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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6857#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 907 fasta sequence
[CGGTTATNATATATTGCTGTACTNTGCCATGTGCNTGATANTGGGCTACATTGTNTTACTGGTGTATCAGGTGTTGCTGTACGAGGAGCAACAGCTGGTGCGGTGTATAGCGACACCCGATTACAATAACCTCCGAAGTGCATCGCGTAGCACCACGGCAACGAACAATACCGTACCAGACAGACATACNGGTGCTATACTATATCAAAGGTTCATACNGACCTGGGACNGCTNGGCCGTATTCCTGGTCGANATTGCCTGACTTGCGCTTACCCTANAATCGGTCTTATCCCCGGGGCNNACCCGGTATACCCCTTTGACACCAGACCGTAGCAATTAGNAGGAAGCTAGAATACGCGGTAACATACCCACAAGGAGGTACACCGGATTTAGNGAACCNCCCGAAAGCTGGTTCNTGGACATATGGCTCTAGGCCAANCANCGGGAAGACGACCGAAACACCAATTATGGGTCCTGGANTNTGCGCTGGTGANNCCAAAAATNATTACACTGGTGGGNACCCCTATACCACTATGCNCGGACTCACGGCCATATCNCAAAGGANATANTACCCCNGGATTTNCACCTAANAGCTCCAAATGTACTGTGAGATNGACTTACTGGAGGTCGAATTAACGCGTACCCGCCCCGGNCCTTTTGACGTTTGACCTTATGACGACCAGGGGGCAGATCCTGGGCGCGAAAGGGACAGTCAATTCGAAATATGAGATTACCCCGCTAATCACCNATCCAATGTTCCTTATAACACAAGCCACAACCGTGTTGGGTGATACACACAAAGGTCACAACTACTACCGGCTGTAACCCCCAAGAGTCTGGACACCGCAAGTGACGCAACCCCTATACAACACAAAAAGAACNCCGCNGACAACCTCTACTGACATAA]
[+] EMBL AL693313 [CGGTTATNATATATTGCTGTACTNTGCCATGTGCNTGATANTGGGCTACATTGTNTTACTGGTGTATCAGGTGTTGCTGTACGAGGAGCAACAGCTGGTGCGGTGTATAGCGACACCCGATTACAATAACCTCCGAAGTGCATCGCGTAGCACCACGGCAACGAACAATACCGTACCAGACAGACATACNGGTGCTATACTATATCAAAGGTTCATACNGACCTGGGACNGCTNGGCCGTATTCCTGGTCGANATTGCCTGACTTGCGCTTACCCTANAATCGGTCTTATCCCCGGGGCNNACCCGGTATACCCCTTTGACACCAGACCGTAGCAATTAGNAGGAAGCTAGAATACGCGGTAACATACCCACAAGGAGGTACACCGGATTTAGNGAACCNCCCGAAAGCTGGTTCNTGGACATATGGCTCTAGGCCAANCANCGGGAAGACGACCGAAACACCAATTATGGGTCCTGGANTNTGCGCTGGTGANNCCAAAAATNATTACACTGGTGGGNACCCCTATACCACTATGCNCGGACTCACGGCCATATCNCAAAGGANATANTACCCCNGGATTTNCACCTAANAGCTCCAAATGTACTGTGAGATNGACTTACTGGAGGTCGAATTAACGCGTACCCGCCCCGGNCCTTTTGACGTTTGACCTTATGACGACCAGGGGGCAGATCCTGGGCGCGAAAGGGACAGTCAATTCGAAATATGAGATTACCCCGCTAATCACCNATCCAATGTTCCTTATAACACAAGCCACAACCGTGTTGGGTGATACACACAAAGGTCACAACTACTACCGGCTGTAACCCCCAAGAGTCTGGACACCGCAAGTGACGCAACCCCTATACAACACAAAAAGAACNCCGCNGACAACCTCTACTGACATAA]
consensusID : consensus_6857#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 871 fasta sequence
[CCGAGGTTACAGCAAACAAAAGGTGATCATATCGGTTGCTTTTCTCCTCTTCACGGAAAGTTTGCTCGCTGTAGAAAATACCGCGATCGAATCGTAGAGTTAGTTAACCTTGAAAGTAGCTACCGCCAAAGAGCAGTGTTCGTTTGCGAAACGTTTCCGTTTGTAGCGAGAATAAAATTTAGTTAGCGATGGATATGATTGCTGTAGTTGGCAGTGCCATGATAGTGGGCTTCATTGTTTACTGGTGTATCAGGTGTTGCTGTACGAGGAGCAACAGTGGTGCGGTGTTAGCGACACCCATTACAATAACCTCCGAAGTGCATCGCGTTGCACCACCGGGAACGACACAAACCGTACCACCACCATCCGGTGCTATCATTCAAGGTCATCCGACCGGGACGGCGGCGTATCCGGCAATGCCGACTGCGTACCCAACGTCTTCCCCGGCACCGTACCCTGCCCAGCCGTACATGCAGCACTATCCGTATCAAACGTCCGCTGCCCCAACGTCGATGCCACCACCGCAGCCGA-ACACTGCCGCTTCCGTCCAATTTCCGGCCCTTCCTTCGCAGATGCAGATTCCGATACTACCATCGGCCTCGGCTCCTCCCGCTGGTGCTGCCGGACCGGCAGCGAT-GATGAATCCTCCCAGCTACGACCAAGTGGTAAACAACTCGTACCCAGTGCAGGCACCTTACAATCCCGACTTCAAAGGCTAAACGACGATGGCCGTACGGGCCCCTGGAGAGGAGACTTAAAGTTCAGGAACAAACGGTGAACCACAGTGAACCACACGCTGGAGGCGGTTTAGGAAAGAAAGCTTTCCTAGTGCCATCCTAGACGAGCAACTAGCGTAATTGTCGCCGTGTTA]
[+] EMBL AL695301 [CCGAGGTTACAGCAAACAAAAGGTGATCATATCGGTTGCTTTTCTCCTCTTCACGGAAAGTTTGCTCGCTGTAGAAAATACCGCGATCGAATCGTA AGTTAGTTNACCTTGAAAGTAGCTACCGCCAAAGAGCAGTGTTCGTTTGCGAAACGTTTCCGTTTGTAGCGAGAATAAAATTTA TTAGCGATGGATATGATTGCTGTA TTGGCAGTGCCATGATAGTGGGCTTCATTGTTTACTGGTGTATCAGGTGTTGCTGTACGAGGAGCAACAGTGGTGCGGTGTTAGCGACACCCATTACAATAACCTCCGAAGTGCATCGCGTTGCACCACCGGGAACGACACAAACCGTACCACCACCATCCGGTGCTATCATTCAAGGTCATCCGACCGGGACGGCGGCGTATCCGGCAATGCCGACTG GTA CCAACGTCTTCCCCGG A CGTAACCTGCCCAGCCGTACATGCAGCACTATCCGTATCACACGTCCGCTGCCCCAACGTCGATGCCACCACCGCAG CGACACACTG CG TTCCGT CAATTTACGGCCCTT CTTCGCA ATGNNGNT CGATA TACAATCAGGCTCGG TCCTCCCG TGGTGCTGC GACCGG AGCGATAGATGAATC ]
[+] EMBL BM640862 [ ccgCGGAAAGTTTGCTCGCTGTAGAAAATACCGCGATCGAATCGTAGAGTTAGTTAACCTTGAAAGTAGCTACCGCCAAAGAGCAGTGTTCGTTTGCGAAACGTTTCCGTTTGTAGCGAGAATAAAATTTAGTTAGCGATGGATATGATTGCTGTAGTTGGCAGTGCCATGATAGTGGGCTTCATTGTTTACTGGTGTATCAGGTGTTGCTGTACGAGGAGCAACAGTGGTGCGGTGTTAGCGACACCCATTACAATAACCTCCGAAGTGCATCGCGTTGCACCACCGGGAACGACACAAACCGTACCACCACCATCCGGTGCTATCATTCAAGGTCATCCGACCGGGACGGCGGCGTATCCGGCAATGCCGACTGCGTACCCAACGTCTTCCCCGGCACCGTACCCTGCCCAGCCGTACATGCAGCACTATCCGTATCAAACGTCCGCTGCCCCAACGTCGATGCCACCACCGCAGCCGA ACACTGCCGCTTCCGTCCAATTTCCGGCCCTTCCTTCGCAGATGCAGATTCCGATACTACCATCGGCCTCGGCTCCTCCCGCTGGTGCTGCCGGACCGGCAGCGAT GATGAATCCTCCCAGCTACGACCAAGTGGTAAACAACTCGTACCCAGTGCAGGCACCTTACAATCCC ]
[+] EMBL BX613396 [ TCGTAGATTTAGTTAACCTTGAAAGTAGCTACCGCCAAAGAGCAGTGTTCGTTTGCGAAACGTTTCCGTTTGTAGCGAGAATAAAATTTAGTTAGCGATGGATATGATTGCTGTAGTTGGCAGTGCCATGATAGTGGGCTTCATTGTTTACTGGTGTATCAGGTGTTGCTGTACGAGGAGCAACAGTGGTGCGGTGTTAGCGACACCCATTACAATAACCTCCGAAGTGCATCGCGTTGCACCACCGGGAACGACACAAACCGTACCACCACCATCCGGTGCTATCATTCAAGGTCATCCGACCGGGACGGCGGCGTATCCGGCAATGCCGACTGCGTACCCAACGTCTTCCCCGGCACCGTACCCTGCCCAGCCGTACATGCAGCACTATCCGTATCAAACGTCCGCTGCCCCAACGTCGATGCCACCACCGCAGCCGA ACACTGCCGCTTCCGTCCAATTTCCGGCCCTTCCTTCGCAGATGCAGATTCCGATACTACCATCGGCCTCGGCTCCTCCCGCTGGTGCTGCCGGACCGGCAGCGAT GATGAATCCTCCCAGCTACGACCAAGTGGTAAACAACTCGTACCCAGTGCAGGCACCTTACAATCCCGACTTCAAAGGCTAAACGACGATGGCCGTACGGGCCCCTGGAGAGGAGACTTAAAGTTCAGGAACAAACGGTGAACCACAGTGAACCACACGCTGGAGGCGGTTTAGGAAAGAAAGCTTTCCTAGTGCCATCCTAGACGAGCAACTAGCGTAATTGTCGCCGTGTTA]
consensusID : consensus_6857#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 718 fasta sequence
[CAGAATTCNCCACGAGGTCNACGATCGAATCGTAGAGTTAGTTAACCTTGAAAGTAGCTACCGCCAAAGAGCAGTGTTCGTTTGCGAAACGTTTCCGTTTGTAGCGAGAATAAAATTTAGTTAGCGATGGATATGATTGCTGTAGTTGGCAGTGCCATGATAGTGGGCTTCATTGTTTACTGGTGTATCAGGTGTTGCTGTACGAGGAGCAACAGTGGTGCGGTGTTAGCGACACCCATTACAATAACCTCCGAAGTGCATCGCGTTGCACCACCGGGAACGACACAAACCGTACCACCACCATCCGGTGCTATCATTCAAGGTCATCCGACCGGGACGGCGGCGTATCCGGCAATGCCGACTGCGTACCCAACGTCTTCCCCGGCACCGTACCCTGCCCAGCCGTACATGCAGCACTATCCGTATCAAACGTCCGCTGCCCCAACGTCGATGCCACCACCGCAGCCGAACACTGCCGCTTCCGTCCAATTTCCGGCCCTTCCTTCGCAGATGCAGATTCCGATACTACCATCGGCTCGGCTCCTCCCGCTGGTGCTGCCGGACCGGCAGCGATGATGAATCCTCCCAGCTACGACCAAGTGGTAAACAACTCGTACCCAGGTGCAGGCACCTTACAATCCCGACTTCAAAGGCTAAACGACGATTGCCGTACGGGCCCCTGNAGAGGAGACTTAAAGNTTCAGGAGACCAACGGTGA]
[+] EMBL BX466147 [CAGAATTCNCCACGAGGTCNACGATCGAATCGTAGAGTTAGTTAACCTTGAAAGTAGCTACCGCCAAAGAGCAGTGTTCGTTTGCGAAACGTTTCCGTTTGTAGCGAGAATAAAATTTAGTTAGCGATGGATATGATTGCTGTAGTTGGCAGTGCCATGATAGTGGGCTTCATTGTTTACTGGTGTATCAGGTGTTGCTGTACGAGGAGCAACAGTGGTGCGGTGTTAGCGACACCCATTACAATAACCTCCGAAGTGCATCGCGTTGCACCACCGGGAACGACACAAACCGTACCACCACCATCCGGTGCTATCATTCAAGGTCATCCGACCGGGACGGCGGCGTATCCGGCAATGCCGACTGCGTACCCAACGTCTTCCCCGGCACCGTACCCTGCCCAGCCGTACATGCAGCACTATCCGTATCAAACGTCCGCTGCCCCAACGTCGATGCCACCACCGCAGCCGAACACTGCCGCTTCCGTCCAATTTCCGGCCCTTCCTTCGCAGATGCAGATTCCGATACTACCATCGGCTCGGCTCCTCCCGCTGGTGCTGCCGGACCGGCAGCGATGATGAATCCTCCCAGCTACGACCAAGTGGTAAACAACTCGTACCCAGGTGCAGGCACCTTACAATCCCGACTTCAAAGGCTAAACGACGATTGCCGTACGGGCCCCTGNAGAGGAGACTTAAAGNTTCAGGAGACCAACGGTGA]
[+] EMBL AGA284869 [ AAAATTTAGTTAGCGATGGATATGATTGCTGTAGTTGGCAGTGCCATGATAGTGGGCTTCATTGTTTACTGGTGTATCAGGTGTTGCTGTACGAGGAGCAACAGTGGTGCGGTGTTAGCGACACCCATTACAATAACCTCCGAAGTGCATCGCGTTGCACCACCGGGAACGACACAAACCGTACCACCACCATCCGGTGCTATCATTCAAGGTCATCCGACCGGGACGGCGGCGTATCCGGCAATGCCGACTGCGTACCCAACG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6857#1 -------CCGAGGTTACAGCAAACAAAAGGTGATCATATCGGTTGCTTTTCTCCTCTTCA 53
consensus_6857#2 ------------------------------------------------------------
consensus_6857#0 CGGTTATNATATATTGCTGTAC-TNTGCCATGTGCNTGATANTGGGCTACATTGTNTTAC 59
consensus_6857#1 CGGAAAGTTTGCT--CGCTGTAGAAAATACCGCGATCGAATCGTAGAGTTAGTTAACCTT 111
consensus_6857#2 --------CAGAA--TTCNCCACGAGGT-CNACGATCGAATCGTAGAGTTAGTTAACCTT 49
consensus_6857#0 TGGTGTATCAGGTGTTGCTGTACGAGGAGCAACAGCTGGTGCGGTGTAT-AGCGACACCC 118
* * * * * * * ** * * ** * *
consensus_6857#1 GAAAGTAGCTACCGCCAAAGAGCA--GTGTTCGTTTGCGA-----AACGTTTCCGTTTGT 164
consensus_6857#2 GAAAGTAGCTACCGCCAAAGAGCA--GTGTTCGTTTGCGA-----AACGTTTCCGTTTGT 102
consensus_6857#0 GATTACAATAACCTCCGAAGTGCATCGCGTAGCACCACGGCAACGAACAATACCGTACCA 178
** * *** ** *** *** * ** ** *** * ****
consensus_6857#1 AGCGAGAATAAAATT----TAGT-TAGCGATGGAT-ATGATTGCTGTAGTTGGCAGTGCC 218
consensus_6857#2 AGCGAGAATAAAATT----TAGT-TAGCGATGGAT-ATGATTGCTGTAGTTGGCAGTGCC 156
consensus_6857#0 GACAGACATACNGGTGCTATACTATATCAAAGGTTCATACNGACCTGGGACNGCTNGGCC 238
* *** * ** * ** * * ** * ** * * ** ***
consensus_6857#1 ATGATAGTGGGCTTCATTGTTT-ACTGGTGTAT------CAGGTGTTGCTGTACGAGGAG 271
consensus_6857#2 ATGATAGTGGGCTTCATTGTTT-ACTGGTGTAT------CAGGTGTTGCTGTACGAGGAG 209
consensus_6857#0 GTATTCCTGGTCGANATTGCCTGACTTGCGCTTACCCTANAATCGGTCTTATCCCCGGGG 298
* * *** * **** * *** * * * * * * * * * ** *
consensus_6857#1 CAACAGTGGTGCGGTG--TTAGCGACAC-CCATTACAATAACCTCCGAAGTGCATCGCGT 328
consensus_6857#2 CAACAGTGGTGCGGTG--TTAGCGACAC-CCATTACAATAACCTCCGAAGTGCATCGCGT 266
consensus_6857#0 CNNACCCGGTATACCCCTTTGACACCAGACCGTAGCAATTAGNAGGAAGCTAGAATACGC 358
* *** ** * ** ** * **** * * * * **
consensus_6857#1 TGCACCA--CCGGGAACGACACAAACCGTACC--ACCACCATCCGGTGCTATCATTCAAG 384
consensus_6857#2 TGCACCA--CCGGGAACGACACAAACCGTACC--ACCACCATCCGGTGCTATCATTCAAG 322
consensus_6857#0 GGTAACATACCCACAAGGAGGTACACCGGATTTAGNGAACCNCCCGAAAGCTGGTTCNTG 418
* * ** ** ** ** * **** * * * ** * * *** *
consensus_6857#1 GTCATCCGAC------CGGGACGGCGGCGTATC--CGGCAATGCCGACTGCGTACCCAAC 436
consensus_6857#2 GTCATCCGAC------CGGGACGGCGGCGTATC--CGGCAATGCCGACTGCGTACCCAAC 374
consensus_6857#0 GACATATGGCTCTAGGCCAANCANCGGGAAGACGACCGAAACACCAATTATGGGTCCTGG 478
* *** * * * * *** * * * ** ** * * * **
consensus_6857#1 GTCTTCCCCGGCACCGTACCCTGCCCAGCCGTACATGCAGCACTATCCGTATCAAACGTC 496
consensus_6857#2 GTCTTCCCCGGCACCGTACCCTGCCCAGCCGTACATGCAGCACTATCCGTATCAAACGTC 434
consensus_6857#0 ANTNTGCGCTG-GTGANNCCAAAAATNATTACACTGGTGGGNACCCCTATACCAC-TATG 536
* * * * ** ** * * * ** ** *
consensus_6857#1 CGCTGCCCCAACGTCGATGCCACCACCGCAGCCGAACACTGCCGCTTCCGTCCAATTTCC 556
consensus_6857#2 CGCTGCCCCAACGTCGATGCCACCACCGCAGCCGAACACTGCCGCTTCCGTCCAATTTCC 494
consensus_6857#0 CNCGGACTCA-CGGCCATATCNCAAAGGANATANTACCCCNGGATTTNCACCTAANAGCT 595
* * * * ** ** * ** * * * * ** * ** * * ** *
consensus_6857#1 GGCCCTTCCTTCGCAGATGCAGATTCCGATACTACCATCGGCCTCGGCTCCTCCCGCTGG 616
consensus_6857#2 GGCCCTTCCTTCGCAGATGCAGATTCCGATACTACCATCGGC-TCGGCTCCTCCCGCTGG 553
consensus_6857#0 CCAAATGTACTGTGAGATNGACTTACTGGAGGTCGAATTAACGCGTACCCGCCCCGGNCC 655
* * **** * * * * * ** * * * ****
consensus_6857#1 TGCTGCCG---GACCG-GCAGCGATGATGAATCC--TCCCAGCTACGACCAAGTGGTAAA 670
consensus_6857#2 TGCTGCCG---GACCG-GCAGCGATGATGAATCC--TCCCAGCTACGACCAAGTGGTAAA 607
consensus_6857#0 TTTTGACGTTTGACCTTATGACGACCAGGGGGCAGATCCTGGGCGCGA--AAGGGACAGT 713
* ** ** **** *** * * * *** * *** *** * *
consensus_6857#1 CAACTCGTACCCAG-TGCAGGCACCTTAC-AATCCCGACTTCAAAGG-CTAAACGACGAT 727
consensus_6857#2 CAACTCGTACCCAGGTGCAGGCACCTTAC-AATCCCGACTTCAAAGG-CTAAACGACGAT 665
consensus_6857#0 CAATTCGAA---ATATGAGATTACCCCGCTAATCACCNATCCAATGTTCCTTATAACACA 770
*** *** * * ** *** * **** * * *** * * * **
consensus_6857#1 GGCCGTACGGGCCCCTGGAGAGGAGACTTAAAGTT-CAG--GA-ACAAACGGTGAACCAC 783
consensus_6857#2 TGCCGTACGGGCCCCTGNAGAGGAGACTTAAAGNTTCAG--GAGACCAACGGTGA----- 718
consensus_6857#0 AGCCACAACCGTGTTGGGTGATACACACAAAGGTCACAACTACTACCGGCTGTAACCCCC 830
*** * * * ** ** * ** ** * ** *
consensus_6857#1 AGTGAACCACACGCTGGAGGCGGTTTAGGAAAGAAAGCTTTCCTAGTGCCATCCTAGACG 843
consensus_6857#2 ------------------------------------------------------------
consensus_6857#0 AAGAGTCTGGACACCGCAAGTGACGCAACCCCTATACAACACAAAAAGAACNCCGCNGAC 890
consensus_6857#1 AGCAACTAGCGTAATTGTCGCCGTGTTA 871
consensus_6857#2 ----------------------------
consensus_6857#0 AACCTCTACTGACATAA----------- 907
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||