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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6862#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 857 fasta sequence
[CAGAAAACGACCTTTTTTGCTTTTCGGTGTCTCTGAAATCAAGAAGCAAACAGCGATCAAAGAGTTTTCACAAAATAACCAAACGAAAAATGCATAAGAGCAAAACACAACTAATTACAATTGCTTGAATCTAATCTGAAAGCGTACGAGCAAATGAAAAAGACGAAACATGTAGCCGAAATATGATTGCAAAACCGTTAAAAACATGTTTGTGCGCTTTTAAAGAGGCGTCTAAGTCTAAAAATCCTAAGTGAAACATAAATAGTACGGAACACGCGCGCGCGCGAATACAATTTAATGATTTGCTTGCGTGCCTAAGAATGGAACGATGTTGTTATAGTTCCATAGAAAAAAAAACACGCAACTGCAACGGGGAAACCGTGATAACACATGATCGGGAAAGTAATAGAAGCAATTCTCTCACACAAAGTAAGTTGCATCTTATTGATTGATCTCAATTGGTTTAGACAAGAAAGGAGGGGGGAGGGAAAGCAAAGGATAACG-AAAACACATTAAGTCTGACTGCATTTCTCGATCGTTCCCTGAGAAAACATGTGATAATTTGTGCAAGGAAAAATGGGAATACTGTTGAATTTAGAATTCTACTCCCGTTCGAAAGACGCCCACAGTAAATTGAGATGATAAAGTCTATACCAAAAGTACCTTCCCCCTCGCTCAAGATTCATTGGTCGGTGGTGACCTGCCTACCCCCAACCGATCACCATTCATCAAAGCATATGCTGCAGCAAACATCAAGTAGCAAACAACAACCATGATCAATTTCACTGATCATGGTTTTATAAAAGAGAAAGCATCGAAATTGTTAAACAGGGAANAGTTCCACGTTGTATTAGCAG]
[+] EMBL BX621454 [CAGAAAACGACCTTTTTTGCTTTTCGGTGTCTCTGAAATCAAGAAGCAAACAGCGATCAAAGAGTTTTCACAAAATAACCAAACGAAAAATGCATAAGAGCAAAACACAACTAATTACAATTGCTTGAATCTAATCTGAAAGCGTACGAGCAAATGAAAAAGACGAAACATGTAGCCGAAATATGATTGCAAAACCGTTAAAAACATGTTTGTGCGCTTTTAAAGAGGCGTCTAAGTCTAAAAATCCTAAGTGAAACATAAATAGTACGGAACACGCGCGCGCGCGAATACAATTTAATGATTTGCTTGCGTGCCTAAGAATGGAACGATGTTGTTATAGTTCCATAGAAAAAAAAACACGCAACTGCAACGGGGAAACCGTGATAACACATGATCGGGAAAGTAATAGAAGCAATTCTCTCACACAAAGTAAGTTGCATCTTATTGATTGATCTCAATTGGTTTAGACAAGAAAGGAGGGGGGAGGGAAAGCAAAGGATAACG AAAACACATTAAGTCTGACTGCATTTCTCGATCGTTCCCTGAGAAAACATGTGATAATTTGTGCAAGGAAAAATGGGAATACTGTTGAATTTAGAATTCTACTCCCGTTCGAAAGACGCCCACAGTAAATTGAGATGATAAAGTCTATACCAAAAGTACCTTCCCCCTCGCTCAAGATTCATTGGTCGGTGGTGACCTGCCTACCCCCAACCGATCACCATTCATCAAAGCATATGCTGCAGCAAACATCAAGTAGCAAACAACAACCATGATCAATTTCA ]
[+] EMBL BX622984 [ AAATCAAGAAGCAAACAGCGATCAAAGAGTTTTCACAAAATAACCAAACGAAAAATGCATAAGAGCAAAACACAACTAATTACAATTGCTTGAATCTAATCTGAAAGCGTACGAGCAAATGAAAAAGACGAAACATGTAGCCGAAATATGATTGCAAAACCGTTAAAAACATGTTTGTGCGCTTTTAAAGAGGCGTCTAAGTCTAAAAATCCTAAGTGAAACATAAATAGTACGGAACACGCGCGCGCGCGAATACAATTTAATGATTTGCTTGCGTGCCTAAGAATGGAACGATGTTGTTATAGTTCCATAGAAAAAAAAACACGCAACTGCAACGGGGAAACCGTGATAACACATGATCGGGAAAGTAATAGAAGCAATTCTCTCACACAAAGTAAGTTGCATCTTATTGATTGATCTCAATTGGTTTAGACAAGAAAGGAGGGGGGAGGGAAAGCAAAGGATAACG AAAACACATTAAGTCTGACTGCATTTCTCGATCGTTCCCTGAGAAAACATGTGATAATTTGTGCAAGGAAAAATGGGAATACTGTTGAATTTAGAATTCTACTCCCGTTCGAAAGACGCCCACAGTAAATTGAGATGATAAAGTCTATACCAAAAGTACCTTCCCCCTCGCTCAAGATTCATTGGTCGGTGGTGACCTGCCTACCCCCAACCGATCACCATTCATCAAAGCATATGCTGCAGCAAACATCAAGTAGCAAACAACAACCATGATCAATTTCACTGATCATGGTTTTATAAAAGAGAAAGCATCGAAATTGTTAAACAGGGAANAGTTCCACGTTGTATTAGCAG]
[+] EMBL BX624003 [ TATGATTGCAAACCCGTTAAAAACATGTTTGTGCGCTTTTAAAGAGGCGTCTAAGTCTAAAAATCCTAAGTGAAACATAAATAGTACGGAACACGCGCGCGCGCGAATACAATTTAATGATTTGCTTGCGTGCCTAAGAATGGAACGATGTTGTTATAGTTCCATAGAAAAAAAAACACGCAACTGCAACGGGGAAAACGTGATAAAACGTGATCGGGAAAGTAATAGAAGCAATTCTCTCACACAAAGTAAGTTGCATCTTATTGATTGATCTCAATTGGTTTAGACAAGAAAGGA GGGGGAGGGAAAGCAAAGGATAACGAAAAACACATTAAGTCTGACTGCATTTCTCGATCGTTCCCTGAGAAAACATGTGATAATTTGTGTAAGAAAAAATGGGAATACTGTTGAATTTAGAATTCTACTCCCGTTCGAAAGATGCCCACAGTAAATTGAGATGATAAAGTCTATACCAAAAGTACCTTCCCCCTCGCTCAAGATTCATTGGTCGGTGGTGACCTGCCTACCCCCAACCGATCACCA ]
[+] EMBL BM631447 [ ccgTAAATAGTACGGAACACGCGCGCGCGCGAATACAATTTAATGATTTGCTTGCGTGCCTAAGAATGGAACGATGTTGTTATAGTTCCATAGAAAAAAAAACACGCAACTGCAACGGGGAAACCGTGATAACACATGATCGGGAAAGTAATAGAAGCAATTCTCTCACACAAAGTAAGTTGCATCTTATTGATTGATCTCAATTGGTTTAGACAAGAAAGGAGGGGGGAGGGAAAGCAAAGGATAACG AAAACACATTAAGTCTGACTGCATTTCTCGATCGTTCCCTGAGAAAACATGTGATAATTTGTGCAAGGAAAAATGGGAATACTGTTGAATTTAGAATTCTACTCCCGTTCGAAAGACGCCCACAGTAAATTGAGATGATAAAGTCTATACCAAAAGTACCTTCCCCCTCGCTCAAGATTCATTGGTCGGTGGTGACCTGCCTACCCCCAACCGATCACCATTCATCAAAGCATATGCTGCAGCAAA ]
consensusID : consensus_6862#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence
[CCGCCCACGCGTCCGATTGATCTCAATTGGTTTAGACAAGAAAGGAGGGGGGAGGGAAAGCAAAGGATAACGAAAACACATTAAGTCTGACTGCATTTCTCGATCGTTCCCTGAGAAAACATGTGATAATATGTGCAAGAAAAAATGGGAATACTGTTGAATTTAGAATTCTACTCCCGTTCGAAACACGCCCACAGTAAATTGAGATGATAAAGTCTATACCAAAAGTACCTTCCCCCTCGCTCAAGATTCATTGGTCGGTGGTGACCTACCTACCCCCCAAACGATCACCATTCATCCAAGCAAATGCTGCAGCAAACATCAAGTAGCAAACATCAACCATGATCAATTTCACGATAATGGTTTTATAAAAGCGAAAGCATCGAAATTGTTAAAACAGGGAAGAGTTACAACGTTGTATTAGCAGCAGGGGAAACCTGAATGAAACTCTGCTATACACACACACACACACACACATCAATATTGTAATCAATTTCAGACAAACTCTCTGAGAGAAGAAAAATGCTCTGTGTTTTATAGCGCCCAAGGGTTACAAGATGATGCACCTTTGGCGCAAAAACACACTCTACGCACCAGCGCATGCCCCAGCAGCACACACGGTGTGTCGTGTGTCGGCCAAAGGTGGCGCATGCTGATGCAGTTG]
[+] EMBL BM632946 [CCGCCCACGCGTCCGATTGATCTCAATTGGTTTAGACAAGAAAGGAGGGGGGAGGGAAAGCAAAGGATAACGAAAACACATTAAGTCTGACTGCATTTCTCGATCGTTCCCTGAGAAAACATGTGATAATATGTGCAAGAAAAAATGGGAATACTGTTGAATTTAGAATTCTACTCCCGTTCGAAACACGCCCACAGTAAATTGAGATGATAAAGTCTATACCAAAAGTACCTTCCCCCTCGCTCAAGATTCATTGGTCGGTGGTGACCTACCTACCCCCCAAACGATCACCATTCATCCAAGCAAATGCTGCAGCAAACATCAAGTAGCAAACATCAACCATGATCAATTTCACGATAATGGTTTTATAAAAGCGAAAGCATCGAAATTGTTAAAACAGGGAAGAGTTACAACGTTGTATTAGCAGCAGGGGAAACCTGAATGAAACTCTGCTATACACACACACACACACACACATCAATATTGTAATCAATTTCAGACAAACTCTCTGAGAGAAGAAAAATGCTCTGTGTTTTATAGCGCCCAAGGGTTACAAGATGATGCACCTTTGGCGCAAAAACACACTCTACGCACCAGCGCATGCCCCAGCAGCACACACGGTGTGTCGTGTGTCGGCCAAAGGTGGCGCATGCTGATGCAGTTG]
consensusID : consensus_6862#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 540 fasta sequence
[CCGCGCTGGAACCGACGATACTGATGGGCCGCCCGGCGGCACCGCGGCTGACGGCGGGGGTATTAGTAGTAGTAGCAGTAGTAGTGGTGGTGCGATCGCTTCTGCCAGTATTCCTTCGCCGCTTCCTGCTGCCCGCAGCGGGGCAAAGGACTGTTGTGCCGCCGGTGGCAGCAGCAGCGAGACAACACGTGATAAACCCAGTATGGCCAACGTACTGTTGCCGTCCATCGATAACAGCAGCTGCTGCTAGAGCGTTTGTGCGCGTTGTATGGATCAGATCTTTCCGGGAGTGCACGTGAAGGGTTAAAGGAAGGGAATACGCAGATCAGGCCATGGAAGATTCAGACAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTAAGAGAGCGAAAGAGAGACACACACGATGGTTTGTACATAGTAAAAAAATGAATTCAAATGGCAGCAAAGGATGCGCGACGCGACGGGAAACTGCGAGACAAACAATACAACAACAACAACAACACTATTTCGTAAGCGCAAACGAGGAAACGCCAAAGG]
[+] EMBL BM603763 [CCGCGCTGGAACCGACGATACTGATGGGCCGCCCGGCGGCACCGCGGCTGACGGCGGGGGTATTAGTAGTAGTAGCAGTAGTAGTGGTGGTGCGATCGCTTCTGCCAGTATTCCTTCGCCGCTTCCTGCTGCCCGCAGCGGGGCAAAGGACTGTTGTGCCGCCGGTGGCAGCAGCAGCGAGACAACACGTGATAAACCCAGTATGGCCAACGTACTGTTGCCGTCCATCGATAACAGCAGCTGCTGCTAGAGCGTTTGTGCGCGTTGTATGGATCAGATCTTTCCGGGAGTGCACGTGAAGGGTTAAAGGAAGGGAATACGCAGATCAGGCCATGGAAGATTCAGACAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTAAGAGAGCGAAAGAGAGACACACACGATGGTTTGTACATAGTAAAAAAATGAATTCAAATGGCAGCAAAGGATGCGCGACGCGACGGGAAACTGCGAGACAAACAATACAACAACAACAACAACACTATTTCGTAAGCGCAAACGAGGAAACGCCAAAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6862#0 CAGAAAACGACCTTTTTTGCTTTTCGGTGTCTCTGAAATCAAGAAGCAAACAGCGATCAA 60
consensus_6862#1 ------------------------------------------------------------
consensus_6862#2 ------------------------------------------------------------
consensus_6862#0 AGAGTTTTCACAAAATAACCAAACGAAAAATGCATAAGAGCAAAACACAACTAATTACAA 120
consensus_6862#1 ------------------------------------------------------------
consensus_6862#2 ------------------------------------------------------------
consensus_6862#0 TTGCTTGAATCTAATCTGAAAGCGTACGAGCAAATGAAAAAGACGAAACATGTAGCCGAA 180
consensus_6862#1 ------------------------------------------------------------
consensus_6862#2 ------------------------------------------------------------
consensus_6862#0 ATATGATTGCAAAACCGTTAAAAACATGTTTGTGCGCTTTTAAAGAGGCGTCTAAGTCTA 240
consensus_6862#1 ------------------------------------------------------------
consensus_6862#2 ------------------------------------------------------------
consensus_6862#0 AAAATCCTAAGTGAAACATAAATAGTACGGAACACGCGCGCGCGCGAATACAATTTAATG 300
consensus_6862#1 ------------------------------------------------------------
consensus_6862#2 ------------------------------------------------------------
consensus_6862#0 ATTTGCTTGCGTGCCTAAGAATGGAACGATGTTGTTATAGTTCCATAGAAAAAAAAACAC 360
consensus_6862#1 ------------------------------------------------------------
consensus_6862#2 ------------------------------------------------------------
consensus_6862#0 GCAACTGCAACGGGGAAACCGTGATAACACATGATCGGGAAAGTAATAGAAGCAATTCTC 420
consensus_6862#1 ------------------------------------------------------------
consensus_6862#2 ------------------------------------------------------------
consensus_6862#0 TCACACAAAGTAAGTTGCATCTTATTGATTGATCTCAATTGGTTTAGACAAGAAAGGAGG 480
consensus_6862#1 ------------CCGCCCACGCGTCCGATTGATCTCAATTGGTTTAGACAAGAAAGGAGG 48
consensus_6862#2 ----CCGCGCTGGAACCGACGATACTGATGGGCCGC--CCGGCGGCACCGCGGCTGACGG 54
* *** * * * ** * * * **
consensus_6862#0 GGGGAGGGAAAGCAAAGGATAACGAAAACACATTAAGTCTGACTGCATTTCTCGATCGTT 540
consensus_6862#1 GGGGAGGGAAAGCAAAGGATAACGAAAACACATTAAGTCTGACTGCATTTCTCGATCGTT 108
consensus_6862#2 CGGGGGTATTAGTAGTAG-TAGCAGTAGTAGTGGTGGTGCGATCGCTTCTGCCAGTATTC 113
*** * ** * * ** * * * ** ** ** * * * * *
consensus_6862#0 CCCTGAGAAAACATGTGATAATTTGTGCAAGGAAAAATGGGAATACTGTTGAATTTAG-A 599
consensus_6862#1 CCCTGAGAAAACATGTGATAATATGTGCAAGAAAAAATGGGAATACTGTTGAATTTAG-A 167
consensus_6862#2 CTTCGCCGCTTCCTGCTGCCCGCAGCGGGGCAAAGGACTGTTGTGCCGCCGGTGGCAGCA 173
* * * ** * * ** * * * * * * ** *
consensus_6862#0 ATTCTACTCCCGTTCGAAAGACGCCCACAGTAAATTGAGATGATAAAGTC-TATACCAAA 658
consensus_6862#1 ATTCTACTCCCGTTCGAAACACGCCCACAGTAAATTGAGATGATAAAGTC-TATACCAAA 226
consensus_6862#2 GCAGCGAGACAACACGTGATAAACCCAGTATGG-CCAACGTACTGTTGCCGTCCATCGAT 232
* ** * * **** * * * * * * * * * *
consensus_6862#0 AGTACCTTCCCCCTCGCTCAAGATTCATTGGTCGGTGGTGACCTGCCTACCCCC-AACCG 717
consensus_6862#1 AGTACCTTCCCCCTCGCTCAAGATTCATTGGTCGGTGGTGACCTACCTACCCCCCAAACG 286
consensus_6862#2 AACAGCAGCTGCTGCTAGAGCGTTTGTGCGCGTTGTATGGATCAGATCTTTCCGGGAGTG 292
* * * * * * * ** * ** ** * ** * *
consensus_6862#0 ATCACCATTCATCAAAGCATATGCTGCAGCAAACATCAAGTAGCAAACAACAACCATGAT 777
consensus_6862#1 ATCACCATTCATCCAAGCAAATGCTGCAGCAAACATCAAGTAGCAAACATCAACCATGAT 346
consensus_6862#2 CACGTGAAGGGTTAAAGGAAGGG--AATACGCAGATCAGGCCATGGAAGATTCAGACAAA 350
* * * *** * * * * **** * * * *
consensus_6862#0 CAATTTCACTGATCATGGTTTTATAAAAGAGAAAGCATCGAAATTGTTAAA-CAGGGAAN 836
consensus_6862#1 CAATTTCAC-GATAATGGTTTTATAAAAGCGAAAGCATCGAAATTGTTAAAACAGGGAAG 405
consensus_6862#2 GAGAGAGAGAGAGAGAGAGAGAGAGAGAGTAAGAG-AGCGAAAGAGAGACA-CACACGAT 408
* * ** * * ** * ** * ***** * * * ** *
consensus_6862#0 AGTTCCA-CGTTGTATTAGCAG-------------------------------------- 857
consensus_6862#1 AGTTACAACGTTGTATTAGCAGCAGGGGAAACCTGAATGAAACTCTGCTATACACACACA 465
consensus_6862#2 GGTTTGTACATAGTAA-AAAAATGAATTCAAATGGCAGCAAAGGATGCGCGACGCGACGG 467
*** * * *** * *
consensus_6862#0 ------------------------------------------------------------
consensus_6862#1 CACACACACACATCAATATTGTAATCAATTTCAGACAAACTCTCTGAGAGAAGAAAAATG 525
consensus_6862#2 GAAACTGCGAGACAAACAATACAA-CAACAACAACAACACTATTTCGTAAGCGCAAACGA 526
consensus_6862#0 ------------------------------------------------------------
consensus_6862#1 CTCTGTGTTTTATAGCGCCCAAGGGTTACAAGATGATGCACCTTTGGCGCAAAAACACAC 585
consensus_6862#2 GGAAACGCCAAAGG---------------------------------------------- 540
consensus_6862#0 ------------------------------------------------------------
consensus_6862#1 TCTACGCACCAGCGCATGCCCCAGCAGCACACACGGTGTGTCGTGTGTCGGCCAAAGGTG 645
consensus_6862#2 ------------------------------------------------------------
consensus_6862#0 -------------------
consensus_6862#1 GCGCATGCTGATGCAGTTG 664
consensus_6862#2 -------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||