consensus_6817#1 ATAGTTCAACAAAGAAGGGTAAGGAACTAAGGACATTAAGAAGCGATCGGGAGTTCTCTG 341
************************************************************
consensus_6817#0 TAGACATTAACCCATCCCGTAA-CCCGTGTGTTATTCAGGTCGAATGTTTTCTGCCCTGT 778
consensus_6817#1 TAGACATTAACC-ATCCCGTAAACCCGTGTGTTATTCAGGTCGAATGTTTTCTGCCCTGT 400
************ ********* *************************************
consensus_6817#0 T-GGCATCGGACTCTCTACAGACAGCTTGAGTGAA-GGCAGCT-CATAAAAAAAAAAACA 835
consensus_6817#1 TTGGCATCGGACTCTCTACAGACAGCTTGAGTGAAAGGCAGTCATATAAAAAAAAAAACA 460
* ********************************* ***** ***************
consensus_6817#0 AAACAAAAACAAA-TAGTTTGACAACCCCTTACATTCCCCGAAACACGTAGATCGCAGAT 894
consensus_6817#1 AAACNAAAACAAAATAGTTTGA--AACCCTTACATTTCCCGAA----------------- 501
**** ******** ******** * ********** ******
consensus_6817#0 GGCAAGGTGAATTTGTTCTTAACTGTACTGTGCGCCCGTGTTGGGTGTTCTAGCGCGTTC 954
consensus_6817#1 ------------------------------------------------------------
consensus_6817#0 GAGTTCAATCACTCGTGTTAGTAGTGTAATTTTCTTGCAGTTTAGTGCATTTTTCCCCGT 1014
consensus_6817#1 ------------------------------------------------------------
consensus_6817#0 CGAGCAGTGTACAAGACTCGATAGTGGAAAGAGTAGGGATGAAAGGCGTGGTGAAATGTG 1074
consensus_6817#1 ------------------------------------------------------------
consensus_6817#0 GCAGCCAGAAGTATCGACAGGAAGACAACAACAACATAAAGAAACACATCACGTACTGAT 1134
consensus_6817#1 ------------------------------------------------------------
consensus_6817#0 CAAAGGATCGACTATTTATCCAATGAATGGTAATTAGGGATGAAGAAAATTGTACTCGAT 1194
consensus_6817#1 ------------------------------------------------------------
consensus_6817#0 ATATTATATATATACACGCATACATACATACATGCATACATTCATACAATACGGTGGTTA 1254
consensus_6817#1 ------------------------------------------------------------
consensus_6817#0 TGATATGAAACACTTAGTACAGTGGGTGTGGGTAATGGGCTGAATCCCGATACATTCTTG 1314
consensus_6817#1 ------------------------------------------------------------
consensus_6817#0 ATGGGTAGTTCGGTGCATTGTATTGCAGCCCTACGATTGCAGATCGCTTCCCGGATGTGT 1374
consensus_6817#1 ------------------------------------------------------------
consensus_6817#0 GAGTGTGTATGGACAATGTGCTGGAGCAAATGGGAGTTCCGGTGCGGTCGGGGTGAAGCA 1434
consensus_6817#1 ------------------------------------------------------------
consensus_6817#0 AAGTGAAAGTGTTACGTTATTTACGAAAAATAAATCGAAGATTTCTGAGAAAACTTACCG 1494
consensus_6817#1 ------------------------------------------------------------
consensus_6817#0 AGGACCGTG 1503
consensus_6817#1 ---------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||