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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6853#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1308 fasta sequence
[CTCTCTCTATCAAACCCACCTGGCGATCCGGTNGTCTTTTGTATATTANAGTGTAAAGTTTTCGTGCGGGAAAACTGTGCGCGACAAATGTTGAAGTTTTGGTTTGGTGGTCCAAATGTTTNANCCGCCGTAATGGTGAAAAACACGTGTGTTTGCAGTATCATAAAAGTAGAAACTAGCATANCTCCATCTTAAACCAACAAACAAACGTATTGTTTAAAAGAAAACCNGCCTCCGTCGTGCCCTCGTCCCGTGGCTCGTCCAAGNCCCCCNTTCGTCACATTGTTTCTTCTTACTCAATCTTTGCAAAGTTCATGTATCACACATTTCTGAATCAANGTAAGCTTACGCGCTCGACTAATATAGT-TATGTAGATTTGTATATAGGGTAGAGCTTATGCAGTAAA-TT-GTGTACGATAGATATTCATTCGATTAGCAAATAACGCCCGCCCAAATAACGTCTTCCTCTAGCAACAAGTAGATATTACCATTTGGGGAGAGAGATGGCGCTGGTGAACAAACCAAAACCTCCAAAACAAAACCCTTATGAGTATCCAGGCGCCTATACTACTTCCGCGCATCCTGTGTCCACTACACGGGACGGGATCCCTAGAACTTCGCTGTCTGTGTACGCTACTGTAATCTTAGCTTTATCGCTAATTATGT-ATGCATGCATGTTACACACTTTAAATGTGAAAAACAAAATGGCAACGTAATACTACACTTTATCTCGCGACGTCTCCTCTTTTGCCCTAGCTAACGGTCTTTTTTTGTTTTTGCGGTAAGCTAAAACCGGCTGATTCTACACATTCTACACCCCGCTTTTGCTGCTGGTGGCGGCTATAGCACATTAGTGGCAACAACAAGGAAAACAAAAATCAATCACACAAACCAAGAGTGTGCCCAGATAGTCGGATTCAATAGGCGGAATTAATAATGCTCTGTCCTGTGCGAACGACAGCGCAATTTTGGTCCATCATATCGCAACCGTAAAACGTTCGACACACGTGTCTCGTTGGGTGTGCTTTGCGCAAAAAGACAACACAAAACCGCACAGTTTGAGATGCAATATAAGTAATGGAAACACGCGCTCGAACGAAAGTTCGAATGAAACAAAACGATTGTAGCGAAAAGTTTAATTTGTTAAATCACGCTCTCAAATCATCAAACCCTTTAAATTTGGGAAGGAAATAATAAAGATAAAGAACGTTATCCTAAATAGCATTCGGGTGGTGTACTGTGTAAACAAACTATTACTGTTATGCTGGGAGCACGCGAGCTAATGCTTCGTAATAGACGCACGCCCTCT]
[-] EMBL BX623313 [CTCTCTCTATCAAACCCACCTGGCGATCCGGTNGTCTTTTGTATATTANAGTGTAAAGTTTTCGTGCGGGAAAACTGTGCGCGACAAATGTTGAAGTTTTGGTTTGGTGGTCCAAATGTTTNANCCGCCGTAATGGTGAAAAACACGTGTGTTTGCAGTATCATAAAAGTAGAAACTAGCATANCTCCATCTTAAACCAACAAACAAACGTATTGTTTAAAAGAAAACCNGCCTCCGTCGTGCCCTCGTCCCGTGGCTCGTCCAAGNCCCCCNTTCGTCACATTGTTTCTTCTTACTCAATCTTTGCAAAGTTCATGTATCACACATTTCTGAATCAANGTAAGCTTACGCGCTCGACTAATATAGTGTATGTAGATTTGTATATAGTGTAGAGCTTATGCAGTAAA TTNGTGTGCGATAGATATTCATTNGNTTAGCAAATAACGCCCGCCCAAATAACGTCTTCCTCTAGCAACAAGTAGATATTACCATTTGGGGAGAGAGATGGC ]
[-] EMBL BX627113 [ GTTCATGTATCACACATTTCTGAATCAATGTAAGCTTNCGCGCTCGACTAATATAGT TATGTAGATTTGTATATAGGGTAGAGCTTATGCAGTAAATTT GTGTACGATAGATATTCATTCGATTAGCAAATAACGCCCGCCCAAATAACGTCTTCCTCTAGCAACAAGTAGATATTACCATTTGGGGAGAGAGATGGCGCTGGTGAACAAACCAAAACCTCCAAAACAAAACCCTTATGAGTATCCAGGCGCCTATACTACTTCCGCGCATCCTGTGTCCACTACACGGGACGGGATCCCTAGAACTTCGCTGTCTGTGTACGCTACTGTAATCTTAGCTTTATCGCTAATTATGT ATGCATGCATGTTACACACTTTAAATGTGAAAAACAAAATGGCAACGTAATACTACACTTTATCTCGCGACGTCTCCTCTTTTGCCCTAGCTAACGGTCTTTTTTTGTTTTTGCGGTAAGCTAAAACCGGCTGATTCTACACATTCTACACCCCGCTTTTGCTGCTGGTGGCGGCTATAGCACATTAGTGGCAACAACAAGGAAAACAAAAATCAATCACACAAACCAAGAGTGTGCCCAGATAGTCGGATTCAATAGGCGGAATTAATAATGCTCTGTCCTGTGCGAACGACAGCGCAATTTTGGTCCATCATATCGCAACCGTAAAACGTTCG ]
[-] EMBL BX620106 [ GT TATGTAGATTTGTATATAGNGTAGAGCTTATGCAGTAAA TT GTGTACGATAGATATTCATTCGATTAGCAAATAACGCCCGCCCAAATAACGTCTTCNTCTAGCAACAAGTAGATATTACCATTTGGGGAGAGAGATGGCGCTGGTGAACAAACCAAACCCTCCAAAACAAAACCCTTATGAGTATCCAGGCGCCTATACTACTTCCGCGCATCCTGTGTCCACTACACGGGACGGGATCCCTAGAACTTCGCTGTCTGTGTACGCTACTGTAATCTTAGCTTTATCGCTAATTATGTGATGCATGCATGTTACACACTTTAAATGTGAAAAACAAAATGGCAACGTAATACTACACTTTATCTCGCGACGTCTCCTCTTTTGCCCTAGCTAACGGTCTTTTTTTGTTTTTGCGGTAAGCTAAAACCGGCTGATTCTACACATTCTACACCCCGCTTTTGCTGCTGGTGGCGGCTATAGCACATTAGTGGCAACAACAAGGAAAACAAAAATCAATCACACAAACCAAGAGTGTGCCCAGATAGTCGGATTCAATAGGCGGAATTAATAATGCTCTGTCCTGTGCGAACGACAGCGCAATTTTGGTCCATCATATCGCAACCGTAAAACGTTCGACACACGTGTCTCGTTGGGTGTGCTTTGCGCAAAAAGACAACACAAAACCGCACAGTTTGAGATGCAATATAAGTAATGGAAACACGCGC ]
[+] EMBL AGA285406 [ AGCGCAATTTTGGTCCATCATGTCGCAACCGTAAAACGTTCGACACACGTGTCTCGTTGGGTGTGCTTTGCGCAAAAAGACAACACAAAACCGCACAGTTTGAGATGCAATATAAGTAATGGAAACACGCGCTCGAACGAAAGTTCGAATGAAACAAAACGATTGTAGCGAAAAGTTTAATTTGTTAAATCACGCTCTCAAATCATCAAACCCTTTAAATTTGGGAAGGAAATAATAAAGATAAAGAACGTTATCCTAAATAGCATTCGGGTGGTGTACTGTGTAAACAAACTATTACTGTTATGCTGGGAGCACGCGAGCTAATGCTTCGTAATAGACGCACGCCCTCT]
consensusID : consensus_6853#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 818 fasta sequence
[GTTGGGGCTGAAGAAAGTGTTCTCCTTTTTTAAAGGCGCCCTGTGGTGTTGTGAAATTTTCCCCGCCCCNTGTTTGAAAAGTGTATAAAATGGGGTTAAAATTGGGGCACAAATAGGGGCCCACAATTTGGTGTTTGTTTAAACCCGAGAACCCAACCCCTGTGTGTGTTAAGAAAAATTTTGGCGTNGGGGTAATATATAGNGTACCCCGNATAAATTGGGGGCCCNTANAACCGCGGTTGAAAAGTTGAACACGTTTAACCCACCCGTGTGGTTAAAATTTCCTTGTCCGGCCGGGAAACCGGTTTCCCTTGCCCCTTCCCTTGTTTTGTGTGGGCCCACCCTCTTTAGGCCNTTTAACCCGGGGTTTCCCTTTTGTTATTTNTTTTGCGATTTTTTTTTTTCGCCCAGGGGNTTAAAAAGGCTTAAAAAAACCGGGCTGGATTTGCGTACAACCAGTNTTCGTGACAACCCCGCCTTTTTTGCTGCTTGTTGCCGGCTTATTAGCAACATTAAGTGGCAAACAACAAGGAAAACAAAATCGAATCAACACAAAACCAAGAGTGTGCCCCAGATAGTCGGATTCAATAGCCGGAAATTAATAATGCTCTGTCCTGTGCGAACGACAGCGCAATTTTGGTCCATCATATCGCAACCGTAAAACAGTTCAGACACACGTGTCATCGTTGGGTGTGCTTTGCGCAAAAAGACATACACAAAACCGCACAGTTTGAGATGCAATATAAGTAATGGAAACACGCGCTCGAAAGAAAGTTCGAATGAAACAAAACGATGTAGCGAAANNNCGGGGGCGATCT]
[-] EMBL AL693617 [GTTGGGGCTGAAGAAAGTGTTCTCCTTTTTTAAAGGCGCCCTGTGGTGTTGTGAAATTTTCCCCGCCCCNTGTTTGAAAAGTGTATAAAATGGGGTTAAAATTGGGGCACAAATAGGGGCCCACAATTTGGTGTTTGTTTAAACCCGAGAACCCAACCCCTGTGTGTGTTAAGAAAAATTTTGGCGTNGGGGTAATATATAGNGTACCCCGNATAAATTGGGGGCCCNTANAACCGCGGTTGAAAAGTTGAACACGTTTAACCCACCCGTGTGGTTAAAATTTCCTTGTCCGGCCGGGAAACCGGTTTCCCTTGCCCCTTCCCTTGTTTTGTGTGGGCCCACCCTCTTTAGGCCNTTTAACCCGGGGTTTCCCTTTTGTTATTTNTTTTGCGATTTTTTTTTTTCGCCCAGGGGNTTAAAAAGGCTTAAAAAAACCGGGCTGGATTTGCGTACAACCAGTNTTCGTGACAACCCCGCCTTTTTTGCTGCTTGTTGCCGGCTTATTAGCAACATTAAGTGGCAAACAACAAGGAAAACAAAATCGAATCAACACAAAACCAAGAGTGTGCCCCAGATAGTCGGATTCAATAGCCGGAAATTAATAATGCTCTGTCCTGTGCGAACGACAGCGCAATTTTGGTCCATCATATCGCAACCGTAAAACAGTTCAGACACACGTGTCATCGTTGGGTGTGCTTTGCGCAAAAAGACATACACAAAACCGCACAGTTTGAGATGCAATATAAGTAATGGAAACACGCGCTCGAAAGAAAGTTCGAATGAAACAAAACGATGTAGCGAAANNNCGGGGGCGATCT]
consensusID : consensus_6853#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 483 fasta sequence
[CAATCTTTGCAAAGTTCATGTATCACACATTTCTGAATCAATGTAAGCTTACGCGCTCGACTAATATAGTTATGTAGATTTGTATATAGTGTAGAGCTTATGCAGTAAATTTGTGTACGATAGATATTCATTCGATTAGCAAATAACGCCCGCCCAAATAACGTCTTCCTCTAGCAACAAGTAGATATTACCATTTGGGGAGAGAGATGGCGCTGGTGAACAAACCAAAACCTCCAAAACAAAACCCTTATGAGTATCCAGGCGCCTATACTACTTCCGCGCATCCTGTGTCCACTACACGGGACGGGATCCCTAGAACTTCGCTGTCTGTGTACGCTACTGTAATCTTAGCTTTATCGCTAATTATGTATGCATGCATGTTACACACTTTAAATGTGAAAAACAAAATGGCAACGTAATACTACACTTTATCTCGCGACGTCTCCTCTTTTGCCCTAGCTAACGTCTTTTTACCTCGGGGAT]
[-] EMBL AL933091 [CAATCTTTGCAAAGTTCATGTATCACACATTTCTGAATCAATGTAAGCTTACGCGCTCGACTAATATAGTTATGTAGATTTGTATATAGTGTAGAGCTTATGCAGTAAATTTGTGTACGATAGATATTCATTCGATTAGCAAATAACGCCCGCCCAAATAACGTCTTCCTCTAGCAACAAGTAGATATTACCATTTGGGGAGAGAGATGGCGCTGGTGAACAAACCAAAACCTCCAAAACAAAACCCTTATGAGTATCCAGGCGCCTATACTACTTCCGCGCATCCTGTGTCCACTACACGGGACGGGATCCCTAGAACTTCGCTGTCTGTGTACGCTACTGTAATCTTAGCTTTATCGCTAATTATGTATGCATGCATGTTACACACTTTAAATGTGAAAAACAAAATGGCAACGTAATACTACACTTTATCTCGCGACGTCTCCTCTTTTGCCCTAGCTAACGTCTTTTTACCTCGGGGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6853#0 CTCTCTCTATCAAACCCACCTGGCGATCCGGTNGTCTTTTGTATATTANAGTGTAAAGTT 60
consensus_6853#2 ------------------------------------------------------------
consensus_6853#1 ------------------------------------------------------------
consensus_6853#0 TTCGTGCGGGAAAACTGTGCGCGACAAATGTTGAAGTTTTGGTTTGGTGGTCCAAATGTT 120
consensus_6853#2 ------------------------------------------------------------
consensus_6853#1 ------------------------------------------------------------
consensus_6853#0 TNANCCGCCGTAATGGTGAAAAACACGTGTGTTTGCAGTATCATAAAAGTAGAAACTAGC 180
consensus_6853#2 ------------------------------------------------------------
consensus_6853#1 ------------------------------------------------------------
consensus_6853#0 ATANCTCCATCTTAAACCAACAAACAAACGTATTGTTTAAAAGAAAACCNGCCTCCGTCG 240
consensus_6853#2 ------------------------------------------------------------
consensus_6853#1 ------------------------------------------------------------
consensus_6853#0 TGCCCTCGTCCCGTGGCTCGTCCAAGNCCCCCNTTCGTCACATTGTTTCTTCTTACTCAA 300
consensus_6853#2 ---------------------------------------------------------CAA 3
consensus_6853#1 -----GTTGGGGCTGAAGAAAGTGTTCTCCTTTTTTAAAGGCGCCCTGTGGTGTTGTGAA 55
**
consensus_6853#0 TCTTTGCAAAGTTCATGTATCACACATTTCTGAATCAANGTAAGCTTACGCGCTCGACTA 360
consensus_6853#2 TCTTTGCAAAGTTCATGTATCACACATTTCTGAATCAATGTAAGCTTACGCGCTCGACTA 63
consensus_6853#1 ATTTTCCCCGCCCCNTGTTTGAAAAGTGTATAAAATGGGGTTAAAATTGGGGCACAAATA 115
*** * * *** * * * * * * ** ** * * * ** * * **
consensus_6853#0 ATA--TAGTTATGTAG-ATTTGTATATAGGGTAGAGCTTATGCAGTAAATT-GTGTACGA 416
consensus_6853#2 ATA--TAGTTATGTAG-ATTTGTATATAGTGTAGAGCTTATGCAGTAAATTTGTGTACGA 120
consensus_6853#1 GGGGCCCACAATTTGGTGTTTGTTTAAACCCGAGAACCCAACCCCTGTGTGTGT-TAAGA 174
** * * ***** ** * *** * * * * * ** ** **
consensus_6853#0 TAGATATT--CATTCGATTAGCAAATAACG---CCCGCCCAAATAACGTCTTCCTCTAGC 471
consensus_6853#2 TAGATATT--CATTCGATTAGCAAATAACG---CCCGCCCAAATAACGTCTTCCTCTAGC 175
consensus_6853#1 AAAATTTTGGCGTNGGGGTAATATATAGNGTACCCCGNATAAATTGGGGGCCCNTANAAC 234
* ** ** * * * ** * *** * **** **** * * * * *
consensus_6853#0 AACAAGTAGATATTACCATTTGGGGAGAGAGATGGCGCTGGTGAACAAACCAAAACCTCC 531
consensus_6853#2 AACAAGTAGATATTACCATTTGGGGAGAGAGATGGCGCTGGTGAACAAACCAAAACCTCC 235
consensus_6853#1 CGCGGTTGAAAAGTTGAACACGTTTAACCCACCCGTG-TGGTTAAAATTTCCTTGTCCGG 293
* * * * * * * * * * **** ** * * *
consensus_6853#0 AAAACAAAACCCTTATGAGTATCCAGGCGCCTATACTACTTCCGCGCATCCTGTGTCCAC 591
consensus_6853#2 AAAACAAAACCCTTATGAGTATCCAGGCGCCTATACTACTTCCGCGCATCCTGTGTCCAC 295
consensus_6853#1 CCGGGAAACCGGTTTCCCTTGCCCCTTCCCTTGTTTTGTGTGGGCCCACCCTCTTTAGGC 353
*** * ** * ** * * * * * * ** ** *** * * *
consensus_6853#0 TACACGGGACGGGATCCCTAGAACTTCGCTGTCTGTGTACGCTACTGTAATCTTAGCTTT 651
consensus_6853#2 TACACGGGACGGGATCCCTAGAACTTCGCTGTCTGTGTACGCTACTGTAATCTTAGCTTT 355
consensus_6853#1 CNTTTAACCCGGGGTTTCCC---TTTTGTTATTTNT-TTTGCGATTTTTTTTTTTCGCCC 409
**** * * ** * * * * * * ** * * * * **
consensus_6853#0 ATCGCTAATTATGTATGCATGCATGTTACACACTTTAAATGTGAAAAACAAAATGGCAAC 711
consensus_6853#2 ATCGCTAATTATGTATGCATGCATGTTACACACTTTAAATGTGAAAAACAAAATGGCAAC 415
consensus_6853#1 AGGG--GNTTAAAAAGGCTTAAAAAAACCGGGCTGGATTTGCGTACAACCAGTNTTCGTG 467
* * *** * ** * * * ** * ** * * *** * *
consensus_6853#0 GTAATACTACACTTTATCTCGC--GACGTCTCCTCTTTTGCCCTAGCTAACGGTCTTTTT 769
consensus_6853#2 GTAATACTACACTTTATCTCGC--GACGTCTCCTCTTTTGCCCTAGCTAACG---TCTTT 470
consensus_6853#1 ACAACCCCGCCTTTTTTGCTGCTTGTTGCCGGCTTATTAGCAACATTAAGTG---GCAAA 524
** * * *** * ** * * * ** ** ** * * *
consensus_6853#0 TTGTTTTTGCGGTAAGCTAAAACCGGCTGATTCTACACATTCTACACCCCGCTTTTGCTG 829
consensus_6853#2 TTACCTCGGGGAT----------------------------------------------- 483
consensus_6853#1 CAACAAGGAAAACAAAATCGAATCAACACAAAACCAAGAGTGTGCCCCAGATAGTCGGAT 584
consensus_6853#0 CTGGTGGCGGCTATAGCACATTAGTGGCAACAACAAGGAAAACAAAAATCAATCACACAA 889
consensus_6853#2 ------------------------------------------------------------
consensus_6853#1 TCAATAGCCGGAAATTAATAATGCTCTGTCCTGTGCGAACGACAGCGCAATTTTGGTCCA 644
consensus_6853#0 ACCAAGAGTGTGCCCAGATAGTCGGATTCAATAGGCGGAATTAATAATGCTCTGTCCTGT 949
consensus_6853#2 ------------------------------------------------------------
consensus_6853#1 TCATATCGCAACCGTAAAACAGTTCAGACACACGTGTCATCGTTGGGTGTGCTTTGCGCA 704
consensus_6853#0 GCGAACGACAGCGCAATTTTGGTCCATCATATCGCAACCGTAAAACGTTCGACACACGTG 1009
consensus_6853#2 ------------------------------------------------------------
consensus_6853#1 AAAAGACATACACAAAACCGCACAGTTTGAGATGCAATATAAGTAATGGAAACACGCGCT 764
consensus_6853#0 TCTCGTTGGGTGTGCTTTGCGCAAAAAGACAACACAAAACCGCACAGTTTGAGATGCAAT 1069
consensus_6853#2 ------------------------------------------------------------
consensus_6853#1 CGAAAGAAAGTTCGAATGAAACAAAACGATGTAGCGAAANNNCGGGGGCGATCT------ 818
consensus_6853#0 ATAAGTAATGGAAACACGCGCTCGAACGAAAGTTCGAATGAAACAAAACGATTGTAGCGA 1129
consensus_6853#2 ------------------------------------------------------------
consensus_6853#1 ------------------------------------------------------------
consensus_6853#0 AAAGTTTAATTTGTTAAATCACGCTCTCAAATCATCAAACCCTTTAAATTTGGGAAGGAA 1189
consensus_6853#2 ------------------------------------------------------------
consensus_6853#1 ------------------------------------------------------------
consensus_6853#0 ATAATAAAGATAAAGAACGTTATCCTAAATAGCATTCGGGTGGTGTACTGTGTAAACAAA 1249
consensus_6853#2 ------------------------------------------------------------
consensus_6853#1 ------------------------------------------------------------
consensus_6853#0 CTATTACTGTTATGCTGGGAGCACGCGAGCTAATGCTTCGTAATAGACGCACGCCCTCT 1308
consensus_6853#2 -----------------------------------------------------------
consensus_6853#1 -----------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||