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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6876#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1156 fasta sequence
[CCGCGGACGCGTGGGCGCGGTAGCTGGAACATACCTTCCCCGAGAGCGCGGTGTGAGACTGTTAGATTCGC-GCCCGCTTCACCATGATCGTGTACGCGTTGTTAATTGCGTTGTGCGTTCTCGTGCTGCGCTTTGTCGCTTTCCGCTACAAGGTGTACCGTACCGTTGGCCACTTGCCCGGCCCACCGGTAAACTTTCTCTTGGGCAACACGCTGGAGCTGGTGCGATACGATACACAAGTGTTTTTCGAAAAACTTTTCGAATATTTCCAACGCTATGGAATGATCGTACGGCTCGATATGATCAACAAAGTTTGGATCATATTTTCCTCACCGCACGATATCGAGCAAATCATCTCATCCAATGAGTTCAACCGAAAATCGATGGACTACGACATCCTCCAGGAATGGCTCGGCAACGGCATCCTGCTCGACTACGGCAACACTTGGTTCTCGAACCGACGCGCACTG-ACCGGTGCGTTCCATTTCAAGATTCTCGACACCTACGTGCCGGTGTTTGAGGAGCAGGCGGACGTGCTGGTGCGCAAGCTGCTCGATGCCGGGGGCGCCACGGTTGACATCTTTGCCCTGGTGAAGCTCTACACGCTTGACGTCATCCTCGAGACGTCGATGGGCGTACGGTGCCGGGCGCAGCTGGAAGACTCCGACTACGTACGTGCCGTTTCCGACCTTACGCACATCACGTTCTGGCGGATGTACAACGCGATGGGCTTCTCCGACTGGACCTTCCGGCTGACGAAGCACTACCAAACCTACCGGAAGTCGTTACAGATCAATCGAGAGTTTACCACGTCGGTCATCAAGCAGCGTCGTGCGGAGCTGCTAGCAGCGGGCACATCGGATACTACCAGGCCGGAAAAGGGGCGCCTCTCACTGCTGGACATACTGCTGCGCTCGGATATTACCGGCCGTACGTTTAGCGACGAGGAAGTCTACAGCCAGGTGAACAACTTCATGTTTGCGGGCCACGACACTACGTCCAGTGCCATCACCTTCATCCTGTACGCGTGTGCCAAGCATCCCGAGGTGCAGCAGCGCGTGTACGANGAAATCGTCGCCGAACTGCCGGACGGCGAACCGGTCACCCAGCAGCGCGNTAACAACCTGAAGTACCTGGAGCAGGTGATCAAGGAGTC]
[+] EMBL BM653817 [CCGCGGACGCGTGGGCGCGGTAGCTGGAACATACCTTCCCCGAGAGCGCGGTGTGAGACTGTTAGATTCGC GCCCGCTTCACCATGATCGTGTACGCGTTGTTAATTGCGTTGTGCGTTCTCGTGCTGCGCTTTGTCGCTTTCCGCTACAAGGTGTACCGTACCGTTGGCCACTTGCCCGGCCCACCGGTAAACTTTCTCTTGGGCAACACGCTGGAGCTGGTGCGATACGATACACAAGTGTTTTTCGAAAAACTTTTCGAATATTTCCAACGCTATGGAATGATCGTACGGCTCGATATGATCAACAAAGTTTGGATCATATTTTCCTCACCGCACGATATCGAGCAAATCATCTCATCCAATGAGTTCAACCGAAAATCGATGGACTACGACATCCTCCAGGAATGGCTCGGCAACGGCATCCTGCTCGACTACGGCAACACTTGGTTCTCGAACCGACGCGCACTGCACCGGTGCGTTCCATTTCAAGATTCTCGACACCTACGTGCCGGTGTTTGAGGAGCAGGCGGACGTGCTGGTGCGCAAGCTGCTCGATGCCGGGGGCGCCACGGTTGACATCTTTGCCCTGGTGAAGCTCTACACGCTTGACGTCATCCTCGAGACGTCGATGGGCGTACGGTGCCGGGCGCAGCTGGAAGACTCCGACTACGTACGTGC ]
[+] EMBL BM655730 [ ccGAACATACCTTCCCCGAGAGCGCGGTGTGAGACTGTTAGATTCGC GCCCGCTTCACCATGATCGTGTACGCGTTGTTAATTGCGTTGTGCGTTCTCGTGCTGCGCTTTGTCGCTTTCCGCTACAAGGTGTACCGTACCGTTGGCCACTTGCCCGGCCCACCGGTAAACTTTCTCTTGGGCAACACGCTGGAGCTGGTGCGATACGATACACAAGTGTTTTTCGAAAAACTTTTCGAATATTTCCAACGCTATGGAATGATCGTACGGCTCGATATGATCAACAAAGTTTGGATCATATTTTCCTCACCGCACGATATCGAGCAAATCATCTCATCCAATGAGTTCAACCGAAAATCGATGGACTACGACATCCTCCAGGAATGGCTCGGCAACGGCATCCTGCTCGACTACGGCAACACTTGGTTCTCGAACCGACGCGCACTG ACCGGTGCGTTCCATTTCAAGATTCTCGACACCTACGTGCCGGTGTTTGAGGAGCAGGCGGACGTGCTGGTGCGCAAGCTGCTCGATGCCGGGGGCGCCACGGTTGACATCTTTGCCCTGGTGAAGCTCTACACGCTTGACGTCATCCTCGAGACGTCGATGGGCGTACGGTGCCGGGCGCAGCTGGAAGACTCCGACTACGTACGTGCCGTTTCCGACCT ]
[+] EMBL BM657098 [ ccgACCTTCCCAGAGAGCGCGGTGTGAGACTGTTAGATTCGCGGCCCGCTTCACCATGATCGTGTACGCGTTGTTAATTGCGTTGTGCGTTCTCGTGCTGCGCTTTGTCGCTTTCCGCTACAAGTTGTACCGTACCGTTGGCCACTTGCCCGGCCCACCGGTAAACTTTCTCTTGGGCAACACGCTGGAGCTGGTGCGTTACGATACGCAAGTGTTTTTCGAAAAACTGATGGAATATTTCCAACGCTATGGAACGATCGTGCGGCTCGATATGCTCAACAAAGTTTGGATCATATTTTCCTCGCCGCACGATATCGAGCAAATCATCTCATCCAATGAGTTCAACCGAAAATCGATGGACTACGACATCCTCCAGGAATGGCTCGGCAACGGCATCCTGCTCGACTACGGCAACACTTGGTTCTCGAATCGCCGCGCACTG ACCGGTGCGTTCCATTTCAAGATTCTAGACACCTACGTGCCGGTGTTTGAGGAGCAGGCGGACGTGCTGGTGCGCAAGCTGCTCGATGCCGGTGGCGCCACGGTTGACATCTTTGCCCTGGTGAAGCTCTACACGCTTGACGTCATCCTCGAGACGTCGATGGGCGTACGGTGCCGGGCGCAGCTGGAAGACTCCGACTACGTACGTGCCGTTTCCGACCTTACGCACATCACGTTCTGGCGGATGTACAACG ]
[+] EMBL BX624572 [ ATCGATGGACTACGACATCCTCCAGGAATGGCTCGGCAACGGCATCCTGCTCGACTACGGCAACACTTGGTTCTCGAACCGACGCGCACTG ACCGGTGCGTTCCATTTCAAGATTCTCGACACCTACGTGCCGGTGTTTGAGGAGCAGGCGGACGTGCTGGTGCGCAAGCTGCTCGATGCCGGGGGCGCCACGGTTGACATCTTTGCCCTGGTGAAGCTCTACACGCTTGACGTCATCCTCGAGACGTCGATGGGCGTACGGTGCCGGGCGCAGCTGGAAGACTCCGACTACGTACGTGCCGTTTCCGACCTTACGCACATCACGTTCTGGCGGATGTACAACGCGATGGGCTTCTCCGACTGGACCTTCCGGCTGACGAAGCACTACCAAACCTACCGGAAGTCGTTACAGATCAATCGAGAGTTTACCACGTCGGTCATCAAGCAGCGTCGTGCGGAGCTGCTAGCAGCGGGCACATCGGATACTACCAGGCCGGAAAAGGGGCGCCTCTCACTGCTGGACATACTGCTGCGCTCGGATATTACCGGCCGTACGTTTAGCGACGAGGAAGTCTACAGCCAGGTGAACAACTTCATGTTTGCGGGCCACGACACTACGTCCAGTGCCATCACCTTCATCCTGTACGCGTGTGCCAAGCATCCCGAGGTGCAGCAGCGCGTGTACGANGAAATCGTCGCCGAACTGCCGGACGGCGAACCGGTCACCCAGCAGCGCGNTAACAACCTGAAGTACCTGGAGCAGGTGATCAAGGAGTC]
consensusID : consensus_6876#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 770 fasta sequence
[CAGATCCCCCGAGTAAGCGGTAGCTGGAACATACCTTCCCCGAGAGCGCGGTGTGAGACTGTTAGATTCGCGCCCGCTTCACCATGATCGTGTACGCGTTGTTAATTGCGTTGTGCGTTCTCGTGCTGCGCTTTGTCGCTTTCCGCTACAAGGTGTACCGTACCGTTGGCCACTTGCCCGGCCCACCGGTAAACTTTCTCTTGGGCAACACGCTGGAGCTGGTGCGATACGATACACAAGTGTTTTTCGAAAAACTTTTCGAATATTTCCAACGCTATGGAATGATCGTACGGCTCGATATGATCAACAAAGTTTGGATCATATTTTCCTCCCGCACGATATCGAGCAAATCATCTCATCCAATGAGTTCAACCGAAAATCGATGGACTACGACATCCTCCAGGAATGGCTCGGCAACGGCATCCTGCTCGACTACGGCAACACTTGGTTCTCGAACCGACGCGCACTGACCGGTGCGTTCCATTTCAAGATTCTCGACACCTACGTGCCGGTGTTTGAGGAGCAGGCGGACGTGCTGGTGCGCAAGCTGCTCGATGCCGGGGGCGCCACGGTTGACATCTTTGCCCTGGTGAAGCTCTACACGCCTTGACCGTCATCCTCCAAGACGTCCGAATAGGGCGTACAGAGATGCCCGGGCCGCAGCTGGAAGACCTCCGAACTACGTACGTGCCGTTCCGAACCTTACGCACATCANCCGTTCCTGGCGGATGTCCACCGCCATGGGATNCTCCGACTGGAACTTCCGGCCT]
[+] EMBL AL695549 [CAGATCCCCCGAGTAAGCGGTAGCTGGAACATACCTTCCCCGAGAGCGCGGTGTGAGACTGTTAGATTCGCGCCCGCTTCACCATGATCGTGTACGCGTTGTTAATTGCGTTGTGCGTTCTCGTGCTGCGCTTTGTCGCTTTCCGCTACAAGGTGTACCGTACCGTTGGCCACTTGCCCGGCCCACCGGTAAACTTTCTCTTGGGCAACACGCTGGAGCTGGTGCGATACGATACACAAGTGTTTTTCGAAAAACTTTTCGAATATTTCCAACGCTATGGAATGATCGTACGGCTCGATATGATCAACAAAGTTTGGATCATATTTTCCTCCCGCACGATATCGAGCAAATCATCTCATCCAATGAGTTCAACCGAAAATCGATGGACTACGACATCCTCCAGGAATGGCTCGGCAACGGCATCCTGCTCGACTACGGCAACACTTGGTTCTCGAACCGACGCGCACTGACCGGTGCGTTCCATTTCAAGATTCTCGACACCTACGTGCCGGTGTTTGAGGAGCAGGCGGACGTGCTGGTGCGCAAGCTGCTCGATGCCGGGGGCGCCACGGTTGACATCTTTGCCCTGGTGAAGCTCTACACGCCTTGACCGTCATCCTCCAAGACGTCCGAATAGGGCGTACAGAGATGCCCGGGCCGCAGCTGGAAGACCTCCGAACTACGTACGTGCCGTTCCGAACCTTACGCACATCANCCGTTCCTGGCGGATGTCCACCGCCATGGGATNCTCCGACTGGAACTTCCGGCCT]
consensusID : consensus_6876#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 375 fasta sequence
[GGCAGGATTCGTCCCCGACTGTNGACATACTGCTGCGCTCGGATATATACCGGCCGTGACGTTTAGCGACGAGGAAGTCTACAGCCAGGTGAACAACTTCATGTTTGCGGGCCACGACACTACGTCCAGTGCCATCACCTTCATCCTGTACGCGTGTGCCAAGCATCCCGAGGTGCAGCAGGCGTGTACGAGGAAATCGTCGCGAACTGTCTGGACGGCGAACCGGTCACCCAGCAGCGCGTTAACAACCTTGAAGTACCTGGAGCAGGTGATCAAGGAGTCGCTGCGAATGTTCCCCCCGGTGCCGTACTACTCGCGGGACATCGATCACTGACACTACGCAGGGTGGCGTTCGGGTCGAGAAGGGTTCGACGA]
[+] EMBL AL697089 [GGCAGGATTCGTCCCCGACTGTNGACATACTGCTGCGCTCGGATATATACCGGCCGTGACGTTTAGCGACGAGGAAGTCTACAGCCAGGTGAACAACTTCATGTTTGCGGGCCACGACACTACGTCCAGTGCCATCACCTTCATCCTGTACGCGTGTGCCAAGCATCCCGAGGTGCAGCAGGCGTGTACGAGGAAATCGTCGCGAACTGTCTGGACGGCGAACCGGTCACCCAGCAGCGCGTTAACAACCTTGAAGTACCTGGAGCAGGTGATCAAGGAGTCGCTGCGAATGTTCCCCCCGGTGCCGTACTACTCGCGGGACATCGATCACTGACACTACGCAGGGTGGCGTTCGGGTCGAGAAGGGTTCGACGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6876#0 CCGCGGACGCGTGGGCGCGGTAGCTGGAACATACCTTCCCCGAGAGCGCGGTGTGAGACT 60
consensus_6876#1 CAGATCCCCCGAGTAAGCGGTAGCTGGAACATACCTTCCCCGAGAGCGCGGTGTGAGACT 60
consensus_6876#2 ------------------------------------------------------------
consensus_6876#0 GTTAGATTCGCGCCCGCTTCACCATGATCGTGTACGCGTTGTTAATTGCGTTGTGCGTTC 120
consensus_6876#1 GTTAGATTCGCGCCCGCTTCACCATGATCGTGTACGCGTTGTTAATTGCGTTGTGCGTTC 120
consensus_6876#2 ------------------------------------------------------------
consensus_6876#0 TCGTGCTGCGCTTTGTCGCTTTCCGCTACAAGGTGTACCGTACCGTTGGCCACTTGCCCG 180
consensus_6876#1 TCGTGCTGCGCTTTGTCGCTTTCCGCTACAAGGTGTACCGTACCGTTGGCCACTTGCCCG 180
consensus_6876#2 ------------------------------------------------------------
consensus_6876#0 GCCCACCGGTAAACTTTCTCTTGGGCAACACGCTGGAGCTGGTGCGATACGATACACAAG 240
consensus_6876#1 GCCCACCGGTAAACTTTCTCTTGGGCAACACGCTGGAGCTGGTGCGATACGATACACAAG 240
consensus_6876#2 ------------------------------------------------------------
consensus_6876#0 TGTTTTTCGAAAAACTTTTCGAATATTTCCAACGCTATGGAATGATCGTACGGCTCGATA 300
consensus_6876#1 TGTTTTTCGAAAAACTTTTCGAATATTTCCAACGCTATGGAATGATCGTACGGCTCGATA 300
consensus_6876#2 -----------------------------------GGCAGGATTCGTCCCCGACTGTNGA 25
* ** ** ** *
consensus_6876#0 TGATCAACAAAGTTTGGAT-CATATTTTCCTCACCGCACGATATCGAGCAAATCATCTCA 359
consensus_6876#1 TGATCAACAAAGTTTGGAT-CATATTTTCCTC-CCGCACGATATCGAGCAAATCATCTCA 358
consensus_6876#2 CATACTGCTGCGCTCGGATATATACCGGCCGTGACGTTTAGCGACGAGGAAGTC--TACA 83
* * * * **** *** ** ** **** ** ** **
consensus_6876#0 TCCAATGAGTTCAACCGAAAATCGATGGACTACGACATCCTCCAGGAATGGCTCGGCAAC 419
consensus_6876#1 TCCAATGAGTTCAACCGAAAATCGATGGACTACGACATCCTCCAGGAATGGCTCGGCAAC 418
consensus_6876#2 GCCAG-GTGAACAACTTCATGTTTGCGGGCCACGACA--CTACGTCCAGTGC-CATCACC 139
*** * * **** * * ** * ****** ** * * ** * ** *
consensus_6876#0 GGCATCCTGCTCGACTACGGCAA-CACTTGGTTCTCGAACCGACGCGCACTGACCGGTGC 478
consensus_6876#1 GGCATCCTGCTCGACTACGGCAA-CACTTGGTTCTCGAACCGACGCGCACTGACCGGTGC 477
consensus_6876#2 TTCATCCTGTACGCGTGTGCCAAGCATCCCGAGGTGCAGCAGGCGTGTAC-GAGGAAATC 198
******* ** * * *** ** * * * * * ** * ** ** *
consensus_6876#0 GTTCCATTTCAAGATTCTCGACACCTACGTGCCGGTGTTTGAGGAGCAGGCGGACGTGCT 538
consensus_6876#1 GTTCCATTTCAAGATTCTCGACACCTACGTGCCGGTGTTTGAGGAGCAGGCGGACGTGCT 537
consensus_6876#2 GTCGCG----AACTGTCTGGACG---GCGAACCGGTCACCCAGCAGCGCGTTAACAACCT 251
** * ** *** *** ** ***** ** *** * ** **
consensus_6876#0 ---GGTGCGCAAGCTGCTCGATGCCGGGGGCGCCACGGTTGACATCTTTGCCCTGGTGAA 595
consensus_6876#1 ---GGTGCGCAAGCTGCTCGATGCCGGGGGCGCCACGGTTGACATCTTTGCCCTGGTGAA 594
consensus_6876#2 TGAAGTACCTGGAGCAGGTGATCAAGGAGTCGCTGCGAATG-----TTCCCCCCGGTGCC 306
** * *** ** * *** ** ** ** *** ****
consensus_6876#0 GCTCTACACGC-TTGAC-GTCATCCTC-GAGACGTC--GAT-GGGCGTACGG---TGCCG 646
consensus_6876#1 GCTCTACACGCCTTGACCGTCATCCTCCAAGACGTCCGAATAGGGCGTACAGAGATGCCC 654
consensus_6876#2 GTACTACTCGC--GGGACATCGATCACTGACACTACGCAGGGTGGCGTTCGG----GTCG 360
* **** *** * ** * * * ** * ***** * * * *
consensus_6876#0 GG--CGCAGCTGGAAGACTCC--GACTACGTACGTGCCGTTTCCGACCTTACGCACATCA 702
consensus_6876#1 GGGCCGCAGCTGGAAGACCTCCGAACTACGTACGTGCCGTTCCGAACCTTACGCACATCA 714
consensus_6876#2 AGA--AGGGTTCGACGA------------------------------------------- 375
* * * ** **
consensus_6876#0 CG---TTCTGGCGGATGTACAACGCGATGGGCTTCTCCGACTGGACCTTCCGGCTGACGA 759
consensus_6876#1 NCCGTTCCTGGCGGATGTCCACCGCCATGGGATNCTCCGACTGGAACTTCCGGCCT---- 770
consensus_6876#2 ------------------------------------------------------------
consensus_6876#0 AGCACTACCAAACCTACCGGAAGTCGTTACAGATCAATCGAGAGTTTACCACGTCGGTCA 819
consensus_6876#1 ------------------------------------------------------------
consensus_6876#2 ------------------------------------------------------------
consensus_6876#0 TCAAGCAGCGTCGTGCGGAGCTGCTAGCAGCGGGCACATCGGATACTACCAGGCCGGAAA 879
consensus_6876#1 ------------------------------------------------------------
consensus_6876#2 ------------------------------------------------------------
consensus_6876#0 AGGGGCGCCTCTCACTGCTGGACATACTGCTGCGCTCGGATATTACCGGCCGTACGTTTA 939
consensus_6876#1 ------------------------------------------------------------
consensus_6876#2 ------------------------------------------------------------
consensus_6876#0 GCGACGAGGAAGTCTACAGCCAGGTGAACAACTTCATGTTTGCGGGCCACGACACTACGT 999
consensus_6876#1 ------------------------------------------------------------
consensus_6876#2 ------------------------------------------------------------
consensus_6876#0 CCAGTGCCATCACCTTCATCCTGTACGCGTGTGCCAAGCATCCCGAGGTGCAGCAGCGCG 1059
consensus_6876#1 ------------------------------------------------------------
consensus_6876#2 ------------------------------------------------------------
consensus_6876#0 TGTACGANGAAATCGTCGCCGAACTGCCGGACGGCGAACCGGTCACCCAGCAGCGCGNTA 1119
consensus_6876#1 ------------------------------------------------------------
consensus_6876#2 ------------------------------------------------------------
consensus_6876#0 ACAACCTGAAGTACCTGGAGCAGGTGATCAAGGAGTC 1156
consensus_6876#1 -------------------------------------
consensus_6876#2 -------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||