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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6854#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 2293 fasta sequence
[CTAGATTGCTGTTTGACTACTTGCTTACAGCGGACGTGTGTGAGCAGTGCGGTGCCGTGTTGCTGCCGTCACCGACCATCGAACAAGACGGTAGGGTACGCGCGCGTGGTGGAGTTTGAGTTTTTCGTACTCCAAGCTACTCCAAAAAGAGTCGTGATCGCGATCTCAAGGCTAGTCCTAAACCTCGATAGCTCCATTCACGGCTCAGTATCTGTGTGTTCGTCTCCCAGTGTGTGTCGATGTGTGAAAAGTACCCGTCACCAGCAGCAGCACCAACAGCGACACTACCAAGCGGAAACGGTTCCATCCACTGCGCAACCTACGGCGAATCTTCCGACG-CCGCACCGTATCGGCAGCGGACCGTGCGCCCGGCCAGCTCGGTGCGAAAGCCGCCGGCCCAACCCACATCCACTTCGCCACGCCCGGGTGTTCCACGACCGATGCGACGCTACCGCGCACCGGCTACCCGATCACGATTCGCAACGAGTCCGGCAC-GCACCGGGTACTTCCCAGGGCGGGCCCGGTGGGTACTTCAAGCGCGAAACGTACCGGCTGCGCAACTCCGATGATCTAGACAAGGAGATGTCCGATTACCAGCGCA-CCTAAGCGAAGGTCGACTTGTGGATAGTGACATAAGTCGCGATGGACTTTCACAGTCGCACGATAGCGTGTTCTCTGAATCGGCCGGTAC-GAAAGCAGTCTATCGCCCCCGCTAAAGAACGAGTTAGCAGACGTACTGCGTAAG-GAAGGAAAGACCGGCAGGGTGAAGTATCGGACGAAGATCTCGGCCTGCCGATGAGCCCCATCACGCCCCAGCGCAAGGATCGCGGCATGAACAAGAGCGAAGGTTCGCTCA-GCATACTGAGCATGACGAGCTCGGACCTGGACGACGACCGGTCCGCTTCGAACGCTAGCGGCCACAACCTGTTGCACCTGGATTCGTCCACCTCTGGCTCGATCAGTATGAATCGTTCAGAACATATGGATGAAAGTGGTGACTCATC-CAAGTTGAGCCATTCCGCCGCCAAAAAAAAACTTGCCGTACGACCAAAGAAAAAGGGCCCCACCCGTGCACGAACTCGCCCAAGAGAGTCAACCCTGTTGCCAGCGACGCCCGAAGTGAACGAGGAATCGTTGAAGCTGTCCTCCACCAACATCGCTTCCAGCTTTTCACCCACGAAGGAAGCGAACGAGAAGGCCCATTCGCTACCGTACGGCATTGTGCCACCGGGCACATCGACCCCATTCGCACCGAAATCGTCACCCGCCAAAGAGATTAGCACCTCGAAGCTATCGGTCGGCGATGCACCGGCGGTGACGGGCTCATCCATCTACGTCAATCGCAACATTTCCAAGAGCCATGAGTTTGAGCGTTCCGCAGACCATCATCATCTGACGGTGGAGGGTTCGGCTGTCCCAGCTGCCTCGCGCAAGGAAGACGATGGCTTCTTCAAGCGCATCCTGAACTACAGCTTCAAGAAGAAGAAGCACGAATCGGGCGCGAAGGAGGAATCATCGCACTCGGTGACGGCTTCCCCGCGCAAGGAAGACAACACGAGCAGCGTGTACATTAGCTCGGCCGATCCAGCTACTGTCGATTGTGTGCCAACGGAGCAGATCATGAAGCTATCGCTGGTTGTCGGTGAGCCGGAGCTGGGTGAGCTGAGCGGGTATAAGAAGATAAAGTCGGGTCCGGCCGCACGACAGCGCGTCTTCCCGAAAGATATCTTTACGGCTGAGGAGCAACAACTTCAGCAGCAGCAACAGCAGCAGCAGCATCAACAGCATACACAGCGCTACTCCTCTAATGTGGAGGTAAACAGACAGTCGGTTGCTTCGTCCAGCAGTGGCCATTCACTTACAGTCGGCGAAGCCAAGATGCCACTGCACAAGAGCGAAGAGTATCTCGTGTCCAAGACGCGCAAGTTCTCCGAGCGGTAGTGTAGACGGTGGGCGAAGGAGATGACGAAGAAAGCGATGGCCGCAAGTACGTTAGTCACGGCGAGCGGCTCAAAAGCCCGAAGGTGTACGGGTTGAGCTCGTACCAGCAAAAGCTGGCGAAAATCTCCATCTCGTCCCAACCGACGGCGGCGCCGGACGCGGCTAAGGATAGCCCAAGCAAGCGCGCCAAGTCGGTGGAAAAATCGAAAAGCTTCCGCACGTACACGACGGACGGTGTGTCGAATCAGCTGCAGGCAGGTGGTCACCAGGTACCAAGCCTGCCAAACCTGAGCGCTTCGCTGTCGGTGGGCAACTTCTCGAGCAACAACTTCCTCGAGACGGAGCACAAGTT]
[+] EMBL CNS08XZP [CTAGATTGCTGTTTGACTACTTGCTTACAGCGGACGTGTGTGAGCAGTGCGGTGCCGTGTTGCTGCCGTCACCGACCATCGAACAAGACGGTAGGGTACGCGCGCGTGGTGGAGTTTGAGTTTTTCGTACTCCAAGCTACTCCAAAAAGAGTCGTGATCGCGATCTCAAGGCTAGTCCTAAACCTCGATAGCTCCATTCACGGCTCAGTATCTGTGTGTTCGTCTCCCAGTGTGTGTCGATGTGTGAAAAGTACCCGTCACCAGCAGCAGCACCAACAGCGACACTACCAAGCGGAAACGGTTCCATCCACTGCGCAACCTACGGCGAATCTTCCGACG CCGCACCGTATCGGCAGCGGACCGTGCGCCCGGCCAGCTCGGTGCGAAAGCCGCCGGCCCAACCCACATCCACTTCGCCACGCCCGGGTGTTCCACGACCGATGCGACGCTACCGCGCACCGGCTACCCGATCACGATTCGCAACGAGTCCGGCAC GCACCGGGTACTTCCCAGGGCGGGCCCGGTGGGTACTTCAAGCGCGAAACGTACCGGCTGCGCAACTCCGATGATCTAGACAAGGAGATGTCCGATTACCAGCGCA CCTAAGCGAAGGTCGACTTGTGGATAGTGACATAAGTCGCGATGGACTTTCACAGTCGCACGATAGCGTGTTCTCTGAATCGGCCGGTAC GAAAGCAGTCTATCGCCCCCGCTAAAGAACGAGTTAGCAGACGTACTGCGTAAG GAAGGAAAGACCGGCAGGGTGAAGTATCGGACGAAGATCTCGGCCTGCCGATGAGCCCCATCACGCCCCAGCGCAAGGATCGCGGCATGAACAAGAGCGAAGGTTCGCTCA GCATACTGAGCATGACGAGCTCGGACCTGGACGACGACCGGTCCGCTTCGAACGCTAGCGGCCACAACCTGTTGCACCTGGATTCGTCCACCTCTGGCTCGATCAGTATGAATCGTTCAGAACATATGGATGAAAGTGGTGACTCATC CAAGT ]
[-] EMBL CNS08XZQ [ ACGTGTGTGAGCAGTGCGG GCCGTGTTGCTGCCGTCACCGACCATCGAACAAGACGGTAGGGTACGCGCGCGTGG GGAGTTTGAGTTTTTCGTACTCCAAGCTACTCCAAAAAGAGTCGTGATCGCGATCTCAAGGCTAGTCCTAAACCTCGATAGCTCCATTCACGGCTCAGTATCTGTGTGTTCGTGTCCCAGTGTGTGTCGATGTGTGAAAAGTACCCGTCACCAGCAGCAGCACCAACAGCGACACTACCAAGCGGAAACGGTTCCATCCACTGCGCAACCTACGGCGAATCTTCCGGCGCCCGCACCGTATCGGCAGCGGACCGTGCGCCCGGCCAGCTCGGTGCGAAAGCCGCCGGCCCAACCCACATCCACTTCGCCACGCCCGGGTGTTCCACGACCGATGCGACGCTACCGCGCACCGGCTACCCGATCACGATTCGCAACGAGTCCGGCACGGCACCGGGTACTTCCCAGGGCGGGCCCGGTGGGTACTTCAAGCGCGAAACGTACCGG TGCGCAACTCCGATGATCTAGACAAGGAGATGTCCGATTACCAGCGCAGCCTAAGCGAAGGTCGACTTGTGGATAGTGACATAAGTCGCGATGGACTTTCACAGTCGCACGATAGCGTGTTCTCTGAATCGGCCGGTACGGCAAGCAGTCTATCGATCACGCTAAAGAACGAGTTAGCAGACGTACTGCGTAAGCGAAGGAAAGACCGGCAGGGTGAAGTATCGGACGAAGATCTCGGCCTGCCGATGAGCCCCATCACGCCCCAGCGGAAGGATCGCGGCATGAACAAGAGCGAAGGTTCGCTCA GCATACTGAGCATGACGAGCTCGGACCTGGACGACGACCGGTCCGCTTCGAACGCTAGCGGCCACAACCTGTTGCACCTGGATTCGTCCACCTCTGGCTCGATCAGTATGAATCGTTCAGAACATATGGATGAAAGTGGTGACTCATCTCAAGTTGAGCCATTCCGCCGCCAAAAAAAAAC ]
[+] EMBL BM636539 [ cCGCCCACGCGT CCG GCATGACGAGCTCGGACCTGGACGACGACCGGTCCGCTTCGAACGCTAGCGGCCACAACCTGTTGCACCTGGATTCGTCCACCTCTGGCTCGATCAGTATGAATCGTTCAGAACATATGGATGAAAGTGGTGACTCATC CAAGTTGAGCCATTCCGCCGCCAAACACAAACTTGCCGTACGACCAAAGAAAAAGGGCCCCACCCGTGCACGAACTCGCCCAAGAGAGTCAACCCTGTTGCCAGCGACGCCCGAAGTGAACGAGGAATCGTTGAAGCTGTCCTCCACCAACATCGCTTCCAGCTTTTCACCCACGAAGGAAGCGAACGAGAAGGCCCATTCGCTACCGTACGGCATTGTGCCACCGGGCACATCGACCCCATTCGCACCGAAATCGTCACCCGCCAAAGAGATTAGCACCTCGAAGCTATCGGTCGGCGATGCACCGGCGGTGACGGGCTCATCCATCTACGTCAATCGCAACATTTCCAAGAGCCATGAGTTTGAGCGTTCCGCAGACCATCATCATCTGACGGTGGAGGGTTCGGCTGTCCCAGCTGCCTCGCGCAAGGAAGACGATGGCTT ]
[+] EMBL BM602115 [ cCGGTTGGCGATGCACCGGTGGTGACGGGCTCATCCATTTACGTCAATCGCAACATTTCCAAGAGCCATGAGTTTGAGCGTTCCGTCGACCATCATCATCTGACGGTGGAGGGTTCGGCTGTGCCGGTAGCCTCGCGCAAGGAAGACGATGGCTTCTTCAAGCGCATCCTGAACTACAGCTTCAAGAAGAAGAAGCACGAATCGGGCGCGAAGGAGGAATCATCGCACTCGGTGACGGCTTCCCCGCGCAAGGAAGACAACACGAGCAGCGTGTACATTAGCTCGGCCGATCCAGCTACTGTCGATTGTGTGCCAACGGAGCAGATCATGAAGCTATCGCTGGTTGTCGGTGAGCCGGAGCTGGGTGAGCTGAGCGGGTATAAGAAGATAAAGTCGGGTCCGGCCGCACGACAGCGCGTCTTCCCGAAAGATATCTTTACGGCTGAGGAGCAACAACTTCAGCAGCAGCAACAGCAGCAGCAGCATCAACAGCATACACAGCGCTACTCCTCTAATGTGGAGGTAAACAGACAGTCGGTTGCTTCGTCCAGCAGTGGCCATTCACTTACAGTCGGCGAAGCCAAGATGCCACTGCACAAGAGCGAAGAGTATCTCGTGTCCAAGACGCGCAAGTTCTCCGAGCGGTAGTGTAGACGGTGGGCGA ]
[+] EMBL BM646050 [ cCGGTGAGCCGGAGCTGAGTGAGCTGAGCGGGTATAAGAAGATAAAGTCGGGTCCGGCCGCACGGCAGCGCGTCTTCCCGAAGGATATTTTTACGGCTGAGGAGCAACAACTTCAGCAGCAGCAACAGCAGCAGCAGCATCAACAGCATACACAGCGCTACTCCTCTAATGTGGAGGTAAACAGACAGTCGGTTGCTTCGTCCGGCAGTGGCCATTCACTTATAGTCGGCGAAGCCAAGATGCCACTGCACAAGAGCGAAGAGTATCTCGTGTCCAAGACGCGCAAGTTCTCCGAGC GTAGTGTAGACGGT GGCGAAGGAGATGACGAAGAAAGCGATGGCCGCAAGTACGTTAGTCACGGCGAGCGGCTCAAAAGCCCGAAGGTGTACGGGTTGAGCTCGTACCAGCAAAAGCTGGCGAAAATCTCCATCTCGTCCCAACCGACGGCGGCGCCGGACGCGGCTAAGGATAGCCCAAGCAAGCGCGCCAAGTCGGTGGAAAAATCGAAAAGCTTCCGCACGTACACGACGGACGGTGTGTCGAATCAGCTGCAGGCAGGTGGTCACCAGGTACCAAGCCTGCCAAACCTGAGCGCTTCGCTGTCGGTGGGCAACTTCTCGAGCAACAACTTCCTCGAGACGGAGCACAAGTT]
consensusID : consensus_6854#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 142 fasta sequence
[CCGCGGACGCGTGGGCTTGCTTACAGCGGACGTGTGTGAGCAGTGCGGGCCGTGTTGCTGCCGTCACCGACCATCGAACAAGACGGTAGGGTACGGGCGCGTGGGTAGTTTGAGTTTTTCGTACTCCAAGTTACTCCAAAAA]
[+] EMBL BM614952 [CCGCGGACGCGTGGGCTTGCTTACAGCGGACGTGTGTGAGCAGTGCGGGCCGTGTTGCTGCCGTCACCGACCATCGAACAAGACGGTAGGGTACGGGCGCGTGGGTAGTTTGAGTTTTTCGTACTCCAAGTTACTCCAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6854#0 CTAGATTGCTGTTTGACTACTTGCTTACAGCGGACGTGTGTGAGCAGTGCGGTGCCGTGT 60
consensus_6854#1 --CCGCGGACGCGTGG--GCTTGCTTACAGCGGACGTGTGTGAGCAGTGCGG-GCCGTGT 55
* * ** ********************************* *******
consensus_6854#0 TGCTGCCGTCACCGACCATCGAACAAGACGGTAGGGTACGCGCGCGTGGTGGAGTTTGAG 120
consensus_6854#1 TGCTGCCGTCACCGACCATCGAACAAGACGGTAGGGTACGGGCGCGTGG-GTAGTTTGAG 114
**************************************** ******** * ********
consensus_6854#0 TTTTTCGTACTCCAAGCTACTCCAAAAAGAGTCGTGATCGCGATCTCAAGGCTAGTCCTA 180
consensus_6854#1 TTTTTCGTACTCCAAGTTACTCCAAAAA-------------------------------- 142
**************** ***********
consensus_6854#0 AACCTCGATAGCTCCATTCACGGCTCAGTATCTGTGTGTTCGTCTCCCAGTGTGTGTCGA 240
consensus_6854#1 ------------------------------------------------------------
consensus_6854#0 TGTGTGAAAAGTACCCGTCACCAGCAGCAGCACCAACAGCGACACTACCAAGCGGAAACG 300
consensus_6854#1 ------------------------------------------------------------
consensus_6854#0 GTTCCATCCACTGCGCAACCTACGGCGAATCTTCCGACGCCGCACCGTATCGGCAGCGGA 360
consensus_6854#1 ------------------------------------------------------------
consensus_6854#0 CCGTGCGCCCGGCCAGCTCGGTGCGAAAGCCGCCGGCCCAACCCACATCCACTTCGCCAC 420
consensus_6854#1 ------------------------------------------------------------
consensus_6854#0 GCCCGGGTGTTCCACGACCGATGCGACGCTACCGCGCACCGGCTACCCGATCACGATTCG 480
consensus_6854#1 ------------------------------------------------------------
consensus_6854#0 CAACGAGTCCGGCACGCACCGGGTACTTCCCAGGGCGGGCCCGGTGGGTACTTCAAGCGC 540
consensus_6854#1 ------------------------------------------------------------
consensus_6854#0 GAAACGTACCGGCTGCGCAACTCCGATGATCTAGACAAGGAGATGTCCGATTACCAGCGC 600
consensus_6854#1 ------------------------------------------------------------
consensus_6854#0 ACCTAAGCGAAGGTCGACTTGTGGATAGTGACATAAGTCGCGATGGACTTTCACAGTCGC 660
consensus_6854#1 ------------------------------------------------------------
consensus_6854#0 ACGATAGCGTGTTCTCTGAATCGGCCGGTACGAAAGCAGTCTATCGCCCCCGCTAAAGAA 720
consensus_6854#1 ------------------------------------------------------------
consensus_6854#0 CGAGTTAGCAGACGTACTGCGTAAGGAAGGAAAGACCGGCAGGGTGAAGTATCGGACGAA 780
consensus_6854#1 ------------------------------------------------------------
consensus_6854#0 GATCTCGGCCTGCCGATGAGCCCCATCACGCCCCAGCGCAAGGATCGCGGCATGAACAAG 840
consensus_6854#1 ------------------------------------------------------------
consensus_6854#0 AGCGAAGGTTCGCTCAGCATACTGAGCATGACGAGCTCGGACCTGGACGACGACCGGTCC 900
consensus_6854#1 ------------------------------------------------------------
consensus_6854#0 GCTTCGAACGCTAGCGGCCACAACCTGTTGCACCTGGATTCGTCCACCTCTGGCTCGATC 960
consensus_6854#1 ------------------------------------------------------------
consensus_6854#0 AGTATGAATCGTTCAGAACATATGGATGAAAGTGGTGACTCATCCAAGTTGAGCCATTCC 1020
consensus_6854#1 ------------------------------------------------------------
consensus_6854#0 GCCGCCAAAAAAAAACTTGCCGTACGACCAAAGAAAAAGGGCCCCACCCGTGCACGAACT 1080
consensus_6854#1 ------------------------------------------------------------
consensus_6854#0 CGCCCAAGAGAGTCAACCCTGTTGCCAGCGACGCCCGAAGTGAACGAGGAATCGTTGAAG 1140
consensus_6854#1 ------------------------------------------------------------
consensus_6854#0 CTGTCCTCCACCAACATCGCTTCCAGCTTTTCACCCACGAAGGAAGCGAACGAGAAGGCC 1200
consensus_6854#1 ------------------------------------------------------------
consensus_6854#0 CATTCGCTACCGTACGGCATTGTGCCACCGGGCACATCGACCCCATTCGCACCGAAATCG 1260
consensus_6854#1 ------------------------------------------------------------
consensus_6854#0 TCACCCGCCAAAGAGATTAGCACCTCGAAGCTATCGGTCGGCGATGCACCGGCGGTGACG 1320
consensus_6854#1 ------------------------------------------------------------
consensus_6854#0 GGCTCATCCATCTACGTCAATCGCAACATTTCCAAGAGCCATGAGTTTGAGCGTTCCGCA 1380
consensus_6854#1 ------------------------------------------------------------
consensus_6854#0 GACCATCATCATCTGACGGTGGAGGGTTCGGCTGTCCCAGCTGCCTCGCGCAAGGAAGAC 1440
consensus_6854#1 ------------------------------------------------------------
consensus_6854#0 GATGGCTTCTTCAAGCGCATCCTGAACTACAGCTTCAAGAAGAAGAAGCACGAATCGGGC 1500
consensus_6854#1 ------------------------------------------------------------
consensus_6854#0 GCGAAGGAGGAATCATCGCACTCGGTGACGGCTTCCCCGCGCAAGGAAGACAACACGAGC 1560
consensus_6854#1 ------------------------------------------------------------
consensus_6854#0 AGCGTGTACATTAGCTCGGCCGATCCAGCTACTGTCGATTGTGTGCCAACGGAGCAGATC 1620
consensus_6854#1 ------------------------------------------------------------
consensus_6854#0 ATGAAGCTATCGCTGGTTGTCGGTGAGCCGGAGCTGGGTGAGCTGAGCGGGTATAAGAAG 1680
consensus_6854#1 ------------------------------------------------------------
consensus_6854#0 ATAAAGTCGGGTCCGGCCGCACGACAGCGCGTCTTCCCGAAAGATATCTTTACGGCTGAG 1740
consensus_6854#1 ------------------------------------------------------------
consensus_6854#0 GAGCAACAACTTCAGCAGCAGCAACAGCAGCAGCAGCATCAACAGCATACACAGCGCTAC 1800
consensus_6854#1 ------------------------------------------------------------
consensus_6854#0 TCCTCTAATGTGGAGGTAAACAGACAGTCGGTTGCTTCGTCCAGCAGTGGCCATTCACTT 1860
consensus_6854#1 ------------------------------------------------------------
consensus_6854#0 ACAGTCGGCGAAGCCAAGATGCCACTGCACAAGAGCGAAGAGTATCTCGTGTCCAAGACG 1920
consensus_6854#1 ------------------------------------------------------------
consensus_6854#0 CGCAAGTTCTCCGAGCGGTAGTGTAGACGGTGGGCGAAGGAGATGACGAAGAAAGCGATG 1980
consensus_6854#1 ------------------------------------------------------------
consensus_6854#0 GCCGCAAGTACGTTAGTCACGGCGAGCGGCTCAAAAGCCCGAAGGTGTACGGGTTGAGCT 2040
consensus_6854#1 ------------------------------------------------------------
consensus_6854#0 CGTACCAGCAAAAGCTGGCGAAAATCTCCATCTCGTCCCAACCGACGGCGGCGCCGGACG 2100
consensus_6854#1 ------------------------------------------------------------
consensus_6854#0 CGGCTAAGGATAGCCCAAGCAAGCGCGCCAAGTCGGTGGAAAAATCGAAAAGCTTCCGCA 2160
consensus_6854#1 ------------------------------------------------------------
consensus_6854#0 CGTACACGACGGACGGTGTGTCGAATCAGCTGCAGGCAGGTGGTCACCAGGTACCAAGCC 2220
consensus_6854#1 ------------------------------------------------------------
consensus_6854#0 TGCCAAACCTGAGCGCTTCGCTGTCGGTGGGCAACTTCTCGAGCAACAACTTCCTCGAGA 2280
consensus_6854#1 ------------------------------------------------------------
consensus_6854#0 CGGAGCACAAGTT 2293
consensus_6854#1 -------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||