cluster # 6874

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Anopheles gambiae
cluster # 6874 cluster # 6874 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6874#0 length = 1205 sequences # 5

consensus_6874#1 length = 437 sequences # 1

consensusID : consensus_6874#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1205
fasta sequence

                              [CACAGACACAGCGAGGACTTCACGGATACGACGACGATGTCGAAACAATTGGAGCCAAACAAGTCGTTTTGAGCTTTTAAAACTATTCGTTGATTACCGGACACGGCAACTGACAAAACAGTAAGTAGGTACGTGTTTAGCAAAAGGAAAAGCTGTAGATCATCCATTTGAACCATGGGCAGAAACCTAAATTCACCGACAGATAAGAAGATACACATTGGGACACTAGTTGAACAAGTTGTGGCAAGTGTTTTTCAACTCGCGATTACAACAACAACAAAAACAACAGCAGAAGTAAGAACAGAGCGAATGCATGTAAAACAATGATTTCATTAACAAAAACATACATACACCTATCAAAAGCTGAATAAACTAAAAATATCAATTTTGTGGATAACCTATTTAGAGCAACGTACGTACGAAAATGATCCAAGATCTAGAAACCTAGGACT---ATGTCACAGAACAAGCTGGAACAAGCATGTGCCCGGCCCAAGATGCCACACAGCTGCTGCTCGGGTTGGATCAGGAGTGTGAAGAGTAGCAGAACAGACAGAACCAAATAAAAGGCACATAAACTAGCAAAGGATGATACGGCAAAGGGCTTAACAAAAGGCAAAAAGGGCGCAGAAAAGAAAGATATATTTGGACAGAGAACAGAAGTATGCAAGGGAAACAATATTTAAAGTATAAAGGATACATAGTTGTCAGTAGCAAATTACAATTAAAAAAAAACACAAAAATGAAAATCAATCAACCATCATCAGCAGCAGACTCAAAACAGGATGAAAACAAAACGCTTTTCTGTTGATCGGTACTACCATGCTGAAGATTGAATTGATCTTGTGGAAATTGTGCAAAACATCACCTACACCGATCTTGCCTACATTTAGGCGCAAAAGCTGCAATCCGCATGGCAGCGTAACGCTACCGGGGTAAAAGTAACGTCTGCATTTGCCCGGTCCGAGCGGTGAGACAATAGCAAATGCCCCGATAAAAACCACCAAACCCTAGCAGCTGCTGCTGATGGCAGTTGATTTAATTTCATTTCCTTTCTCGACGCCATCTGTATGTTCCGCCGTTGCGTTGTCGTTCTTGTTCTGTTTTTGTATAAAACACCCCGTTGCGTACAGAAATGCCGGCAAACCAGAAACAAGCGAGCAAACAAAAACATCTTTACAATTAAATTGTATCCAGTAGGCAAATTA]

[+] EMBL BX622000             [CACAGACACAGCGAGGACTTCACGGATACGACGACGATGTCGAAACAATTGGAGCCAAACAAGTCGTTTTGAGCTTTTAAAACTATTCGTTGATTACCGGACACGGCAACTGACAAAACAGTAAGTAGGTACGTGTTTAGCAAAAGGAAAAGCTGTAGATCATCCATTTGAACCATGGGCAGAAACCTAAATTCACCGACAGATAAGAAGATACACATTGGGACACTAGTTGAACAAGTTGTGGCAAGTGTTTTTCAACTCGCGATTACAACAACAACAAAAACAACAGCAGAAGTAAGAACAGAGCGAATGCATGTAAAACAATGATTTCATTAACAAAAACATACATACACCTATCAAAAGCTGAATAAACTAAAAATATCAATTTTGTGGATAACCTATTTAGAGCAACGTACGTACGAAAATGATCCAAGATCTAGAAACCTAGGACTCACATGTCACAGAACAAGCTGGAACAAGCATGTGCCCGGCCCAAGATGCCACACAGCTGCTGCTCGGGTTGGATCAGGAGTGTGAAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BX613638             [                                                                                                                                                                                                                                                                                                                                                                                                         ATAACCTATTTAGAGCAACGTACGTACGATAATGATCCAAGATCTAGAAACCTAGGACT   ATGTCACAGAACAAGCTGGAACAAGCATGTGCCCGGCCCAAGATGCCACACAGCTGCTGCTCGGGTTGGATCAGGAGTGTGAAGAGTAGCAGAACAGACAGAACCAAATAAAAGGCACATAAACTAGCAAAGGATGATACGGCAAAGGGCTTAACAAAAGGCAAAAAGGGCGCAGAAAAGAAAGATATATTTGGACAGAGAACAGAAGTATGCAAGGGAAACAATATTTAAAGTATAAAGGATACATAGTTGTCAGTAGCAAATTACAATTAAAAAAAAACACAAAAATGAAAATCAATCAACCATCATCAGCAGCAGACTCAAAACAGGATGAAAACAAAACGCTTTTCTGTTGATCGGTACTACCATGCTGAAGATTGAATTGA                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BX608178             [                                                                                                                                                                                                                                                                                                                                                                                                                                                               GGACT   ATGTCACAGAACAAGCTGGAACAAGCATGTGCCCGGCCCAAGATGCCACACAGCTGCTGCTCGGGTTGGATCAGGAGTGTGAAGAGTAGCAGAACAGACAGAACCAAATAAAAGGCACATAAACTAGCAAAGGATGATACTGCAAAGGGCGTAACAAAAGGCAAAAAGGGCGCAGAAAAGAAAGAAATATTTGGACAGAGAACAGAAGTATGCAAGGGAAACAATATTTAAAGTATAAAGGAAACATAGTTGTCAGTAGCAAATTACAATTAAAAAAAAACACAAAAATGAAAATCAATCAACCATCATCAGCAGCAGACTCAAAACAGGATGAAAACAAAACGCTTTTCTGTTGATCGGTACTACCATGCTGAAGAATGAATTGATCTTGTGGAAATTGTGCAAAACATCACCTACACCGATCTTGCCTACATTTAGGCGCAAAAGCTGCAATCCGCATGGCAGCGTAACGCTACCGGGGTAAAAGTAACGTCTGCATTTGCCCGGTCCGAGCGGTGAGACAATAG                                                                                                                                                                                                                                  ]
[+] EMBL BX616993             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AAACAATATTTAAAGTATAAAGGATACATAGTTGTCAGTAGCAAATTACAATTAAAAAAAAACACAAAAATGAAAATCAATCAACCATCATCAGCAGCAGACTCAAAACAGGATGAAAACAAAACGCTTTTCTGTTGATCGGTACTACCATGCTGAAGATTGAATTGATCTTGTGGAAATTGTGCAAAACATCACCTACACCGATCTTGCCTACATTTAGGCGCAAAAGCTGCAATCCGCATGGCAGCGTAACGCTACCGGGGTAAAAGTAACGTCTGCATTTGCCCGGTCCGAGCGGTGAGACAATAGCAAATGCCCCGATAAAAACCACCAAACCCTAGCAGCTGCTGCTGATGGCAGTTGATTTAATTTCATTTCCTTTCTCGACGCCATCTGTATGTTCCGCCGTTGCGTTGTCGTTCTTGTTCTGTTTTTGTATAAAACACCCCGTTGCGTACAGAAATGCCGGCAAACCAGAAACAAGCGAGCAAACAAAAACATCTTTACAATTAAATTGTATCCAGTAGGCAAATTA]
[+] EMBL BX609922             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AAAAACACAAAAATGAAAATCAATCAACCATCATCAGCAGCAGACTCAAAACAGGATGAAAACAAAACGCTTTTCTGTTGATCGGTACTACCATGCTGAAGATTGAATTGATCTTGTGGAAATTGTGCAAAACATCACCTACACCGATCTTGCCTACATTTAGGCGCAAAAGCTGCAATCCGCATGGCAGCGTAACGCTACCGGGGTAAAAGTAACGTCTGCATTTGCCCGGTCCGAGCGGTGAGACAATAGCAAATGCCCCGATAAAAACCACCAAACCCTAGCAGCTGCTGCTGATGGCAGTTGATTTAATTTCATTTCCTTTCTCGACGCCATCTGTATGTTCCGCCGTTGCGTTGTCGTTCTTGTTCTGTTTTTGTATAAAACACCCCGTTGCGTACAGAAATGCCGGCAAACCAGAAACAAGCGAGCAAACAAAAACATCTTTACAATTAAATTGTATCCAGTAGGCAAATTA]




>consensus_6874#0
CACAGACACAGCGAGGACTTCACGGATACGACGACGATGTCGAAACAATTGGAGCCAAAC
AAGTCGTTTTGAGCTTTTAAAACTATTCGTTGATTACCGGACACGGCAACTGACAAAACA
GTAAGTAGGTACGTGTTTAGCAAAAGGAAAAGCTGTAGATCATCCATTTGAACCATGGGC
AGAAACCTAAATTCACCGACAGATAAGAAGATACACATTGGGACACTAGTTGAACAAGTT
GTGGCAAGTGTTTTTCAACTCGCGATTACAACAACAACAAAAACAACAGCAGAAGTAAGA
ACAGAGCGAATGCATGTAAAACAATGATTTCATTAACAAAAACATACATACACCTATCAA
AAGCTGAATAAACTAAAAATATCAATTTTGTGGATAACCTATTTAGAGCAACGTACGTAC
GAAAATGATCCAAGATCTAGAAACCTAGGACTATGTCACAGAACAAGCTGGAACAAGCAT
GTGCCCGGCCCAAGATGCCACACAGCTGCTGCTCGGGTTGGATCAGGAGTGTGAAGAGTA
GCAGAACAGACAGAACCAAATAAAAGGCACATAAACTAGCAAAGGATGATACGGCAAAGG
GCTTAACAAAAGGCAAAAAGGGCGCAGAAAAGAAAGATATATTTGGACAGAGAACAGAAG
TATGCAAGGGAAACAATATTTAAAGTATAAAGGATACATAGTTGTCAGTAGCAAATTACA
ATTAAAAAAAAACACAAAAATGAAAATCAATCAACCATCATCAGCAGCAGACTCAAAACA
GGATGAAAACAAAACGCTTTTCTGTTGATCGGTACTACCATGCTGAAGATTGAATTGATC
TTGTGGAAATTGTGCAAAACATCACCTACACCGATCTTGCCTACATTTAGGCGCAAAAGC
TGCAATCCGCATGGCAGCGTAACGCTACCGGGGTAAAAGTAACGTCTGCATTTGCCCGGT
CCGAGCGGTGAGACAATAGCAAATGCCCCGATAAAAACCACCAAACCCTAGCAGCTGCTG
CTGATGGCAGTTGATTTAATTTCATTTCCTTTCTCGACGCCATCTGTATGTTCCGCCGTT
GCGTTGTCGTTCTTGTTCTGTTTTTGTATAAAACACCCCGTTGCGTACAGAAATGCCGGC
AAACCAGAAACAAGCGAGCAAACAAAAACATCTTTACAATTAAATTGTATCCAGTAGGCA
AATTA

consensusID : consensus_6874#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 437
fasta sequence

                              [AGAATCGGCCACGAGGTTANAAAATATCAATTTTGTGGATAACCTATTTAGAGCAACGTACGTACGAAAATGATCCAAGATCTAGAAACCTAGGACTCACATGTCACAGAACAAGCTGGAACAAGCATGTGCCCGGCCCAAGATGCCACACAGCTGCTGCTCGGGTTGGATCACGGAGTGTGAAGAGTAGCANGGAACAGACAGAACCAAATAAAAGGCACNTAAACTAGCAANAGGATGATACGGCAAAGGGCGTAACAAAAGGCAAACAACGGGCGCACGAACCAACGCAAAGATATATTTGGACAGAGAACACGAACGTATGCAAAGGAAACAATATTTACAACGTACTAAACGGATACNTACGCTTGTCAGTAGCAACATTTACACATTAACAACACANACAGACCAACANCTGACCATTCAATCAACCCATC]

[+] EMBL BX469485             [AGAATCGGCCACGAGGTTANAAAATATCAATTTTGTGGATAACCTATTTAGAGCAACGTACGTACGAAAATGATCCAAGATCTAGAAACCTAGGACTCACATGTCACAGAACAAGCTGGAACAAGCATGTGCCCGGCCCAAGATGCCACACAGCTGCTGCTCGGGTTGGATCACGGAGTGTGAAGAGTAGCANGGAACAGACAGAACCAAATAAAAGGCACNTAAACTAGCAANAGGATGATACGGCAAAGGGCGTAACAAAAGGCAAACAACGGGCGCACGAACCAACGCAAAGATATATTTGGACAGAGAACACGAACGTATGCAAAGGAAACAATATTTACAACGTACTAAACGGATACNTACGCTTGTCAGTAGCAACATTTACACATTAACAACACANACAGACCAACANCTGACCATTCAATCAACCCATC]




>consensus_6874#1
AGAATCGGCCACGAGGTTANAAAATATCAATTTTGTGGATAACCTATTTAGAGCAACGTA
CGTACGAAAATGATCCAAGATCTAGAAACCTAGGACTCACATGTCACAGAACAAGCTGGA
ACAAGCATGTGCCCGGCCCAAGATGCCACACAGCTGCTGCTCGGGTTGGATCACGGAGTG
TGAAGAGTAGCANGGAACAGACAGAACCAAATAAAAGGCACNTAAACTAGCAANAGGATG
ATACGGCAAAGGGCGTAACAAAAGGCAAACAACGGGCGCACGAACCAACGCAAAGATATA
TTTGGACAGAGAACACGAACGTATGCAAAGGAAACAATATTTACAACGTACTAAACGGAT
ACNTACGCTTGTCAGTAGCAACATTTACACATTAACAACACANACAGACCAACANCTGAC
CATTCAATCAACCCATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6874#0      CACAGACACAGCGAGGACTTCACGGATACGACGACGATGTCGAAACAATTGGAGCCAAAC 60
consensus_6874#1      ------------------------------------------------------------
                                                                                  

consensus_6874#0      AAGTCGTTTTGAGCTTTTAAAACTATTCGTTGATTACCGGACACGGCAACTGACAAAACA 120
consensus_6874#1      ------------------------------------------------------------
                                                                                  

consensus_6874#0      GTAAGTAGGTACGTGTTTAGCAAAAGGAAAAGCTGTAGATCATCCATTTGAACCATGGGC 180
consensus_6874#1      ------------------------------------------------------------
                                                                                  

consensus_6874#0      AGAAACCTAAATTCACCGACAGATAAGAAGATACACATTGGGACACTAGTTGAACAAGTT 240
consensus_6874#1      ------------------------------------------------------------
                                                                                  

consensus_6874#0      GTGGCAAGTGTTTTTCAACTCGCGATTACAACAACAACAAAAACAACAGCAGAAGTAAGA 300
consensus_6874#1      ------------------------------------------------------------
                                                                                  

consensus_6874#0      ACAGAGCGAATGCATGTAAAACAATGATTTCATTAACAAAAACATACATACACCTATCAA 360
consensus_6874#1      -------------------------------------------------------AGAAT 5
                                                                             *  * 

consensus_6874#0      AAGCTGAATAAACTAAAAATATCAATTTTGTGGATAACCTATTTAGAGCAACGTACGTAC 420
consensus_6874#1      CGGCCACGAGGTTANAAAATATCAATTTTGTGGATAACCTATTTAGAGCAACGTACGTAC 65
                        **           *********************************************

consensus_6874#0      GAAAATGATCCAAGATCTAGAAACCTAGGACT---ATGTCACAGAACAAGCTGGAACAAG 477
consensus_6874#1      GAAAATGATCCAAGATCTAGAAACCTAGGACTCACATGTCACAGAACAAGCTGGAACAAG 125
                      ********************************   *************************

consensus_6874#0      CATGTGCCCGGCCCAAGATGCCACACAGCTGCTGCTCGGGTTGGATCA-GGAGTGTGAAG 536
consensus_6874#1      CATGTGCCCGGCCCAAGATGCCACACAGCTGCTGCTCGGGTTGGATCACGGAGTGTGAAG 185
                      ************************************************ ***********

consensus_6874#0      AGTAGCAG--AACAGACAGAACCAAATAAAAGGCACATAAACTAGCAAA-GGATGATACG 593
consensus_6874#1      AGTAGCANGGAACAGACAGAACCAAATAAAAGGCACNTAAACTAGCAANAGGATGATACG 245
                      *******   ************************** ***********  **********

consensus_6874#0      GCAAAGGGCTTAACAAAAGGCAAAAA--GGGCGCAGAAA-----AGAAAGATATATTTGG 646
consensus_6874#1      GCAAAGGGCGTAACAAAAGGCAAACAACGGGCGCACGAACCAACGCAAAGATATATTTGG 305
                      ********* ************** *  *******  **       **************

consensus_6874#0      ACAGAGAACAGAA--GTATGCAAGGGAAACAATATTTAAAGTATA----AAGGATACATA 700
consensus_6874#1      ACAGAGAACACGAACGTATGCAAAGGAAACAATATTTACAACGTACTAAACGGATACNTA 365
                      **********  *  ******** ************** *   **    * ****** **

consensus_6874#0      G--TTGTCAGTAGCAAATTACAATTAAAAAAAAACACAAAAATGAAAATCAATCAACCAT 758
consensus_6874#1      CGCTTGTCAGTAGCAA----CATTTACACATTAACA-ACACANACAGACCAACANCTGAC 420
                         *************    ** *** * *  **** * * *   * * ***      * 

consensus_6874#0      CATCAGCAGCAGACTCAAAACAGGATGAAAACAAAACGCTTTTCTGTTGATCGGTACTAC 818
consensus_6874#1      CATT--CAATCAACCCATC----------------------------------------- 437
                      ***   **    ** **                                           

consensus_6874#0      CATGCTGAAGATTGAATTGATCTTGTGGAAATTGTGCAAAACATCACCTACACCGATCTT 878
consensus_6874#1      ------------------------------------------------------------
                                                                                  

consensus_6874#0      GCCTACATTTAGGCGCAAAAGCTGCAATCCGCATGGCAGCGTAACGCTACCGGGGTAAAA 938
consensus_6874#1      ------------------------------------------------------------
                                                                                  

consensus_6874#0      GTAACGTCTGCATTTGCCCGGTCCGAGCGGTGAGACAATAGCAAATGCCCCGATAAAAAC 998
consensus_6874#1      ------------------------------------------------------------
                                                                                  

consensus_6874#0      CACCAAACCCTAGCAGCTGCTGCTGATGGCAGTTGATTTAATTTCATTTCCTTTCTCGAC 1058
consensus_6874#1      ------------------------------------------------------------
                                                                                  

consensus_6874#0      GCCATCTGTATGTTCCGCCGTTGCGTTGTCGTTCTTGTTCTGTTTTTGTATAAAACACCC 1118
consensus_6874#1      ------------------------------------------------------------
                                                                                  

consensus_6874#0      CGTTGCGTACAGAAATGCCGGCAAACCAGAAACAAGCGAGCAAACAAAAACATCTTTACA 1178
consensus_6874#1      ------------------------------------------------------------
                                                                                  

consensus_6874#0      ATTAAATTGTATCCAGTAGGCAAATTA 1205
consensus_6874#1      ---------------------------