cluster # 6831

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Anopheles gambiae
cluster # 6831 cluster # 6831 Sequences # 6 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6831#0 length = 649 sequences # 2
consensus_6831#1 length = 538 sequences # 1

consensus_6831#2 length = 527 sequences # 2
consensus_6831#3 length = 413 sequences # 1

consensusID : consensus_6831#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 649
fasta sequence

                              [CCGCCCACGCGTCCGCACAAAGAAAGATTGCACGAGACAACAAGGAGAAGAAAAAAATAAAACAGCAAAAATAATCAGAGTTTCGGCGAGACCCGTTTCAAACACTGATTCAGAGAAAGAGAAACACAAAGAGACAAAGGACGATACGCATACCAGCGACGGTATCGGATCAGCAAACAGCACCAAGCAGCACTACGCAACCCAGCAGCAGCAGCAGCAGCATAAGCAACATCAACCAGCAGCCGAAATGTCCGGAGTGAACCTATCACGCAACGAGGTGGTACAGTTTGTGCTGCGTATCTCGCTGCTCTCCATCGTCACCTACTACTCGGCGAAATGGCTCATCCGCAACCTGGACCCGTCCAACAAGAGCAAAAAGAAGGCGATCGAGCATGCGGAAGAAATACTGCGAAAGCTAAGCCCAACGATGAAAAAGTCGGCACTACAAAATCTGAACGAGTACGAAATGGTCATTGCTTCGCATCTGGTGGTGCCAGAAAACATTACCGAAAGCTGGGACAGCATTGCCGGGCTGGATGATGTGTGCCAGGAGATCAAGGAAAGTCTCGTGTTTCCCGTCTGCCACCGGGACATGTTTGCTGGCTCGGCACTGTACCAGCCACCGAAGGGAGTGCTACTATACGGTCCA]

[+] EMBL BM610886             [CCGCCCACGCGTCCGCACAAAGAAAGATTGCACGAGACAACAAGGAGAAGAAAAAAATAAAACAGCAAAAATAATCAGAGTTTCGGCGAGACCCGTTTCAAACACTGATTCAGAGAAAGAGAAACACAAAGAGACAAAGGACGATACGCATACCAGCGACGGTATCGGATCAGCAAACAGCACCAAGCAGCACTACGCAACCCAGCAGCAGCAGCAGCAGCATAAGCAACATCAACCAGCAGCCGAAATGTCCGGAGTGAACCTATCACGCAACGAGGTGGTACAGTTTGTGCTGCGTATCTCGCTGCTCTCCATCGTCACCTACTACTCGGCGAAATGGCTCATCCGCAACCTGGACCCGTCCAACAAGAGCAAAAAGAAGGCGATCGAGCATGCGGAAGAAATACTGCGAAAGCTAAGCCCAACGATGAAAAAGTCGGCACTACAAAATCTGAACGAGTACGAAATGGTCATTGCTTCGCATCTGGTGGTGCCAGAAAACATTACCGAAAGCTGGGACAGCATTGCCGGGCTGGATGATGTGTGCCAGGAGATCAAGGAAAGTCTCGTGTTTCCCGTCTGCCACCGGGACATGTTTGCTGGCTCGGCACTGTACCAGCCACCGAAGGGAGTGCTACTATACGGTCCA]
[+] EMBL BM654585             [                                                                                  cCGGCGAGACCCGTTTCAAACACTGATTCAGAGAAAGAGAAACACAAAGAGACAAAGGACGATACGCATACCAGCGACGGTATCGGATCAGCAAACAGCACCAAGCAGCACTACGCAACCCAGCAGCAGCAGCAGCAGCATAAGCAACATCAACCAGCAGCCGAAATGTCCGGAGTGAACCTATCACGCAACGAGGTGGTACAGTTTGTGCTGCGTATCTCGCTGCTCTCCATCGTCACCTACTACTCGGCGAAATGGCTCATCCGCAACCTGGACCCGTCCAACAAGAGCAAAAAGAAGGCGATCGAGCATGCGGAAGAAATACTGCGAAAGCTAAGCCCAACGATGAAAAAGTCGGCACTACAAAATCTGAACGAGTACGAAATGGTCATTGCTTCGCATCTGGTGGTGCCAGAAAACATTACCGAAAGC                                                                                                                                       ]




>consensus_6831#0
CCGCCCACGCGTCCGCACAAAGAAAGATTGCACGAGACAACAAGGAGAAGAAAAAAATAA
AACAGCAAAAATAATCAGAGTTTCGGCGAGACCCGTTTCAAACACTGATTCAGAGAAAGA
GAAACACAAAGAGACAAAGGACGATACGCATACCAGCGACGGTATCGGATCAGCAAACAG
CACCAAGCAGCACTACGCAACCCAGCAGCAGCAGCAGCAGCATAAGCAACATCAACCAGC
AGCCGAAATGTCCGGAGTGAACCTATCACGCAACGAGGTGGTACAGTTTGTGCTGCGTAT
CTCGCTGCTCTCCATCGTCACCTACTACTCGGCGAAATGGCTCATCCGCAACCTGGACCC
GTCCAACAAGAGCAAAAAGAAGGCGATCGAGCATGCGGAAGAAATACTGCGAAAGCTAAG
CCCAACGATGAAAAAGTCGGCACTACAAAATCTGAACGAGTACGAAATGGTCATTGCTTC
GCATCTGGTGGTGCCAGAAAACATTACCGAAAGCTGGGACAGCATTGCCGGGCTGGATGA
TGTGTGCCAGGAGATCAAGGAAAGTCTCGTGTTTCCCGTCTGCCACCGGGACATGTTTGC
TGGCTCGGCACTGTACCAGCCACCGAAGGGAGTGCTACTATACGGTCCA

consensusID : consensus_6831#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 538
fasta sequence

                              [GAATTCCCCGAGGTTACGAGGTGGTACAGTTTGTGCTGCGTATTCGCTGCTCTCATCGTCACCTACTACTCGGCAAAATGGCTCATCCGCAACCTGGACCCGTCCAACAAGAGCAAAAAGAAGGCGATCGAGCATGCGGAGGAAATACTGCGAAAGCTAAGCCCAACGATGAAAAAGTCGGACTACAAAATCTGAACGAGTACGAAATGGTCATTGNTTCGCCAATTCTTGGGTTGTGTTGCCCAGGAAAAAACAATTTAACCCGGAAAAATGCCTTGGGGGAACAAGCGCATGTTGCCTGGCGGCCTTGGATTGGATTGTTTGTTTNCCCACGGGAAGATTCCACANGGAAACACGTCCTCCGGTTGGTTTTTCCCCCGGTCTTTNGGCCAAACCGGGCGGAACCATTTGTGTTTTGGGCCTTGGACCCTTCGGGCAACCTGGTNTACCCAAGGCCAACACCGGAAAAACGGGCAAGTGCCTTTTTTAAATTACCGGGTTCCCAAACCCAAAGAGCGCTGCCGGGGTAAAAGGAACC]

[+] EMBL AL694863             [GAATTCCCCGAGGTTACGAGGTGGTACAGTTTGTGCTGCGTATTCGCTGCTCTCATCGTCACCTACTACTCGGCAAAATGGCTCATCCGCAACCTGGACCCGTCCAACAAGAGCAAAAAGAAGGCGATCGAGCATGCGGAGGAAATACTGCGAAAGCTAAGCCCAACGATGAAAAAGTCGGACTACAAAATCTGAACGAGTACGAAATGGTCATTGNTTCGCCAATTCTTGGGTTGTGTTGCCCAGGAAAAAACAATTTAACCCGGAAAAATGCCTTGGGGGAACAAGCGCATGTTGCCTGGCGGCCTTGGATTGGATTGTTTGTTTNCCCACGGGAAGATTCCACANGGAAACACGTCCTCCGGTTGGTTTTTCCCCCGGTCTTTNGGCCAAACCGGGCGGAACCATTTGTGTTTTGGGCCTTGGACCCTTCGGGCAACCTGGTNTACCCAAGGCCAACACCGGAAAAACGGGCAAGTGCCTTTTTTAAATTACCGGGTTCCCAAACCCAAAGAGCGCTGCCGGGGTAAAAGGAACC]




>consensus_6831#1
GAATTCCCCGAGGTTACGAGGTGGTACAGTTTGTGCTGCGTATTCGCTGCTCTCATCGTC
ACCTACTACTCGGCAAAATGGCTCATCCGCAACCTGGACCCGTCCAACAAGAGCAAAAAG
AAGGCGATCGAGCATGCGGAGGAAATACTGCGAAAGCTAAGCCCAACGATGAAAAAGTCG
GACTACAAAATCTGAACGAGTACGAAATGGTCATTGNTTCGCCAATTCTTGGGTTGTGTT
GCCCAGGAAAAAACAATTTAACCCGGAAAAATGCCTTGGGGGAACAAGCGCATGTTGCCT
GGCGGCCTTGGATTGGATTGTTTGTTTNCCCACGGGAAGATTCCACANGGAAACACGTCC
TCCGGTTGGTTTTTCCCCCGGTCTTTNGGCCAAACCGGGCGGAACCATTTGTGTTTTGGG
CCTTGGACCCTTCGGGCAACCTGGTNTACCCAAGGCCAACACCGGAAAAACGGGCAAGTG
CCTTTTTTAAATTACCGGGTTCCCAAACCCAAAGAGCGCTGCCGGGGTAAAAGGAACC

consensusID : consensus_6831#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 527
fasta sequence

                              [GCGGCACGAGGGTGCGAAGGGAGAAAAATCGAAGCAGACAGAAACGAAGCAGAAAACGAAACGTGTTTCGTCATAGGATTTCTTCTGCGCCTTTTTAGAGTTTCGGCGATACCCGTTTCAAACACTGATTCAGGGAAAGAGAAAGACAAAGAGACAAAGGACGATACGCATACCAGCGACGGTATCGGTTCAGCAAACAGCACCAAGCAGCACTACGCAACC------CAGCAGCAGCAGCAGCAGCAGCAGCAACATCAACCAGCAGCCGAAATGTCCGGAGTGAACCTATCACGCAACGAGGTGGTACAGTTTGTGCTGCGTATCTCGCTGCTCTCCATCGTCACCTACTACTCGGCAAAATGGCTCATCCGCAACCTGGACCCGTCCAACAAGAGCAAAAAGAAGGCGATCGAGCATGCGGAGGAAATACTGCGANAGCTAAGCCCAACGATGAAAAAGTCNGCACTACAANATCTGAACGAGTACGAAATGGTCATTGC-TTCGCATCTGGTGGTGCCAGAAAACATTAN]

[+] EMBL BX619505             [GCGGCACGAGGGTGCGAAGGGAGAAAAATCGAAGCAGACAGAAACGAAGCAGAAAACGAAACGTGTTTCGTCATAGGATTTCTTCTGCGCCTTTTTAGAGTTTCGGCGATACCCGTTTCAAACACTGATTCAGGGAAAGAGAAAGACAAAGAGACAAAGGACGATACGCATACCAGCGACGGTATCGGTTCAGCAAACAGCACCAAGCAGCACTACGCAACC      CAGCAGCAGCAGCAGCAGCAGCAGCAACATCAACCAGCAGCCGAAATGTCCGGAGTGAACCTATCACGCAACGAGGTGGTACAGTTTGTGCTGCGTATCTCGCTGCTCTCCATCGTCACCTACTACTCGGCAAAATGGCTCATCCGCAACCTGGACCCGTCCAACAAGAGCAAAAAGAAGGCGATCGAGCATGCGGAGGAAATACTGCGANAGCTAAGCCCAACGATGAAAAAGTCNGCACTACAANATCTGAACGAGTACGAAATGGTCATTGC TTCGCATCTGGTGGTGCCAGAAAACATTAN]
[+] EMBL BM594562             [                   ccgGAAAAATCGAAGCAGACAGAAACGAAGCAGAAAACGAAACGTGTTTCGTCATAGGATTTCTTCTGCGCCTTTTTAGAGTTTCGGCGATACCCGTTTCAAACACTGATTCAGGGAAAGAGAAAGACAAAGAGACAAAGGACGATACGCATACCAGCGACGGTATCGGTTCAGCAAACAGCACCAAGCAGCACTACGCAACCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACATCAACCAGCAGCCGAAATGTCCGGAGTGAACCTATCACGCAACGAGGTGGTACAGTTTGTGCTGCGTATCTCGCTGCTCTCCATCGTCACCTACTACTCGGCGAAATGGCTCATCCGCAACCTGGACCCGTCCAACAAGAGCAAAAAGAAGGCGATCGAGCATGCGGAGGAAATACTGCGAAAGCTAAGCCCAACGATGAAAAAGTCGGCACTACAAAATCTGAACGAGTACGAAATGGTCATTGCTTTCGC                         ]




>consensus_6831#2
GCGGCACGAGGGTGCGAAGGGAGAAAAATCGAAGCAGACAGAAACGAAGCAGAAAACGAA
ACGTGTTTCGTCATAGGATTTCTTCTGCGCCTTTTTAGAGTTTCGGCGATACCCGTTTCA
AACACTGATTCAGGGAAAGAGAAAGACAAAGAGACAAAGGACGATACGCATACCAGCGAC
GGTATCGGTTCAGCAAACAGCACCAAGCAGCACTACGCAACCCAGCAGCAGCAGCAGCAG
CAGCAGCAACATCAACCAGCAGCCGAAATGTCCGGAGTGAACCTATCACGCAACGAGGTG
GTACAGTTTGTGCTGCGTATCTCGCTGCTCTCCATCGTCACCTACTACTCGGCAAAATGG
CTCATCCGCAACCTGGACCCGTCCAACAAGAGCAAAAAGAAGGCGATCGAGCATGCGGAG
GAAATACTGCGANAGCTAAGCCCAACGATGAAAAAGTCNGCACTACAANATCTGAACGAG
TACGAAATGGTCATTGCTTCGCATCTGGTGGTGCCAGAAAACATTAN

consensusID : consensus_6831#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 413
fasta sequence

                              [CCGCCCACGCGTCCGGCGTAAGGGAGAAAAATCGAAGCAGACAGAAACGAAGCATGAAAACGAAACGTGTTTCGTCATAGGATTTCTTCTGCGCCTTTTTAGAGTTTCGGCGAGACCCGTTTCAAGCACTGATTCAGGGAAAGAGAAAGACGAAGAGACAAAGGACGATACGCGTACCAGCGACGGTATCGGTTCAGCAAACAGCTCCAAGCAGCACTACGCAACCCAGCAGCAGCAGCATCAGCAGCAACATCAACCGGCAGCCGAGATGTCCGGAGTGAACCTATCGCGCAACGAGGTGGTACAGTTTGTGCTGCGTATCTCGCTGCTCTCCTTCGTCACCTACTACTCGGTGAAATGGCTCATCCGCAACCTGGACCCGTCCAACAAGAGCATAAAGAAGGCGATCGAGC]

[+] EMBL BM584075             [CCGCCCACGCGTCCGGCGTAAGGGAGAAAAATCGAAGCAGACAGAAACGAAGCATGAAAACGAAACGTGTTTCGTCATAGGATTTCTTCTGCGCCTTTTTAGAGTTTCGGCGAGACCCGTTTCAAGCACTGATTCAGGGAAAGAGAAAGACGAAGAGACAAAGGACGATACGCGTACCAGCGACGGTATCGGTTCAGCAAACAGCTCCAAGCAGCACTACGCAACCCAGCAGCAGCAGCATCAGCAGCAACATCAACCGGCAGCCGAGATGTCCGGAGTGAACCTATCGCGCAACGAGGTGGTACAGTTTGTGCTGCGTATCTCGCTGCTCTCCTTCGTCACCTACTACTCGGTGAAATGGCTCATCCGCAACCTGGACCCGTCCAACAAGAGCATAAAGAAGGCGATCGAGC]




>consensus_6831#3
CCGCCCACGCGTCCGGCGTAAGGGAGAAAAATCGAAGCAGACAGAAACGAAGCATGAAAA
CGAAACGTGTTTCGTCATAGGATTTCTTCTGCGCCTTTTTAGAGTTTCGGCGAGACCCGT
TTCAAGCACTGATTCAGGGAAAGAGAAAGACGAAGAGACAAAGGACGATACGCGTACCAG
CGACGGTATCGGTTCAGCAAACAGCTCCAAGCAGCACTACGCAACCCAGCAGCAGCAGCA
TCAGCAGCAACATCAACCGGCAGCCGAGATGTCCGGAGTGAACCTATCGCGCAACGAGGT
GGTACAGTTTGTGCTGCGTATCTCGCTGCTCTCCTTCGTCACCTACTACTCGGTGAAATG
GCTCATCCGCAACCTGGACCCGTCCAACAAGAGCATAAAGAAGGCGATCGAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6831#2      --GCGGCACGAGGGTGCG----AAGGGAGAAAAATCGAAGCAGACAGAAACGAAGCA-GA 53
consensus_6831#3      ---CCGCCCACGCGTCCGGCGTAAGGGAGAAAAATCGAAGCAGACAGAAACGAAGCATGA 57
consensus_6831#0      ---CCGCCCACGCGTCCG----CACAAAGAAAGATTGCACGAGACAACAAGGAGAAGAAA 53
consensus_6831#1      GAATTCCCCGAGGTTACG----AGGTGGTACAGTTTGTGCTGCGTATTCGCTGCTCT-CA 55
                            * *  *  * **           * *  * *        *             *

consensus_6831#2      AAACGAAACGTGTTTCGTCATAGGATTTCTTCTGCGCCTTTTTAGAGTTTCGGCGATACC 113
consensus_6831#3      AAACGAAACGTGTTTCGTCATAGGATTTCTTCTGCGCCTTTTTAGAGTTTCGGCGAGACC 117
consensus_6831#0      AAAATAAAA------CAGCAAAAA--------------TAATCAGAGTTTCGGCGAGACC 93
consensus_6831#1      TCGTCACCTACTACTCGGCAAAAT-----------GGCTCATCCGCAACCTGGACCCGTC 104
                           *         *  ** *                *  *  *      **      *

consensus_6831#2      CGTTTCAAACACTGATTCAGGGAAAGAGAAAGACAAAGAGACA--AAGGACGATACGCAT 171
consensus_6831#3      CGTTTCAAGCACTGATTCAGGGAAAGAGAAAGACGAAGAGACA--AAGGACGATACGCGT 175
consensus_6831#0      CGTTTCAAACACTGATTCAGAGAAAGAGAAACACAAAGAGACA--AAGGACGATACGCAT 151
consensus_6831#1      CAACAAGAGCAAAAAGAAGGCGATCGAGCATGCGGAGGAAATACTGCGAAAGCTAAGCCC 164
                      *      * **   *    * **  *** *     * ** * *    * * * ** **  

consensus_6831#2      ACCAGCGACGGTATCGGTTCAGCAAACAGCACCAAGCA-GCACTACGCAACCCAGCAGCA 230
consensus_6831#3      ACCAGCGACGGTATCGGTTCAGCAAACAGCTCCAAGCA-GCACTACGCAACCCAGCAGCA 234
consensus_6831#0      ACCAGCGACGGTATCGGATCAGCAAACAGCACCAAGCA-GCACTACGCAACCCAGCAGCA 210
consensus_6831#1      AACGATGAAAAAGTCGGACTACAAAATCTGAACGAGTACGAAATGGTCATTGNTTCGCCA 224
                      * *   **     ****   *  ***      * ** * * * *   **      *  **

consensus_6831#2      GCAGCAGCAGCAGCAGCAACATCAACCAGCAGCCGAAATGTCCGGAGTGAACCTATCACG 290
consensus_6831#3      GCAGCATCAGCAGCA---ACATCAACCGGCAGCCGAGATGTCCGGAGTGAACCTATCGCG 291
consensus_6831#0      GCAGCAGCAGCATAAGCAACATCAACCAGCAGCCGAAATGTCCGGAGTGAACCTATCACG 270
consensus_6831#1      ATTCTTGGGTTGTGTTGCCCAGGAAAAAACAATTTAA---CCCGGAAAAATGCCTTGGGG 281
                                         **  **    **    *     *****   *  *  *   *

consensus_6831#2      CAACGAGGTGGTACAGTTTGT--GCTGCGTATCTCGCTGCTCTCCATCGTCACCTACTAC 348
consensus_6831#3      CAACGAGGTGGTACAGTTTGT--GCTGCGTATCTCGCTGCTCTCCTTCGTCACCTACTAC 349
consensus_6831#0      CAACGAGGTGGTACAGTTTGT--GCTGCGTATCTCGCTGCTCTCCATCGTCACCTACTAC 328
consensus_6831#1      GAACAAGCGCATGTTGCCTGGCGGCCTTGGATTGGATTGTTTGTTTNCCCACGGGAAGAT 341
                       *** **    *   *  **   **   * **     ** *      *       *  * 

consensus_6831#2      TCGGCAAAATGGCTCATCCGCAACCTGGACCCGTCCAACAAGAGCAAAAAGAAGGCGATC 408
consensus_6831#3      TCGGTGAAATGGCTCATCCGCAACCTGGACCCGTCCAACAAGAGCATAAAGAAGGCGATC 409
consensus_6831#0      TCGGCGAAATGGCTCATCCGCAACCTGGACCCGTCCAACAAGAGCAAAAAGAAGGCGATC 388
consensus_6831#1      TCCACANGGAAACACGTCCTCCGGTTGG-TTTTTCCCCCGGTCTTTNGGCCAAACCGGGC 400
                      **          * * *** *    ***     ***  *            **  **  *

consensus_6831#2      GAG--CATGCGGAGGAAATACTGCGANAGCTAAGCCCAACGATGAAAAAGTCNGCACTAC 466
consensus_6831#3      GAG--C------------------------------------------------------ 413
consensus_6831#0      GAG--CATGCGGAAGAAATACTGCGAAAGCTAAGCCCAACGATGAAAAAGTCGGCACTAC 446
consensus_6831#1      GGAACCATTTGTGTTTTGGGCCTTGGACCCTTCGGGCAACCTGGTNTACCCAAGGCCAAC 460
                      *    *                                                      

consensus_6831#2      AANATCTGAACGAGTACGAAATGGTCATTGCTTCGCAT-CTGGTGGTGCCAGAAAACATT 525
consensus_6831#3      ------------------------------------------------------------
consensus_6831#0      AAAATCTGAACGAGTACGAAATGGTCATTGCTTCGCAT-CTGGTGGTGCCAGAAAACATT 505
consensus_6831#1      ACCGGAAAAACGGGCAAGTGCCTTTTTTAAATTACCGGGTTCCCAAACCCAAAGAGCGCT 520
                                                                                  

consensus_6831#2      AN---------------------------------------------------------- 527
consensus_6831#3      ------------------------------------------------------------
consensus_6831#0      ACCGAAAGCTGGGACAGCATTGCCGGGCTGGATGATGTGTGCCAGGAGATCAAGGAAAGT 565
consensus_6831#1      GCCGGGGTAAAAGGAACC------------------------------------------ 538
                                                                                  

consensus_6831#2      ------------------------------------------------------------
consensus_6831#3      ------------------------------------------------------------
consensus_6831#0      CTCGTGTTTCCCGTCTGCCACCGGGACATGTTTGCTGGCTCGGCACTGTACCAGCCACCG 625
consensus_6831#1      ------------------------------------------------------------
                                                                                  

consensus_6831#2      ------------------------
consensus_6831#3      ------------------------
consensus_6831#0      AAGGGAGTGCTACTATACGGTCCA 649
consensus_6831#1      ------------------------