cluster # 6873

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Anopheles gambiae
cluster # 6873 cluster # 6873 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6873#0 length = 996 sequences # 4

consensus_6873#1 length = 536 sequences # 1
consensus_6873#2 length = 448 sequences # 1

consensusID : consensus_6873#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 996
fasta sequence

                              [AATCCCCGAGGTTAGAAGAACAGACGGTCGATCAGATCTCGGCAATTGGGCGAACTTTATGCGGCTGTACCAGTCCGTGGTGGACTGGTCGATCAAGATACGGGCGCTGCTGGAGCGCAAGCTGCAGCTGAACACGCTGCACGAGGCACAGCAAGCCTGCCAGAATTATTCGGGCGCAGTTGCCAGTCTTGCGGACGTGTCACAGAATTTGAGCGAAATGAATCACGAGT--TCGATAAAATTAACGAAGTTTGCTCGACGGCCTACCTGAGAGGCAAACTACACGAGGCGGAAACGCTGAAAATCGACATCGAGACAGTGCTGTTTGAAAGGAATCTGTTCCTGCACGAAACGACCGAAGAGTGGCAGCAGTACGAGCGGAAGATCGAGAGCGTACGGGAGTGGATAAAGGACGCCTATCAGGCCTTGAATTCTGGCGAGCTGAAGAGCAAACCGTTGCGCGATCAGCTCCGCATACTGGAGCAGATGCTGGCGGACATCTCCGCCCAGAAGATCAAGGTCAACATGTCGCTGGAGAAGCTGCAGGTCCACTTCCATTCCGACATCATCTACACGGACAACCCGACGATCGTGCAGAGCGGCCGGACCATACTGGCCGACCTGGACAAGCTGAACCTGGACGTGTTCCAGACGACGCAGAACCTCGACCAGGCGCTAGCCCAGATCGAGGGCTGCCAGGCGGAGATGCAGACCATCCGGCAGCGGATCGTGCACGAGGAGCAGCAGCTCCGGAATATCTTATCACCATTGCACCAGACGGGCGATAGTGAAAAGCACGAACAGGAATGTCGCGAACGAATTCGAGGATTGCAATCCCAGATGAATCAGTTGAATGATAAGATAAAGCTGTTGCTGCGCCGC-GGCGCTCCGGATCCGTAGCCGTCGGTACATTTAAGCTATCGATTTCCGGAGCGATCTGCGTCTGCTGGTAGCATCTCTGGATAGGTTTGGCATTCTTGAGCCTGGAAAGAGCGCGC]

[+] EMBL AL695532             [AATCCCCGAGGTTAGAAGAACAGACGGTCGATCAGATCTCGGCAATTGGGCGAACTTTATGCGGCTGTACCAGTCCGTGGTGGACTGGTCGATCAAGATACGGGCGCTGCTGGAGCGCAAGCTGCAGCTGAACACGCTGCACGAGGCACAGCAAGCCTGCCAGAATTATTCGGGCGCAGTTGCCAGTCTTGCGGACGTGTCACAGAATTTGAGCGAAATGAATCACGAGT  TCGATAAAATTAACGAAGTTTGCTCGACGG CTACCTGAGAGGCAAACTACACGAGGCGGAAACGCTGAAAATCGACATCGAGACAGTGCTGTTTGAAAGGAATCTGTTCCTGCACGAAACGACCGAAGAGTGGCAGCAGTACGAGCGGAAGATCGAGAGCGTATGGGAGTGGATAAAGGACGCCTATCTGGCCTTGAATTCTGGCGAGCTGAAGAGCAAACCGTTGCGCGATCAGCTCCGCATACTGGAGCAGATGCTGGCGGACATCTCCGCCCAGAAGATCAAGGTCAACATGTCGCTGGAGAAGCTGCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BM652868             [                                                                                                                                                                                                                          ccgccCACGCGTCCGCGATAAAATTAACGAAGTTTGCTCGACGGCCTACCTGAGAGGCAAACTACACGAGGCGGAAACGCTGAAAATCGACATCGAGACAGTGCTGTTTGAAAGGAATCTGTTCCTGCACGAAACGACCGAAGAGTGGCAGCAGTACGAGCGGAAGATCGAGAGCGTACGGGAGTGGATAAAGGACGCCTATCAGGCCTTGAATTCTGGCGAGCTGAAGAGCAAACCGTTGCGCGATCAGCTCCGCATACTGGAGCAGATGCTGGCGGACATCTCCGCCCAGAAGATCAAGGTCAACATGTCGCTGGAGAAGCTGCAGGTCCACTTCCATTCCGACATCATCTACACGGACAACCCGACGATCGTGCAGAGCGGCCGGACCATACTGGCCGACCTGGACAAGCTGAACCTGGACGTGTTCCAGACGACGCAGAACCTCGACCAGGCGCTAGCCCAGATCGAGGGCTGCCAGGCGGAGATGCAGACCATCCGGCAGCGGATCGTGCACGAGGAGCAGCAGCTCCGGAATATCTTATCACCATTGCACCAGACGGGCGATAGTGAAAAGCACGAACAGGAATGTCGCGAACGAATTCGAGGATTGCAATCCCAGATGAATCAGTTGAATGATAAGATAAAGCTGTTGCTGCGCCGCGGGCGCTCCGGATCCGTAGCCGTCGGTACATTTAAGCTATCGATTTC                                                                      ]
[+] EMBL BX612027             [                                                                                                                                                                                                                                                                CGACGGCCTACCTGAGAGGCAAACTACACGAGGCGGAAACGCTGAAAATCGACATCGAGACAGTGCTGTTTGAAAGGAATCTGTTCCTGCACGAAACGACCGAAGAGTGGCAGCAGTACGAGCGGAAGATCGAGAGCGTACGGGAGTGGATAAAGGACGCCTATCAGGCCTTGAATTCTGGCGAGCTGAAGAGCAAACCGTTGCGCGATCAGCTCCGCATACTGGAGCAGATGCTGGCGGACATCTCCGCCCAGAAGATCAAGGTCAACATGTCGCTGGAGAAGCTGCAGGTCCACTTCCATTCCGACATCATCTACACGGACAACCCGACGATCGTGCAGAGCGGCCGGACCATACTGGCCGACCTGGACAAGCTGAACCTGGACGTGTTCCAGACGACGCAGAACCTCGACCAGGCGCTAGCCCAGATCGAGGGCTGCCAGGCGGAGATGCAGACCATCCGGCAGCGGATCGTGCACGAGGAGCAGCAGCTCCTGAATATCTTATCACCATTGCACCAGACGGGCGATAGTGAAAAGCACGAACAGGAATGTCGCGAACGAATTCGAGGATTGCAATCCCAGATGAATCAGTTGAATGATAAGATAAAGCTGTTGCTGCGCCGC GGCGCTCCGGATCCGTAGCCGTCGGTACATTTAAGCTATCGATTTCCGGAGCGATCTGCGTCTGCTGGTAGCATCTCTGGATAGGTTTGGCATTCTTGAGCCTGGAAAGAG     ]
[+] EMBL BX611225             [                                                                                                                                                                                                                                                                                                                                                                                                         GTACGGGAGTGGATAAAGGACGCCTATCAGGCCTTGAATTCTGGCGAGCTGAAGAGCAAACCGTTGCGCGATCAGCTCCGCATACTGGAGCAGATGCTGGCGGACATCTCCGCCCAGAAGATCAAGGTCAACATGTCGCTGGAGAAGCTGCAGGTCCACTTCCATTCCGACATCATCTACACGGACAACCCGACGATCGTGCAGAGCGGCCGGACCATACTGGCCGACCTGGACAAGCTGAACCTGGACGTGTTCCAGACGACGCAGAACCTCGACCAGGCGCTAGCCCAGATCGAGGGCTGCCAGGCGGAGATGCAGACCATCCGGCAGCGGATCGTGCACGAGGAGCAGCAGCTCCGGAATATCTTATCACCATTGCACCAGACGGGCGATAGTGAAAAGCACGAACAGGAATGTCGCGAACGAATTCGAGGATTGCAATCCCAGATGAATCAGTTGAATGATAAGATAAAGCTGTTGCTGCGCCGC GGCGCTCCGGATCCGTAGCCGTCGGTACATTTAAGCTATCGATTTCCGGAGCGATCTGCGTCTGCTGGTAGCATCTCTGGATAGGTTTGGCATTCTTGAGCCTGGAAAGAGCGCGC]




>consensus_6873#0
AATCCCCGAGGTTAGAAGAACAGACGGTCGATCAGATCTCGGCAATTGGGCGAACTTTAT
GCGGCTGTACCAGTCCGTGGTGGACTGGTCGATCAAGATACGGGCGCTGCTGGAGCGCAA
GCTGCAGCTGAACACGCTGCACGAGGCACAGCAAGCCTGCCAGAATTATTCGGGCGCAGT
TGCCAGTCTTGCGGACGTGTCACAGAATTTGAGCGAAATGAATCACGAGTTCGATAAAAT
TAACGAAGTTTGCTCGACGGCCTACCTGAGAGGCAAACTACACGAGGCGGAAACGCTGAA
AATCGACATCGAGACAGTGCTGTTTGAAAGGAATCTGTTCCTGCACGAAACGACCGAAGA
GTGGCAGCAGTACGAGCGGAAGATCGAGAGCGTACGGGAGTGGATAAAGGACGCCTATCA
GGCCTTGAATTCTGGCGAGCTGAAGAGCAAACCGTTGCGCGATCAGCTCCGCATACTGGA
GCAGATGCTGGCGGACATCTCCGCCCAGAAGATCAAGGTCAACATGTCGCTGGAGAAGCT
GCAGGTCCACTTCCATTCCGACATCATCTACACGGACAACCCGACGATCGTGCAGAGCGG
CCGGACCATACTGGCCGACCTGGACAAGCTGAACCTGGACGTGTTCCAGACGACGCAGAA
CCTCGACCAGGCGCTAGCCCAGATCGAGGGCTGCCAGGCGGAGATGCAGACCATCCGGCA
GCGGATCGTGCACGAGGAGCAGCAGCTCCGGAATATCTTATCACCATTGCACCAGACGGG
CGATAGTGAAAAGCACGAACAGGAATGTCGCGAACGAATTCGAGGATTGCAATCCCAGAT
GAATCAGTTGAATGATAAGATAAAGCTGTTGCTGCGCCGCGGCGCTCCGGATCCGTAGCC
GTCGGTACATTTAAGCTATCGATTTCCGGAGCGATCTGCGTCTGCTGGTAGCATCTCTGG
ATAGGTTTGGCATTCTTGAGCCTGGAAAGAGCGCGC

consensusID : consensus_6873#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 536
fasta sequence

                              [ATCGCCCCANGTTAATACGAGCGGAAGATCGAGAGCGTACGGGAGTGGATAAAAGGACGCCTATCTGGCCTTAATTCTGGCGAGCTGAAGAGCAAACCGTTGCGCGATCAGCTCCGCATACTGGAGCAGATGCTGGCGGACATCTCCGCCCAGAAGATCAAGGTCAACATGTCGCTGGAGAAGCTGCAGGTCCACTTCCATTCCGACATCATCTACACGGACAACCCGACGATCGTGCAGAGCGGCCGGACCATACTGGCCGACCTGGACAAGCTGAACCTGGACGTGTTCCAGACGACGCAGAACCTCGACCAGGCGCTAGCCCAGATCGAGGGCTGCCAGGCGGAGATGCAGACCATCCGGCAGCGGATCGTGCACGAGGAGCAGCAGCTCCGGAATATCTTATCACCATTGCACCAGACGGGCGATAGTGAAAAGCACGAACAGGAATGTCGCGAACGAATTCGAGGATTGCAATCCCAGATGAATCAGTTGAATGATAAGATAAAGCTGTTGCTGCGCCGCGGCGCTCCGGA]

[+] EMBL AL695788             [ATCGCCCCANGTTAATACGAGCGGAAGATCGAGAGCGTACGGGAGTGGATAAAAGGACGCCTATCTGGCCTTAATTCTGGCGAGCTGAAGAGCAAACCGTTGCGCGATCAGCTCCGCATACTGGAGCAGATGCTGGCGGACATCTCCGCCCAGAAGATCAAGGTCAACATGTCGCTGGAGAAGCTGCAGGTCCACTTCCATTCCGACATCATCTACACGGACAACCCGACGATCGTGCAGAGCGGCCGGACCATACTGGCCGACCTGGACAAGCTGAACCTGGACGTGTTCCAGACGACGCAGAACCTCGACCAGGCGCTAGCCCAGATCGAGGGCTGCCAGGCGGAGATGCAGACCATCCGGCAGCGGATCGTGCACGAGGAGCAGCAGCTCCGGAATATCTTATCACCATTGCACCAGACGGGCGATAGTGAAAAGCACGAACAGGAATGTCGCGAACGAATTCGAGGATTGCAATCCCAGATGAATCAGTTGAATGATAAGATAAAGCTGTTGCTGCGCCGCGGCGCTCCGGA]




>consensus_6873#1
ATCGCCCCANGTTAATACGAGCGGAAGATCGAGAGCGTACGGGAGTGGATAAAAGGACGC
CTATCTGGCCTTAATTCTGGCGAGCTGAAGAGCAAACCGTTGCGCGATCAGCTCCGCATA
CTGGAGCAGATGCTGGCGGACATCTCCGCCCAGAAGATCAAGGTCAACATGTCGCTGGAG
AAGCTGCAGGTCCACTTCCATTCCGACATCATCTACACGGACAACCCGACGATCGTGCAG
AGCGGCCGGACCATACTGGCCGACCTGGACAAGCTGAACCTGGACGTGTTCCAGACGACG
CAGAACCTCGACCAGGCGCTAGCCCAGATCGAGGGCTGCCAGGCGGAGATGCAGACCATC
CGGCAGCGGATCGTGCACGAGGAGCAGCAGCTCCGGAATATCTTATCACCATTGCACCAG
ACGGGCGATAGTGAAAAGCACGAACAGGAATGTCGCGAACGAATTCGAGGATTGCAATCC
CAGATGAATCAGTTGAATGATAAGATAAAGCTGTTGCTGCGCCGCGGCGCTCCGGA

consensusID : consensus_6873#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 448
fasta sequence

                              [ACGGCACGAGGCTGAATAGCAAGCTAACGACACTGACCGGGGAGTTTGGCGACATGCGTACGGCACACGAGCAGCTACTGTTCAATGGCAATGAAATCGTGCGCCACTGTACCGAGTCGAGCGATCGGACGGCCACGCAGGCCAACATGGATCAGCTTACGCACGAGCTGGACAAAACGATCGCGCTGATCGAGCAGAAGAACCAGACGGTCGATCAGATCCTCGGCAATTGGGCGAACTTTATGCGGCTGTACCAGTCCGTGGTGGACTGGTCGATCAAGATACGGGCGCTGCTGGAGCGCAAGCTGCAGCTGAACACGCTGCACGAGGCACAGCAAGCCTGCCAGAATTATTCGGGCGCAGTTGCCAGTCTTGCGGACGTGTCACAGAATTTGAGCGAAATGAATCACGAGTTCGATAAAATTAACGAAGTTTGCTCGACGGCCTA]

[+] EMBL BX619482             [ACGGCACGAGGCTGAATAGCAAGCTAACGACACTGACCGGGGAGTTTGGCGACATGCGTACGGCACACGAGCAGCTACTGTTCAATGGCAATGAAATCGTGCGCCACTGTACCGAGTCGAGCGATCGGACGGCCACGCAGGCCAACATGGATCAGCTTACGCACGAGCTGGACAAAACGATCGCGCTGATCGAGCAGAAGAACCAGACGGTCGATCAGATCCTCGGCAATTGGGCGAACTTTATGCGGCTGTACCAGTCCGTGGTGGACTGGTCGATCAAGATACGGGCGCTGCTGGAGCGCAAGCTGCAGCTGAACACGCTGCACGAGGCACAGCAAGCCTGCCAGAATTATTCGGGCGCAGTTGCCAGTCTTGCGGACGTGTCACAGAATTTGAGCGAAATGAATCACGAGTTCGATAAAATTAACGAAGTTTGCTCGACGGCCTA]




>consensus_6873#2
ACGGCACGAGGCTGAATAGCAAGCTAACGACACTGACCGGGGAGTTTGGCGACATGCGTA
CGGCACACGAGCAGCTACTGTTCAATGGCAATGAAATCGTGCGCCACTGTACCGAGTCGA
GCGATCGGACGGCCACGCAGGCCAACATGGATCAGCTTACGCACGAGCTGGACAAAACGA
TCGCGCTGATCGAGCAGAAGAACCAGACGGTCGATCAGATCCTCGGCAATTGGGCGAACT
TTATGCGGCTGTACCAGTCCGTGGTGGACTGGTCGATCAAGATACGGGCGCTGCTGGAGC
GCAAGCTGCAGCTGAACACGCTGCACGAGGCACAGCAAGCCTGCCAGAATTATTCGGGCG
CAGTTGCCAGTCTTGCGGACGTGTCACAGAATTTGAGCGAAATGAATCACGAGTTCGATA
AAATTAACGAAGTTTGCTCGACGGCCTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6873#0      AATCCCCGAGGTTAGAAGAACAGACGGTCGATCAGATCTCGGCAATTGGGCGAACTTTAT 60
consensus_6873#1      ------------------------------------------------------------
consensus_6873#2      ------------------------------------------------------------
                                                                                  

consensus_6873#0      GCGGCTGTACCAGTCCGTGGTGGACTGGTCGATCAAGATACGGGCGCTGCTGGAGCGCAA 120
consensus_6873#1      ------------------------------------------------------------
consensus_6873#2      ------------------------------------------------------------
                                                                                  

consensus_6873#0      GCTGCAGCTGAACACGCTGCACGAGGCACAGCAAGCCTGCCAGAATTATTCGGGCGCAGT 180
consensus_6873#1      ------------------------------------------------------------
consensus_6873#2      ------------------------------------------------------------
                                                                                  

consensus_6873#0      TGCCAGTCTTGCGGACGTGTCACAGAATTTGAGCGAAATGAATCACGAGTTCGATAAAAT 240
consensus_6873#1      ------------------------------------------------------------
consensus_6873#2      ------------------------------------------------------------
                                                                                  

consensus_6873#0      TAACGAAGTTTGCTCGACGGCCTACCTGAGAGGCAAACTACACGAGGCGGAAACGCTGAA 300
consensus_6873#1      ------------------------------------------------------------
consensus_6873#2      ------------------------------------------------------------
                                                                                  

consensus_6873#0      AATCGACATCGAGACAGTGCTGTTTGAAAGGAATCTGTTCCTGCACGAAACGACCGAAGA 360
consensus_6873#1      -------------------------------------------------------ATCGC 5
consensus_6873#2      ------------------------------------------------------------
                                                                                  

consensus_6873#0      GTGGCAGCAGTACGAGCGGAAGATCGAGAGCGTACGGGAGTGGATAAA-GGACGCCTAT- 418
consensus_6873#1      CCCANGTTAATACGAGCGGAAGATCGAGAGCGTACGGGAGTGGATAAAAGGACGCCTAT- 64
consensus_6873#2      ----------------------------ACGGCACGAGGCTGAATAGCAAGCTAACGACA 32
                                                  *  * *** *  ** ***    *    * *  

consensus_6873#0      CAGGCCTTGAATTCTGGCGAGCTGAAGAGCAAACCGTTGCGCGATCAGCTCCGCATACTG 478
consensus_6873#1      CTGGCCTT-AATTCTGGCGAGCTGAAGAGCAAACCGTTGCGCGATCAGCTCCGCATACTG 123
consensus_6873#2      CTGACCGGGGAGTTTGGCGACATGCGTA------CGGCACACGAGCAGCTAC-TGTTCAA 85
                      * * **    * * ******  **   *      **   * *** ***** *   * *  

consensus_6873#0      GAGCAGATGCTGGCGGACATCTCCGCCCAGAAGATCAAGGTCAACATGTCGCTGGAGAAG 538
consensus_6873#1      GAGCAGATGCTGGCGGACATCTCCGCCCAGAAGATCAAGGTCAACATGTCGCTGGAGAAG 183
consensus_6873#2      TGGCA-ATGAAATCGTGCGCCACTGTACCGAGTCGAGCGATCGGACGGCCACGCAGGCCA 144
                        *** ***    **  *  * * *  * **       * **     * * *    *   

consensus_6873#0      CTGCAGGTCCACTTCCATTCCGACATCATCTACACGGACAACCCGACGATCGTGCAGAGC 598
consensus_6873#1      CTGCAGGTCCACTTCCATTCCGACATCATCTACACGGACAACCCGACGATCGTGCAGAGC 243
consensus_6873#2      ACATGGATCAGCTTACGCACGAGC----TGGACAAAACGATCGCGCTGATCGAGCAGAAG 200
                           * **  *** *   *   *    *  ***     * * **  ***** *****  

consensus_6873#0      GGCCGGACCATACTGGCCGACCTGGACAAGCTGAACCTGGACGTGTTCCAGACGACGCAG 658
consensus_6873#1      GGCCGGACCATACTGGCCGACCTGGACAAGCTGAACCTGGACGTGTTCCAGACGACGCAG 303
consensus_6873#2      AACCAGAC------GGTCGATC-AGATCCTCGGCAATTGGGCGAACTTTATGCGGCT--- 250
                        ** ***      ** *** *  **    * * *  *** **   *  *  ** *    

consensus_6873#0      AACCTCGACCAGGCGCTAGCCCAGATCGAGGGCTGCCAGGCGGAGATGCAGACCATCCGG 718
consensus_6873#1      AACCTCGACCAGGCGCTAGCCCAGATCGAGGGCTGCCAGGCGGAGATGCAGACCATCCGG 363
consensus_6873#2      ------------GTACCAGTCCG--TGGTGGACTGGTCGATCAAGATACGGGCGCTGCTG 296
                                  *  * ** **   * * ** ***   *    **** * * *  * * *

consensus_6873#0      CAGCGGATCGTGCACGAGGAGCAGCAGCTCCGGAATATCTTATCACCATTGCACCAGACG 778
consensus_6873#1      CAGCGGATCGTGCACGAGGAGCAGCAGCTCCGGAATATCTTATCACCATTGCACCAGACG 423
consensus_6873#2      GAGCGCA------------AGCTGCAGCT---GAACACGCTGCACGAGGCACAGCAAGCC 341
                       **** *            *** ******   *** *   *          ** **  * 

consensus_6873#0      GGCGATAGTGAA--AAGCACGAACAGGAATGTCGCGAACGAATTCGAGGATTGCAATCCC 836
consensus_6873#1      GGCGATAGTGAA--AAGCACGAACAGGAATGTCGCGAACGAATTCGAGGATTGCAATCCC 481
consensus_6873#2      TGCCAGAATTATTCGGGCGCAGTTGCCAGTCTTGCGGACGTGTCACAGAATTTGAG--CG 399
                       ** * * * *     ** *       * * * *** ***  *   ** ***  *   * 

consensus_6873#0      AGATGAATCAGTTGAATGATAAGATAAAGCTGTTGCTGCGCCGCGGCGCTCCGGATCCGT 896
consensus_6873#1      AGATGAATCAGTTGAATGATAAGATAAAGCTGTTGCTGCGCCGCGGCGCTCCGGA----- 536
consensus_6873#2      AAATGAATCACGAGTTCGATAAAATTAA-CGAAGTTTGCTCGACGGCCTA---------- 448
                      * ********   *   ***** ** ** *      *** *  ****             

consensus_6873#0      AGCCGTCGGTACATTTAAGCTATCGATTTCCGGAGCGATCTGCGTCTGCTGGTAGCATCT 956
consensus_6873#1      ------------------------------------------------------------
consensus_6873#2      ------------------------------------------------------------
                                                                                  

consensus_6873#0      CTGGATAGGTTTGGCATTCTTGAGCCTGGAAAGAGCGCGC 996
consensus_6873#1      ----------------------------------------
consensus_6873#2      ----------------------------------------