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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6833#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 904 fasta sequence
[CCGCGGACGCGTGGGCGGACGCGTGGGGTTTTGTTATGAAAACCCGGCTGATTACGACAAAATAAGAAATTTTATCGGCAGATAGGTGCATTATATTTGGAAATAAAAAAAAACCCACTCACCGGCCGTATTTGCTACAGTTTACGTAATGGCAACGTTCCGCTTGGGCGCTATTGCATCAATTGCAACGAGGATACCGCATCAAAATGTGGCAAAATTGCAGCGAATCAATCTCGTCCGTCGGATGGCTACCGGAGCGGCACCGAAAAAACCAACCAGCACACTGGGACTGGCTGTGAAGGGAATGGCAATCGGTGCCCTGGTCGGCACCGGCTGGTCCGGTTACAGCTACTTCAAGGGCGGTCCCACAGATCATATGCTGCACGAGCATGTAGGGCCGAAGGTTCTCGACAAGCTGCCGGATGTGAAAATAATGCGCAAAGTAGTCAATCCGAATGACGATTCGGGCTTGGATTTGGTGCTGTTCCAGTTCCAAACGTGCCCGTTCTGCTGCAAGGTTCGTGCTTTCCTAGACCACAGCGGGCTTTCCTACTCAGTGGTGGAGGTGGATGCAGTACTTCGTCAGGACATTCGCTGGTCGGACAGTAAAAAAGTTCCAATTTTGCTAGCGAAAACGAAATCGGGCAAATACGTTCAGCTAACGGACTCGAGCATGATAGTGTCCTCGATTTCCAGCTTCCTTCGGGACAAGAAGCAAGACATCGGCGAGCTAGCCAAATACTATCCGTCGATATCGTACGAAAACGATGCGGGACGAAAAGTGTTCGACATTATGAACAAATATTTCCTGATGTATCANGAAAAGAAGGTCGACAATCGTACAAAGGAAGAGCAAGAGGAGGAGCGCAAGTGGCGTGCCTGGGCCGACGATCATTTTGGTGCA]
[+] EMBL BM604489 [CCGCGGACGCGTGGGCGGACGCGTGGGGTTTTGTTATGAAAACCCGGCTGATTACGACAAAATAAGAAATTTTATCGGCAGATAGGTGCATTATATTTGGAAATAAAAAAAAACCCACTCACCGGCCGTATTTGCTACAGTTTACGTAATGGCAACGTTCCGCTTGGGCGCTATTGCATCAATTGCAACGAGGATACCGCATCAAAATGTGGCAAAATTGCAGCGAATCAATCTCGTCCGTCGGATGGCTACCGGAGCGGCACCGAAAAAACCAACCAGCACACTGGGACTGGCTGTGAAGGGAATGGCAATCGGTGCCCTGGTCGGCACCGGCTGGTCCGGTTACAGCTACTTCAAGGGCGGTCCCACAGATCATATGCTGCACGAGCATGTAGGGCCGAAGGTTCTCGACAAGCTGCCGGATGTGAAAATAATGCGCAAAGTAGTCAATCCGAATGACGATTCGGGCTTGGATTTGGTGCTGTTCCAGTTCCAAACGTGCCCGTTCTGCTGCAAGGTTCGTGCTTTCCTAGACCACAGCGGGCTTTCCTACTCAGTGGTGGAGGTGGATGCAGTACTTCGTCAGGACATTCGCTGGTCGGACAGTAAAAAAGTTCCAATTTTGCTAGCGAAAACGAAATCGGGCAAATACGTTCAGCTAACGGACTCGAGCATGATAGTGTCCT ]
[+] EMBL BX623978 [ CCGGAGCGGGACCGAAAAAACCAACCAGCACACTAGGACTGGCTGTGAAGGGAATGGCAATCGGTGCCCTGGTCGGCACCGGCTGGTCCGGTTACAGCTACTTCAAGGGCGGTCCCACAGATCATATGCTGCACGAGCATGTAGGGCCGAAGGTTCTCGACAAGCTGCCGGATGTGAAAATAATGCGCAAAGTAGTCAATCCGAATGATGATTCGGGCTTGGATTTGGTGCTGTTCCAGTTCCAAACGTGCCCGTTCTGCTGCAAGGTTCGTGCTTTCCTAGACCACAGCGGGCTTTCCTACTCAGTGGTGGAGGTGGATGCAGTACTTCGTCAGGACATTCGCTGGTCGGACAGTAAAAAAGTTCCAATTTTGCTAGCGAAAACGAAATCGGGCAAATACGTTCAGCTAACGGACTCGAGCATGATAGTGTCCTCGATTTCCAGCTTCCTTCGGGACAAGAAGCAAGACATCGGCGAGCTAGCCAAATACTATCCGTCGATATCGTACGAAAACGATGCGGGACGAAAAGTGTTCGACATTATGAACAAATATTTCCTGATGTATCANGAAAAGAAGGTCGACAATCGTACAAAGGAAGAGCAAGAGGAGGAGCGCAAGTGGCGTGCCTGGGCCGACGATCATTTTGGTGCA]
consensusID : consensus_6833#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 704 fasta sequence
[AATTCCCCGCNGGTTTAAATAAAAAAACCACTCACCGGCCGTATTTGCTACAGTTTACGTAATGGCAACGTTCCGCTTGGGCGCTATTGCATCAATTGCAACGAGGATACCGCATCAAAATGTGGCTAAATTGCAGCGAATCAATCTCGTCCGTCGGATGGCTACCGGAGCGGGACCGAAAAAACCAACCAGCACACTAGGACTGGCTGTGAAGGGAATGGCAATCGGTGCCCTGGTCGGCACGGCTGGTCCGGTTACAGCTACTTCAAGGGCGGTCCCACAGATCATATGCTGCACGAGCATGTAGGGCCGAAGGTTCTCGACAAGCTGCCGGATGTGAAAATAATGCGCAAAGTAGTCAATCCGAATGATGCATTCGGGCTTGGATTTGGTGCTGTTCCAGTTCCAAACGTGCCCGTTCTGCTGCAAGGTTCGTAGCTATTCCTAGACCACAGCGGGCTTTCCTACTCAGATGGTAGGACNGTGGCATGCAGTACTTTCAGNTCAGGACATTCGACTGNGTCGGCACAGNAAAACAAGTTCCAATTATAGCATAGCCGAAAACCGANAATCGGGCNACATACCGTACAAGCTAAACGGACTCGAAGACAATGAATAGATGTNACTCGAATCTTCCAGCCTATCCTATCGGCNGCACAAGAAGCNAAGAACATCAGGCGANCACTAGGCCAAATACTATCCGN]
[+] EMBL AL694900 [AATTCCCCGCNGGTTTAAATAAAAAAACCACTCACCGGCCGTATTTGCTACAGTTTACGTAATGGCAACGTTCCGCTTGGGCGCTATTGCATCAATTGCAACGAGGATACCGCATCAAAATGTGGCTAAATTGCAGCGAATCAATCTCGTCCGTCGGATGGCTACCGGAGCGGGACCGAAAAAACCAACCAGCACACTAGGACTGGCTGTGAAGGGAATGGCAATCGGTGCCCTGGTCGGCACGGCTGGTCCGGTTACAGCTACTTCAAGGGCGGTCCCACAGATCATATGCTGCACGAGCATGTAGGGCCGAAGGTTCTCGACAAGCTGCCGGATGTGAAAATAATGCGCAAAGTAGTCAATCCGAATGATGCATTCGGGCTTGGATTTGGTGCTGTTCCAGTTCCAAACGTGCCCGTTCTGCTGCAAGGTTCGTAGCTATTCCTAGACCACAGCGGGCTTTCCTACTCAGATGGTAGGACNGTGGCATGCAGTACTTTCAGNTCAGGACATTCGACTGNGTCGGCACAGNAAAACAAGTTCCAATTATAGCATAGCCGAAAACCGANAATCGGGCNACATACCGTACAAGCTAAACGGACTCGAAGACAATGAATAGATGTNACTCGAATCTTCCAGCCTATCCTATCGGCNGCACAAGAAGCNAAGAACATCAGGCGANCACTAGGCCAAATACTATCCGN]
consensusID : consensus_6833#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 695 fasta sequence
[CCGCCCACGCGTCCGACAAAATAAGAAATTTTATCGGCAGATAGGTGCATTATATTTGGAAATAAAAAAAAACCCACTCACCGGCCGTATTTGCTACAGTTTACGTAATGGCAACGTTCCGCTTGGGCGCTATTGCATCAATTGCAACGAGGATACCGCATCAAAATGTGGCAAAATTGCAGCGAATCAATCTCGTCCGTCGGATGGCTACCGGAGCGGCACCGAAAAAACCAACCAGCACACTGGGACTGGCTGTGAAGGGAATGGCAATCGGTGCCCTGGTCGGCACCGGCTGGTCCGGTTACAGCTACTTCAAGGGCGGTCCCACAGATCATATGCTGCACGAGCATGTAGGGCCGAAGGTTCTCGACAAGCTGCCGGATGTGAAAATAATGCGCAAAGTAGTCAATCCGAATGACGATTCGGGCTTGGATTTGGTGCTGTTCCAGTTCCAAACGTGCCCGTTCTGCTGCAAGGTTCGTGCTTTCCTAGACCACAGCGGGCTTTCCTACTCAGTGGTGGAGGTGGATGCAGTACTTCGTCAGGACATTCGCTGGTCGGACAGTAAAAAAGTTCCAATTTTGCTAGCGAAAACGAAATCGGGCAAATACGTTCAGCTAACGGACTCGAGCATGATAGTGTCCTCGATTTCCAGCTTCCTTCGGGACAAGAAGCAAGACATCGGCGAGCTAGCC]
[+] EMBL BM575909 [CCGCCCACGCGTCCGACAAAATAAGAAATTTTATCGGCAGATAGGTGCATTATATTTGGAAATAAAAAAAAACCCACTCACCGGCCGTATTTGCTACAGTTTACGTAATGGCAACGTTCCGCTTGGGCGCTATTGCATCAATTGCAACGAGGATACCGCATCAAAATGTGGCAAAATTGCAGCGAATCAATCTCGTCCGTCGGATGGCTACCGGAGCGGCACCGAAAAAACCAACCAGCACACTGGGACTGGCTGTGAAGGGAATGGCAATCGGTGCCCTGGTCGGCACCGGCTGGTCCGGTTACAGCTACTTCAAGGGCGGTCCCACAGATCATATGCTGCACGAGCATGTAGGGCCGAAGGTTCTCGACAAGCTGCCGGATGTGAAAATAATGCGCAAAGTAGTCAATCCGAATGACGATTCGGGCTTGGATTTGGTGCTGTTCCAGTTCCAAACGTGCCCGTTCTGCTGCAAGGTTCGTGCTTTCCTAGACCACAGCGGGCTTTCCTACTCAGTGGTGGAGGTGGATGCAGTACTTCGTCAGGACATTCGCTGGTCGGACAGTAAAAAAGTTCCAATTTTGCTAGCGAAAACGAAATCGGGCAAATACGTTCAGCTAACGGACTCGAGCATGATAGTGTCCTCGATTTCCAGCTTCCTTCGGGACAAGAAGCAAGACATCGGCGAGCTAGCC]
[+] EMBL BM620018 [ CCG CAAAATAAGAAATTTTATCGGCAGATAGGTGCATTATATTTGGAAATAAAAAAAAACCCACTCACCGGCCGTATTTGCTACAGTTTACGTAATGGCAACGTTCCGCTTGGGCGCTATTGCATCAATTGCAACGAGGATACCGCATCAAAATGTGGCAAAATTGCAGCGAATCAATCTCGTCCGTCGGATGGCTACCGGAGCGGCACCGAAAAAACCAACCAGCACACTGGGACTGGCTGTGAAGGGAATGGCAATCGGTGCCCTGGTCGGCACCGGCTGGTCCGGTTACAGCTACTTCAAGGGCGGTCCCACAGATCATATTCTGCACGAGCATGTAGGGCCGAAGGTTCTCGACAAGCTGCCGGA ]
consensusID : consensus_6833#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 513 fasta sequence
[GCAGAATTCCCCGAGGTAAAATAAAAAAAAACCACTCACCGGCCGTATTTGCTACAGTTTACGTAATGGCAACGTTCCGCTTGTGGCGCTATTGCATCAATTGCAACGAGGATACCGCATCAAAATGTGGCAAAATTGCAGCGAATCAATCTCGTCCGTCGGATGGCTACCGGAGCGGCACCGAAAAAACCAACAGCACACTGGGACTGGCTGTGAAGGGAATGGCAATCGGTGCCCTGGTCGGCACCGGCTGGTCCGGTTACAGCTACTTCAAGGGCGGTCCCACAGATCATATGCTGCACGAGCACTTGTAGNGGCCGAAGGTATCTCGACAAGCTGCCGGATGTGNACCAATAATGCGCAAGTAGTCAATCCGAAATTGACGATTCGGNGCCTCTGGCCTTCGGTGCTGTANCCAGTTCCAAACGTGCCCGTTCTTGCTGCAAGGTTCGTGCTTTCCTAGACCACAGCGGGCTTTCCTACTACAGTTGGTGGAAGGTGGATGCCAGTACT]
[+] EMBL AL695701 [GCAGAATTCCCCGAGGTAAAATAAAAAAAAACCACTCACCGGCCGTATTTGCTACAGTTTACGTAATGGCAACGTTCCGCTTGTGGCGCTATTGCATCAATTGCAACGAGGATACCGCATCAAAATGTGGCAAAATTGCAGCGAATCAATCTCGTCCGTCGGATGGCTACCGGAGCGGCACCGAAAAAACCAACAGCACACTGGGACTGGCTGTGAAGGGAATGGCAATCGGTGCCCTGGTCGGCACCGGCTGGTCCGGTTACAGCTACTTCAAGGGCGGTCCCACAGATCATATGCTGCACGAGCACTTGTAGNGGCCGAAGGTATCTCGACAAGCTGCCGGATGTGNACCAATAATGCGCAAGTAGTCAATCCGAAATTGACGATTCGGNGCCTCTGGCCTTCGGTGCTGTANCCAGTTCCAAACGTGCCCGTTCTTGCTGCAAGGTTCGTGCTTTCCTAGACCACAGCGGGCTTTCCTACTACAGTTGGTGGAAGGTGGATGCCAGTACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6833#0 CCGCGGACGCGTGGGCGGACGCGTGGGGTTTTGTTATGAAAACCCGGCTGATTACGACAA 60
consensus_6833#2 -----------------------------------------CCGCCCACGCGTCCGACAA 19
consensus_6833#3 ------------------------------------------------------------
consensus_6833#1 ------------------------------------------------------------
consensus_6833#0 AATAAGAAATTTTATCGGCAGATAGGTGCATTATATTTGGAAATAAAAAAAAACCCACTC 120
consensus_6833#2 AATAAGAAATTTTATCGGCAGATAGGTGCATTATATTTGGAAATAAAAAAAAACCCACTC 79
consensus_6833#3 -----------------GCAGAATTCCCCGAGGTA-----AAATAAAAAAAAACC-ACTC 37
consensus_6833#1 ------------------------AATTCCCCGCNGGTTTAAATAAAAAAA---CCACTC 33
* *********** * ****
consensus_6833#0 ACCGGCCGTATTTGCTACAGTTTACGTAATGGCAACGTTCCGCTTG-GGCGCTATTGCAT 179
consensus_6833#2 ACCGGCCGTATTTGCTACAGTTTACGTAATGGCAACGTTCCGCTTG-GGCGCTATTGCAT 138
consensus_6833#3 ACCGGCCGTATTTGCTACAGTTTACGTAATGGCAACGTTCCGCTTGTGGCGCTATTGCAT 97
consensus_6833#1 ACCGGCCGTATTTGCTACAGTTTACGTAATGGCAACGTTCCGCTTG-GGCGCTATTGCAT 92
********************************************** *************
consensus_6833#0 CAATTGCAACGAGGATACCGCATCAAAATGTGGCAAAATTGCAGCGAATCAATCTCGTCC 239
consensus_6833#2 CAATTGCAACGAGGATACCGCATCAAAATGTGGCAAAATTGCAGCGAATCAATCTCGTCC 198
consensus_6833#3 CAATTGCAACGAGGATACCGCATCAAAATGTGGCAAAATTGCAGCGAATCAATCTCGTCC 157
consensus_6833#1 CAATTGCAACGAGGATACCGCATCAAAATGTGGCTAAATTGCAGCGAATCAATCTCGTCC 152
********************************** *************************
consensus_6833#0 GTCGGATGGCTACCGGAGCGGCACCGAAAAAACCAACCAGCACACTGGGACTGGCTGTGA 299
consensus_6833#2 GTCGGATGGCTACCGGAGCGGCACCGAAAAAACCAACCAGCACACTGGGACTGGCTGTGA 258
consensus_6833#3 GTCGGATGGCTACCGGAGCGGCACCGAAAAAACCAAC-AGCACACTGGGACTGGCTGTGA 216
consensus_6833#1 GTCGGATGGCTACCGGAGCGGGACCGAAAAAACCAACCAGCACACTAGGACTGGCTGTGA 212
********************* *************** ******** *************
consensus_6833#0 AGGGAATGGCAATCGGTGCCCTGGTCGGCACCGGCTGGTCCGGTTACAGCTACTTCAAGG 359
consensus_6833#2 AGGGAATGGCAATCGGTGCCCTGGTCGGCACCGGCTGGTCCGGTTACAGCTACTTCAAGG 318
consensus_6833#3 AGGGAATGGCAATCGGTGCCCTGGTCGGCACCGGCTGGTCCGGTTACAGCTACTTCAAGG 276
consensus_6833#1 AGGGAATGGCAATCGGTGCCCTGGTCGGCAC-GGCTGGTCCGGTTACAGCTACTTCAAGG 271
******************************* ****************************
consensus_6833#0 GCGGTCCCACAGATCATATGCTGCACGAGCA--TGTAGGG-CCGAAGGT-TCTCGACAAG 415
consensus_6833#2 GCGGTCCCACAGATCATATGCTGCACGAGCA--TGTAGGG-CCGAAGGT-TCTCGACAAG 374
consensus_6833#3 GCGGTCCCACAGATCATATGCTGCACGAGCACTTGTAGNGGCCGAAGGTATCTCGACAAG 336
consensus_6833#1 GCGGTCCCACAGATCATATGCTGCACGAGCA--TGTAGGG-CCGAAGGT-TCTCGACAAG 327
******************************* ***** * ******** **********
consensus_6833#0 CTGCCGGATGTGAA--AATAATGCGCAAAGTAGTCAATCCGAA--TGACG-ATTCGGG-- 468
consensus_6833#2 CTGCCGGATGTGAA--AATAATGCGCAAAGTAGTCAATCCGAA--TGACG-ATTCGGG-- 427
consensus_6833#3 CTGCCGGATGTGNACCAATAATGCGCAA-GTAGTCAATCCGAAATTGACG-ATTCGGNGC 394
consensus_6833#1 CTGCCGGATGTGAA--AATAATGCGCAAAGTAGTCAATCCGAA--TGATGCATTCGGG-- 381
************ * ************ ************** *** * ******
consensus_6833#0 --CTTGGATTTGGTGCTGT-TCCAGTTCCAAACGTGCCCGTTCT-GCTGCAAGGTTCGT- 523
consensus_6833#2 --CTTGGATTTGGTGCTGT-TCCAGTTCCAAACGTGCCCGTTCT-GCTGCAAGGTTCGT- 482
consensus_6833#3 CTCTGGCCTTCGGTGCTGTANCCAGTTCCAAACGTGCCCGTTCTTGCTGCAAGGTTCGT- 453
consensus_6833#1 --CTTGGATTTGGTGCTGT-TCCAGTTCCAAACGTGCCCGTTCT-GCTGCAAGGTTCGTA 437
** * ** ******** *********************** **************
consensus_6833#0 GCT-TTCCTAGACCACAGCGGGCTTTCCTACT-CAGT-GGTGGA-GGTGG-ATGC-AGTA 577
consensus_6833#2 GCT-TTCCTAGACCACAGCGGGCTTTCCTACT-CAGT-GGTGGA-GGTGG-ATGC-AGTA 536
consensus_6833#3 GCT-TTCCTAGACCACAGCGGGCTTTCCTACTACAGTTGGTGGAAGGTGG-ATGCCAGTA 511
consensus_6833#1 GCTATTCCTAGACCACAGCGGGCTTTCCTACTCAGATGGTAGGACNGTGGCATGC-AGTA 496
*** **************************** * * *** **** **** ****
consensus_6833#0 CTTC---GTCAGGACATTCGCT--GGTCGG-ACAGTAAAA-AAGTTCCAATTTTGCTAG- 629
consensus_6833#2 CTTC---GTCAGGACATTCGCT--GGTCGG-ACAGTAAAA-AAGTTCCAATTTTGCTAG- 588
consensus_6833#3 CT---------------------------------------------------------- 513
consensus_6833#1 CTTTCAGNTCAGGACATTCGACTGNGTCGGCACAGNAAAACAAGTTCCAATTATAGCATA 556
**
consensus_6833#0 --CGAAAAC--GAAATCGGGCAA-ATACGTTC--AGCTAA-CGGACTCGAGCATGATAG- 680
consensus_6833#2 --CGAAAAC--GAAATCGGGCAA-ATACGTTC--AGCTAA-CGGACTCGAGCATGATAG- 639
consensus_6833#3 ------------------------------------------------------------
consensus_6833#1 GCCGAAAACCGANAATCGGGCNACATACCGTACAAGCTAAACGGACTCGAAGACAATGAA 616
consensus_6833#0 ----TGTC-CTCGA--TTTCCAGCTT------CCTTCGGGACAAGAAGCAAG--ACATC- 724
consensus_6833#2 ----TGTC-CTCGA--TTTCCAGCTT------CCTTCGGGACAAGAAGCAAG--ACATC- 683
consensus_6833#3 ------------------------------------------------------------
consensus_6833#1 TAGATGTNACTCGAATCTTCCAGCCTATCCTATCGGCNGCACAAGAAGCNAAGAACATCA 676
consensus_6833#0 GGCGAGCT---AGCCAAATACTATCCGTCGATATCGTACGAAAACGATGCGGGACGAAAA 781
consensus_6833#2 GGCGAGCT---AGCC--------------------------------------------- 695
consensus_6833#3 ------------------------------------------------------------
consensus_6833#1 GGCGANCACTAGGCCAAATACTATCCGN-------------------------------- 704
consensus_6833#0 GTGTTCGACATTATGAACAAATATTTCCTGATGTATCANGAAAAGAAGGTCGACAATCGT 841
consensus_6833#2 ------------------------------------------------------------
consensus_6833#3 ------------------------------------------------------------
consensus_6833#1 ------------------------------------------------------------
consensus_6833#0 ACAAAGGAAGAGCAAGAGGAGGAGCGCAAGTGGCGTGCCTGGGCCGACGATCATTTTGGT 901
consensus_6833#2 ------------------------------------------------------------
consensus_6833#3 ------------------------------------------------------------
consensus_6833#1 ------------------------------------------------------------
consensus_6833#0 GCA 904
consensus_6833#2 ---
consensus_6833#3 ---
consensus_6833#1 ---
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||