cluster # 6856

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Anopheles gambiae
cluster # 6856 cluster # 6856 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6856#0 length = 671 sequences # 5

consensus_6856#1 length = 399 sequences # 1

consensusID : consensus_6856#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 671
fasta sequence

                              [CCGGGTCCCGCG--CTTTCTGTATC-GTTTGGGAAAATAAAAAAGTTACAAAATGAGTC-GTGCACTAAACCTTAGCAATTTCCCTCCCAGCGCTGAAGTGATTGGGTTCTCAGCCCGCGATCATTATCC-GGATATAGTGTTTACAC-GTGAAATGTTGCACCCTCCCG-GACACAGCC-G-GC-GGTCGGAGAGTAC-GCGCGATGTGATGGTGCCC-GTGACGGAGTCGCTTCC-GAAGCGCATACTGGCCATCTTTATGGAGCTCGGTTTGCTCGAAGCGCTC-GGC-GAA-GC-GACCCAGTCC-GAGTCACGGTTTG--TTGCCC-GTGCC-GCCACCTACCTGCAAATGA-TTGGCC-GACGGTTCAAGCAGTACTGGCAGTC-GTACCC-GTGC-GAAC-TGTCCATGGATCTGGTGGCAAAGCACTCGCAAACACGCAACTGGCAGAAGAGTACGATACGCTGTCTGAGTTGGCATCCGCTGTGCTTCAAGCTGGCCGTTGCGACCATCGACGATACGGTGCGTATCTACACGCGCAACCCCGGCGTAACGCCGATCCTGCGCAGCAGTCTCCAGAAAGCCGTTACTTGTCTCGCTTGGCGACCGTACACCGGAGGCGAGCTTGCGATCGGATGCCAAAGCGGCGTGCTCATCTGGAGCGTCGATCCGACGAGCCAGATTACGCGGCCCC]

[+] EMBL BM585589             [CCGGGTCAATCG  CTTTCTGTATC GTTTGGGAAAATAAAAAAGTTACAAAATGAGTC GTGCACTAAACCTTAGCAATTTCCCTCCCAGCGCTGAAGTGATTGGGTTCTCAGCCCGCGATCATTATCC GGATATAGTGTTTACAC GTGAAATGTTGCACCCTCCCG GACACAGCC G GC GGTCGGAGAGTAC GCGCGATGTGATGGTGCCC GTGACGGAGTCGCTTCC GAAGCGCATACTGGCCATCTTTATGGAGCTCGGTTTGCTCGAAGCGCTC GGC GAA GC GACCCAGTCC GAGTCACGGTTTG  TTGCCC GTGCC GCCACCTACCTGCAAATGA TTGGCC GACGGTTCAAGCAGTACTGGCAGTC GTACCC GTGC GAAC TGTCCATGGATCTGGTGGCAAAGCACTCGCAAACACGCAACTGGCAGAAGAGTAC                                                                                                                                                                                                                                            ]
[+] EMBL AL931109             [    cgCCCGAGGTCTTTCTGTATCTGTTTGGGAAAAT AAAAAGTTACAAAATGAGTCTGTGCACTAAACCTTAGCAATTTCCCTCCCAGCGCTGAAGTGATTGGGTTCTCAGCCCGCGATCATTATCCTGGATATAGTGTTTACACTGTGAAATGTTGCACCCTCCCGNGACACAGCCTGNGCTGGTCGGAGAGTACTGCGCGATGTGATGGTGCCCTGTGACGGAGTCGCTTCCTGAAGCGCATACTGGCCATCTTTATGGAGCTCGGTTTGCTCGAAGCGCTCTGGCTGAATGCTGACCCAGTCCTGAGTCACGGTTTGTATTGCCCTGTGCCTGCCACCTACCTGCAAATGATTTGGCCTGACGGTTCAAGCAGTACTGGCAGTCTGTACCCTGTGCTGAACTTGTCCATGGATCTGGTGGCAAAGCACTCGCAAACACGCAACTGGCAGAAGAGTACGATACGCTGTCTGAGTTGGCATCCGCTGT                                                                                                                                                                                                               ]
[+] EMBL BM602557             [       CCGCG  CTTTCTGTATC GTTTGGGAAAATAAAAAAGTTACAAAATGAGTC GTGCACTAAACCTTAGCAATTTCCCTCCCAGCGCTGAAGTGATTGGGTTCTCAGCCCGCGATCATTATCC GGATATAGTGTTTACAC GTGAAATGTTGCACCCTCCCG GACACAGCC G GC GGTCGGAGAGTAC GCGCGATGTGATGGTGCCC GTGACGGAGTCGCTTCC GAAGCGCATACTGGCCATCTTTATGGAGCTCGGTTTGCTCGAAGCGCTC GGC GAA GC GACCCAGTCC GAGTCACGGTTTG  TTGCCC GTGCC GCCACCTACCTGCAAATGA TTGGCC GACGGTTCAAGCAGTACTGGCAGTC GTACCC GTGC GAAC TGTCCATGGATCTGGTGGCAAAGCACTCGCAAACACGCAACTGGCAGAAGAGTACGATACGCTGTCTGAGTTGGCATCCGCTGTGCTTCAAGCTGGCCGTTGCGACCATCGACGATACGGTGCGTATCTACACGCGCAACCCCGGCGTAACGCCGATCCTGCGCAGCAGTCTCCAGAAAGCCGTTACTTGTCTCGCTTGGCGACCGTACACCGGAGGCGAGCTTGCGATCGGATGCCAAAGCGGCGTGCTCATCTGGAGCGTCGATCCGACGAGCCAGATTACGCGGCCCC]
[+] EMBL BX620298             [                                                                             AATTTCCCTCCCAGCGCTGAAGTGATTGGGTTCTCAGCCCGCGATCATTATCC GGATATAGTGNNTACAC GTGAAATGTTGCACCCTCCCG GACACAGCC G GC GGTCGGAGAGTAC GCGCGATGTGATGGTGCCC GTGACGGAGTCGCTTCC GAAGCGCATACTGGCCATCTTTATGGAGCTCGGTTTGCTCGAAGCGCTC GGC GAA GC GACCCAGTCC GAGTCACGGTTTG  TTGCCC GTGCC GCCACCTACTTGCAAATGA TTGGCC GACGGTTCAAGCAGTACTGGCAGTC GTACCC ATGC GAAC TGTCCATGGATCTGGTGGCAAAGCACTCGCAAACACGCAACTGGCAGAAGAGTACGATACGCTGTCTGAGTTGGCATCCGCTGTGCTTCAAGCTGGCCGTTGCGACCATCGACGATACGGTGCGTATCTTCACGCGCAACCCCGGCGTAACGCCGATCCTGCGCAGCAGTCTCCAGAAAGCCGTTACTTGTCTCGCTTGGCGACCGTACACCGGAGGCGAGCTTGCGATCGGATGCCAAAGCGGCGTGCTCATCTGGAGCGTCGATCCGACGAGCCA              ]
[+] EMBL AGA284918            [                                                                                                AAGTGATTGGGTTCTCAGCCCGCGATCATTATCC GGATATAGTGTTTACAC GTGAAATGTTGCACCCTCCCG GACACAGCC G GC GGTCGGAGAGTAC GCGCGATGTGATGGTGCCC GTGACGGAGTCGCTTCC GAAGCGCATACTGGCCATCTTTATGGAGCTCGGTTTGCTCGAAGCGCTC GGC GAA GC GACCCAGTC                                                                                                                                                                                                                                                                                                                                                                                                       ]




>consensus_6856#0
CCGGGTCCCGCGCTTTCTGTATCGTTTGGGAAAATAAAAAAGTTACAAAATGAGTCGTGC
ACTAAACCTTAGCAATTTCCCTCCCAGCGCTGAAGTGATTGGGTTCTCAGCCCGCGATCA
TTATCCGGATATAGTGTTTACACGTGAAATGTTGCACCCTCCCGGACACAGCCGGCGGTC
GGAGAGTACGCGCGATGTGATGGTGCCCGTGACGGAGTCGCTTCCGAAGCGCATACTGGC
CATCTTTATGGAGCTCGGTTTGCTCGAAGCGCTCGGCGAAGCGACCCAGTCCGAGTCACG
GTTTGTTGCCCGTGCCGCCACCTACCTGCAAATGATTGGCCGACGGTTCAAGCAGTACTG
GCAGTCGTACCCGTGCGAACTGTCCATGGATCTGGTGGCAAAGCACTCGCAAACACGCAA
CTGGCAGAAGAGTACGATACGCTGTCTGAGTTGGCATCCGCTGTGCTTCAAGCTGGCCGT
TGCGACCATCGACGATACGGTGCGTATCTACACGCGCAACCCCGGCGTAACGCCGATCCT
GCGCAGCAGTCTCCAGAAAGCCGTTACTTGTCTCGCTTGGCGACCGTACACCGGAGGCGA
GCTTGCGATCGGATGCCAAAGCGGCGTGCTCATCTGGAGCGTCGATCCGACGAGCCAGAT
TACGCGGCCCC

consensusID : consensus_6856#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 399
fasta sequence

                              [CAAGAATTGCCCGAGGTTTAACTGGCAGAAGAGCACGATACGCTGTCTGAGTTGGCATCGCTGTGCTTCAAGCTGGCCGTTGCGACCATCGACGATACGGTGCGTATCTACACGCGCAACCCCGGCGTAACGCCGATCCTGCGCAGCAGTCTCCAGAAAGCCGTTACCTGTCTCGCTTGGCGACCGTACACCGGAGGCGAGCTTGCGATCGGATGCCAAAGCGGGTGCTCATCTGGACGCGTCTGATCCTGACGAGCCAGATTACGCGGCCCTCTCGCAGGCGGTTCATTTGCAGCCACCGGACGGACCAACCGGTCACCGCCGTTAGCTGGAGGCAGTAACGGAGAGCTGCTGGTGACGGCCAGCATCCAACCGACACGCATCTTGCTCGTGTGGAAC]

[+] EMBL AL696070             [CAAGAATTGCCCGAGGTTTAACTGGCAGAAGAGCACGATACGCTGTCTGAGTTGGCATCGCTGTGCTTCAAGCTGGCCGTTGCGACCATCGACGATACGGTGCGTATCTACACGCGCAACCCCGGCGTAACGCCGATCCTGCGCAGCAGTCTCCAGAAAGCCGTTACCTGTCTCGCTTGGCGACCGTACACCGGAGGCGAGCTTGCGATCGGATGCCAAAGCGGGTGCTCATCTGGACGCGTCTGATCCTGACGAGCCAGATTACGCGGCCCTCTCGCAGGCGGTTCATTTGCAGCCACCGGACGGACCAACCGGTCACCGCCGTTAGCTGGAGGCAGTAACGGAGAGCTGCTGGTGACGGCCAGCATCCAACCGACACGCATCTTGCTCGTGTGGAAC]




>consensus_6856#1
CAAGAATTGCCCGAGGTTTAACTGGCAGAAGAGCACGATACGCTGTCTGAGTTGGCATCG
CTGTGCTTCAAGCTGGCCGTTGCGACCATCGACGATACGGTGCGTATCTACACGCGCAAC
CCCGGCGTAACGCCGATCCTGCGCAGCAGTCTCCAGAAAGCCGTTACCTGTCTCGCTTGG
CGACCGTACACCGGAGGCGAGCTTGCGATCGGATGCCAAAGCGGGTGCTCATCTGGACGC
GTCTGATCCTGACGAGCCAGATTACGCGGCCCTCTCGCAGGCGGTTCATTTGCAGCCACC
GGACGGACCAACCGGTCACCGCCGTTAGCTGGAGGCAGTAACGGAGAGCTGCTGGTGACG
GCCAGCATCCAACCGACACGCATCTTGCTCGTGTGGAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6856#0      CCGGGTCCCGCGCTTTCTGTATCGTTTGGGAAAATAAAAAAGTTACAAAATGAGTCGTGC 60
consensus_6856#1      ------------------------------------------------------------
                                                                                  

consensus_6856#0      ACTAAACCTTAGCAATTTCCCTCCCAGCGCTGAAGTGATTGGGTTCTCAGCCCGCGATCA 120
consensus_6856#1      ------------------------------------------------------------
                                                                                  

consensus_6856#0      TTATCCGGATATAGTGTTTACACGTGAAATGTTGCACCCTCCCGGACACAGCCGGCGGTC 180
consensus_6856#1      ------------------------------------------------------------
                                                                                  

consensus_6856#0      GGAGAGTACGCGCGATGTGATGGTGCCCGTGACGGAGTCGCTTCCGAAGCGCATACTGGC 240
consensus_6856#1      ------------------------------------------------------------
                                                                                  

consensus_6856#0      CATCTTTATGGAGCTCGGTTTGCTCGAAGCGCTCGGCGAAGCGACCCAGTCCGAGTCACG 300
consensus_6856#1      ------------------------------------------------------------
                                                                                  

consensus_6856#0      GTTTGTTGCCCGTGCCGCCACCTACCTGCAAATGATTGGCCGACGGTTCAAGCAGTACTG 360
consensus_6856#1      ------------------------------------------------------------
                                                                                  

consensus_6856#0      GCAGTCGTACCCGTGCGAACTGTCCATGGATCTGGTGGCAAAGCACTCGCAAACACGCAA 420
consensus_6856#1      ---------------------------------------CAAGAATTGCCCGAGGTTTAA 21
                                                              *** * *  *  *     **

consensus_6856#0      CTGGCAGAAGAGTACGATACGCTGTCTGAGTTGGCATCCGCTGTGCTTCAAGCTGGCCGT 480
consensus_6856#1      CTGGCAGAAGAGCACGATACGCTGTCTGAGTTGGCATC-GCTGTGCTTCAAGCTGGCCGT 80
                      ************ ************************* *********************

consensus_6856#0      TGCGACCATCGACGATACGGTGCGTATCTACACGCGCAACCCCGGCGTAACGCCGATCCT 540
consensus_6856#1      TGCGACCATCGACGATACGGTGCGTATCTACACGCGCAACCCCGGCGTAACGCCGATCCT 140
                      ************************************************************

consensus_6856#0      GCGCAGCAGTCTCCAGAAAGCCGTTACTTGTCTCGCTTGGCGACCGTACACCGGAGGCGA 600
consensus_6856#1      GCGCAGCAGTCTCCAGAAAGCCGTTACCTGTCTCGCTTGGCGACCGTACACCGGAGGCGA 200
                      *************************** ********************************

consensus_6856#0      GCTTGCGATCGGATGCCAAAGCGGCGTGCTCATCTGGA-GCGTC-GATCC-GACGAGCCA 657
consensus_6856#1      GCTTGCGATCGGATGCCAAAGCGG-GTGCTCATCTGGACGCGTCTGATCCTGACGAGCCA 259
                      ************************ ************* ***** ***** *********

consensus_6856#0      GATTACGCGGCCCC---------------------------------------------- 671
consensus_6856#1      GATTACGCGGCCCTCTCGCAGGCGGTTCATTTGCAGCCACCGGACGGACCAACCGGTCAC 319
                      *************                                               

consensus_6856#0      ------------------------------------------------------------
consensus_6856#1      CGCCGTTAGCTGGAGGCAGTAACGGAGAGCTGCTGGTGACGGCCAGCATCCAACCGACAC 379
                                                                                  

consensus_6856#0      --------------------
consensus_6856#1      GCATCTTGCTCGTGTGGAAC 399