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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6858#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 993 fasta sequence
[CCGGAAAAAAAATGGATATCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAGAGCGAGAGCGAGAGCGAGAGCGAGAGGGAGAGAAAGAGGAAAAAATAAGAAATGTTACACAAATGTTATGTTTGCGAAAGTTTATGTTTAGTAGCGTAATATTAGTGGTAGTAGTGGAAGTGCTACTAATTGTACATAAATAACGAAAAAGGGACGAAGAAGCAAAGTGCGTAGTGTTGTAAGGTTCATACGATATCTCACCCCGAAATAATTCACACGACCACCAATTGGACGGGAAGGAAAGGAAGCAGAAGGCGAAAGAAAAACAGACCATATTGTACGCTGAAACAGAGGGAAAGCAATGGACGGAGGCACTAGCGAAGCGATACACTGTTTTCCAGGAGTTCTCATAGCTGTGCGGCACTTTATTGACTCTTTCTTCCTTGAAATGAACTCAATGTAATAGGAATTGGACTCTACAGCATCCTTGTTGGACAAATCCAATAGGAATTTTCAAGGAGCCTGTCCCAAAAAGGATGCCATAGAGTCCAATTTCCAACGTATGAAGTTCACTTCCCAAAAGAAAGAGTCAAGGAAGAGTCCCACAGCTATGAGAAAACGCTGGAAAACCCTGTAATACATAATAAACAATAGTGTCTTAAAATATAAAAACAAAGCAGAACACTATAAACAAACCTCCCTCCTCCATTTTCCCTTTCCCATTCTACACTAACCCGCGTGTTTAGGAATTGTAATATCATCCCAAAGGTTTTTTGTTTTAGTAATTGGTAGGACGTTAGCAATAGCTGTGAGACAGGTGCGTAATATGCCGGTGTAATTAGTGTGCGCTGATTAGTATGGTGTGGAGTGGCACTACTGTGGCGGAGAAAAACGATCGTGATCGCATCAGCCCATCCATCGTAGCAATCCATGACACGTTGGCAATCCCTCACCTGGGAAACGG]
[+] EMBL BM616709 [CCGGAAAAAAAATGGATATCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAGAGCGAGAGCGAGAGCGAGAGCGAGAGGGAGAGAAAGAGGAAAAAATAAGAAATGTTACACAAATGTTATGTTTGCGAAAGTTTATGTTTAGTAGCGTAATATTAGTGGTAGTAGTGGAAGTGCTACTAATTGTACATAAATAACGAAAAAGGGACGAAGAAGCAAAGTGCGTAGTGTTGTAAGGTTCATACGATATCTCACCCCGAAATAATTCACACGACCACCAATTGGACGGGAAGGAAAGGAAGCAGAAGGCGAAAGAAAAACAGACCATATTGTACGCTGAAACAGAGGGAAAGCAATGGACGGAGGCACTAGCGAAGCGATACACTGTTTTCCAGGAGTTCTCATAGCTGTGCGGCACTTTATTGACTCTTTCTTCCTTGAAATGAACTCAATGTAATAGGAATTGGACTCTACAGCATCCTTGTTGGACAAATCCAATAGGAATTTTCAAGGAGCCTGTCCCAAAAAGGATGCCATAGAGTCCAATTTCCAACGTATGAAGTTCACTTCCCAAAAGAAAGAGTCAAGGAAGAGTCCCACAGCTATGAGAAAACGCTGGAAAACCCTGTAATACATAATAAACAATAGTGTCTT ]
[+] EMBL BX628490 [ GTAGTGGAAGTGCTACTAATTGTACATAAATAACGAAAAAGGGACGAAGAAGCAAAGTGCGTAGTGTTGTAAGGTTCATACGATATCTCACCCCGAAATAATTCACACGACCACCAATTGGACGGGAAGGAAAGGAAGCAGAAGGCGAAAGAAAAACAGACCATATTGTACGCTGAAACAGAGGGAAAGCAATGGACGGAGGCACTAGCGAAGCGATACACTGTTTTCCAGGAGTTCTCATAGCTGTGCGGCACTTTATTGACTCTTTCTTCCTTGAAATGAACTCAATGTAATAGGAATTGGACTCTACAGCATCCTTGTTGGACAAATCCAATAGGAATTTTCAAGGAGCCTGTCCCAAAAAGGATGCCATAGAGTCCAATTTCCAACGTATGAAGTTCACTTCCCAAAAGAAAGAGTCAAGGAAGAGTCCCACAGCTATGAGAAAACGCTGGAAAACCCTGTAATACATAATAAACAAT ]
[+] EMBL BX610666 [ TAGCGAAGCGATACACTGTTTTCCAGGAGTTCTCATAGCTGTGCGGCACTTTATTGACTCTTTCTTCCTTGAAATGAACTCAATGTAATAGGAATTGGACTCTACAGCATCCTTGTTGGACAAATCCAATAGGAATTTTCAAGGAGCCTGTCCCAAAAAGGATGCCATAGAGTCCAATTTCCAACGTATGAAGTTCACTTCCCAAAAGAAAGAGTCAAGGAAGAGTCCCACAGCTATGAGAAAACGCTGGAAAACCCTGTAATACATAATAAACAATAGTGTCTTAAAATATAAAAACAAAGCAGAACACTATAAACAAACCTCCCTCCTCCATTTTCCCTTTCCCATTCTACACTAACCCGCGTGTTTAGGAATTGTAATATCATCCCAAAGGTTTTTTGTTTTAGTAATTGGTAGGACGTTAGCAATAGCTGTGAGACAGGTGCGTAATATGCCGGTGTAATTAGTGTGCGCTGATTAGTATGGTGTGGAGTGGCACTACTGTGGCGGAGAAAAACGATCGTGATCGCATCAGCCCATCCATCGTAGCAATCCATGACACGTTGGCAATCCCTCACCTGGGAAACGG]
[+] EMBL BX618078 [ CTCATAGCTGTGCGGCACTTTATTGACTCTTTCTTCCTTGAAATGAACTCAATGTAATAGGAATTGGACTCTACAGCATCCTTGTTGGACAAATCCAATAGGAATTTTCAAGGAGCCGGTCCCAAAAAGGAAGCCATAGAGTCCAATTTCCAACGTATGAAGTTCACTTCCCAAAAGAAAGAGTCAAGGAAGAGGCCCACAGCTATGAGAAAACGCGGGAAAACCC ]
[+] EMBL BX610667 [ TAGGAATTTTCAAGGAGCCGGTCCCAAAAAGGAGGCCATAGAGTCCAATCCCCAACGTATGAAGTTCACTTCCCAAAAGAAAGAGTCAAGGAAGAGTCCCACAGCTATGAGAAAACGCTGGAAAACCCGGGAATACA ]
consensusID : consensus_6858#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 745 fasta sequence
[GCTGCTTATCTCATACAACGACACAAACATAACAGAAAAAAAACTTAACAATGTTTAAAAAGAAACATTGCGAAAGTTACCAAAATTTACATCGCTCGCAAATCCAGCTACTATTAAAATTTAACACCGCTATTTCTCTTTCTCTCTTTCCCCTCCCTCTGCCCGTTATCCGTCCAATGGTCCGCGTTTCTCTTTCTAGCAATGCCCATGGGCCAGATGCCGGTGTTGGAGGTCGATGGTAAGCGTGTGCACCAATCTCTGGCAATGTGCCGGTATGTGGCCAAGCAGATCAATCTGGCCGGTGATAATCCGTTAGAGGCTCTGCAAATCGATGCCATTGTCGATACGATCAATGATTTTCGTCTAAAAATTGCGATTGTCGCCTACGAACCGGACGATATGGTGAAGGAGAAAAAAATGGTCACCCTGAACAACGAGGTGATTCCGTTTTATCTGACTAAGCTGAACGTGATCGCCAAGGAGAACAATGGCCACCTGGTGCTTGGCAATCCGACCTGGGCTGATGTTTATTTTGCTGGTATCCTAGACTATCTAAACTACCTGACCAAGACAAATCTGCTCGAGAACTTCCCGAACTTGCAGGAGGTGGTCCAGAAGGTGCTAGATAATGAGAATGTCAAAGCTTACATTGCTAAGAGACCCATCACCGAAGTTTAGACGGATGGTGTGATTTGCCGAGAAGAGCAACTTTTAAAATGCAATCACCTTGAATATGATTCTTTTT]
[+] EMBL BX615317 [GCTGCTTATCTCATACAACGACACAAACATAACAGAAAAAAAACTTAACAATGTTTAAAAAGAAACATTGCGAAAGTTACCAAAATTTACATCGCTCGCAAATCCAGCTACTATTAAAATTTAACACCGCTATTTCTCTTTCTCTCTTTCCCCTCCCTCTGCCCGTTATCCGTCCAATGGTCCGCGTTTCTCTTTCTAGCAATGCCCATGGGCCAGATGCCGGTGTTGGAGGTCGATGGTAAGCGTGTGCACCAATCTCTGGCAATGTGCCGGTATGTGGCCAAGCAGATCAATCTGGCCGGTGATAATCCGTTAGAGGCTCTGCAAATCGATGCCATTGTCGATACGATCAATGATTTTCGTCTAAAAATTGCGATTGTCGCCTACGAACCGGACGATATGGTGAAGGAGAAAAAAATGGTCACCCTGAACAACGAGGTGATTCCGTTTTATCTGACTAAGCTGAACGTGATCGCCAAGGAGAACAATGGCCACCTGGTGCTTGGCAATCCGACCTGGGCTGATGTTTATTTTGCTGGTATCCTAGACTATCTAAACTACCTGACCAAGACAAATCTGCTCGAGAACTTCCCGAACTTGCAGGAGGTGGTCCAGAAGGTGCTAGATAATGAGAATGTCAAAGCTTACATTGCTAAGAGACCCATCACCGAAGTTTAGACGGATGGTGTGATTTGCCGAGAAGAGCAACTTTTAAAATGCAATCACCTTGAATATGATTCTTTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6858#0 CCGGAAAAAAAATGGATATCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA 60
consensus_6858#1 ------------------------------------------------------------
consensus_6858#0 GAGAGAGAGAGAGAGAGAGAGAGAGCGAGAGCGAGAGCGAGAGCGAGAGCGAGAGGGAGA 120
consensus_6858#1 ------------------------------------------------------------
consensus_6858#0 GAAAGAGGAAAAAATAAGAAATGTTACACAAATGTTATGTTTGCGAAAGTTTATGTTTAG 180
consensus_6858#1 ------------------------------------------------------------
consensus_6858#0 TAGCGTAATATTAGTGGTAGTAGTGGAAGTGCTACTAATTGTACATAAATAACGAAAAAG 240
consensus_6858#1 ------------------------------GCTGCTTATCTCATACAA-CGACACAAACA 29
*** ** ** * * ** ** ***
consensus_6858#0 GGACGAAGAAGCAAAGTGCGTAGTGTTGTAAGGTTCATACGATATCTCACCCCGAAATAA 300
consensus_6858#1 TAACAGAAAAA-AAACTTAACAATGTTTAAAAAGAAACATTGCGAAAGTTACCAAAAT-- 86
** * ** *** * * **** ** * * ** ****
consensus_6858#0 TTCACACGACCACCAATTGGACGGGAAGGAAAGGAAGCAGAAGGCGAAAGAAAAACAGAC 360
consensus_6858#1 -TTACATCGCTCGCAAAT---CCAGCTACTATTAAAATTTAACACCGCTATTTCTCTTTC 142
* *** * *** * * * * ** ** * * *
consensus_6858#0 CATATTGTACGCTGAAACAGAGGGAAAGCAATGGACGGAGGCACTAGCGAAGCGATACAC 420
consensus_6858#1 TCTCTT-TCCCCTCCCTCTGCCCGTTATC--CGTCCAATGGTCCGCGTTTCTCTTTCTAG 199
* ** * * ** * * * * * * * ** * * * * *
consensus_6858#0 TGTTTTCCAGGAGTTCTCATAGCTGTGCGGCACTTTATTGACTCTTTCTTCCTTGAAATG 480
consensus_6858#1 CAATGCCCATGGGC-CAGATGCCGGTGTTGGAGGTCGATGGTAAGCGTGTGCACCAATCT 258
* *** * * * ** * *** * * * ** * * **
consensus_6858#0 AACTCAATGTAATAGGAATTGGACTCTACAGCATCCTTGTTGGACAAATCCAATAGGAAT 540
consensus_6858#1 CTGGCAATGTGCCGGTATGTGGCCA----AGCA-----GATCAATCTGGCCGGTGATAAT 309
****** * * *** * **** * * * ** * ***
consensus_6858#0 TTTCAAGGAGCCTGTCCCAAAAAGGATGCCATAGAGTCCAATTTCCAACGTATGAAGTTC 600
consensus_6858#1 CCGTTAGAGGC---TCTGCAAATCGATGCCATTG---TCGATA--CGATCAATGATTTTC 361
** ** ** *** ******** * * ** * * **** ***
consensus_6858#0 ACTTCCCAAAAGAAAGAGTCAAGGAAGAGTCCCACAGCTATGAGAAAACGCTGGAAAACC 660
consensus_6858#1 GTCTAAAAATTGCGATTGTCGCCTACGAACCGGACGATATGGTGAAGGAGAAAAAAATGG 421
* ** * * *** * ** * ** * *** * ***
consensus_6858#0 CTGTAATACATAATAAA-CAATAGTGTCTTAAAATATAAAAACAAAGCAGAACACTATAA 719
consensus_6858#1 TCACCCTGAACAACGAGGTGATTCCGTTTTATCTGACTAAGCTGAACGTGATCGCCAAGG 481
* * ** * ** ** *** * ** ** ** * * *
consensus_6858#0 ACAAACCTCCCTCCTCCATTTTCCCTTTCCCATTCTACACTAACCCGCGTGTTTAGGAAT 779
consensus_6858#1 AGAACAATGGCCACCTGGTGCTTGGCAATCCGACCTGGGCTGATGTTTATTTTGCTGGTA 541
* ** * * * * * ** ** ** * * ** *
consensus_6858#0 TGTAATATCATCCCAAAGGTTTTTTGTTTTAGTAATTGGTAGGACGTTAGCAATAGCTGT 839
consensus_6858#1 TCCTAGACTATCTAAACTACCTGACCAAGACAAATCTGCTCGAGAACTTCCCGAACTTGC 601
* * * *** ** * * ** * * * * * **
consensus_6858#0 GAGACA-GGTGCGTAATATGCCGGTGTAATTAGTGTGCGCTGATTAGTATGGTGTGGAGT 898
consensus_6858#1 AGGAGGTGGTCCAGAAGGTGCTAG-ATAATGAGAATGTCAAAGCTTACATTGCTAAGAGA 660
** *** * ** *** * **** ** ** * ** * ***
consensus_6858#0 GGCACTACTGTGGCGGAGAAAAACGATCGTGATCGCATCAGCCCATCCATCGTAGCAATC 958
consensus_6858#1 CCCATCACCGAAGTTTAGACGGATGGT-GTGATTTGCCGAGAAGAGCAACTTTTAAAATG 719
** ** * * *** * * * ***** ** * * * * ***
consensus_6858#0 CATGACACGTTGGCAATCCCTCACCTGGGAAACGG 993
consensus_6858#1 CA-ATCACCTTGAATATGATTCTTTTT-------- 745
** *** *** ** ** *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||