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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6886#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1254 fasta sequence
[GCTTTTTTTTTTGGGTTTGCGGCTGTGCCATCTGTCGGAGCCAGCGTTTGGCAAGCTGCATCGATTCTTCCGTGCTGAGATTGCTCAAATTATCGGTCAGATGCTCCTGGATCCATTTCGGCAGCTTGCCCCGCTTGTCCTGCCGGGAGAAGCGCTTGTCCGCGAAGATCATAATACCGTAATCGGTCTTACCACGAATAGCACGACCAACGCACTGTGCCGCATGCCGCAGTGCATCGAAGGTAAGAAAATCGTTCTCCCGTATCTGGAACTGATCGCGCAAATAGTCCAACCGTGCCTTCAGTATGCGCGACTGGGTGTACACGTACGGAATGCCAAACATCAGCACCGCCCGACCGAGATGGTGATCGAAATCCACACCCTCCGACACTTTGCCACGGGCGACGGCCAACAGCACGGCACCGCGGCCGCACTCGCACGCCTTCACGTAGTTCATCAGCGCGTAGGACGTTTCCGCATTGTCCTGCGTTTCGATGAACAGTAGCTTGTAGCGCAGCA-GCGTATCGATGATGCCCTGATCGTACCAGGACGCGACGACCGACTCCAGGTACAGGTAGGAGGTGAAGAAGCACACCACCCCGTCCGGTACGGTTTTGGCCGTCTCCACCAGCAGCTGGCCGTAATTGCGCGTCACCGCCGTATCTTCGCGCGTTTCAAAGCGCGACGAGATGGCGACCTGATCATTACCACGCGCTACAATCATCGGCAGCAAGCAGGGCCGGGCGAGCGTCATCGTGAACGAGCTCATCACGACCGGCTCAAAGTCCAGTATCTTCGGGTACATGTCCATCGGGGACAGCGTGCCGGACGTGATGACCACGCTCTGGAACCGCTGGAAGATCGGTTTCATCGCGATCGACGAATCGAGACAGCTGAAGTGCATGATCGGA-TTCGACACGGTGGGCGTTTTGTCGTCGAACGGCTCGATGATGATGGTAAAGCCCTTCGTGTACGTCGA-CACGAGCGTCGCGAACGAGGTAATGACCGACAGCGGGCCGTACTCGCTCAGGTCCGTGATTTCCAGCGTGCGCAGCAGCGACTGCAACCGATCGGCACAGAAGCGCAGCGGTTTCCGCTCGATGCACACCTTCTGCTGTACGT-CGCGCAAAAACCCGGCCGGACTTTCCTGCACCACGTGCTGGACGCGCAGCCGCGATTTGATGTACTCGATGAAGCGCTTCAGAAAGGACAGGAAGTGATCCGCGTTGCGTATGTTGCCCGGCACGACCTCCC]
[+] EMBL CNS09LQB [GCTTTTTTTTTTGGGTTTGCGGCTGTGCCATCTGTCGGAGCCAGCGTTTGGCAAGCTGCATCGATTCTTCCGTGCTGAGATTGCTCAAATTATCGGTCAGATGCTCCTGGATCCATTTCGGCAGCTTGCCCCGCTTGTCCTGCCGGGAGAAGCGCTTGTCCGCGAAGATCATAATACCGTAATCGGTCTTACCACGAATAGCACGACCAACGCACTGTGCCGCATGCCGCAGTGCATCGAAGGTAAGAAAATCGTTCTCCCGTATCTGGAACTGATCGCGCAAATAGTCCAACCGTGCCTTCAGTATGCGCGACTGGGTGTACACGTACGGAATGCCAAACATCAGCACCGCCCGACCGAGATGGTGATCGAAATCCACACCCTCCGACACTTTGCCACGGGCGACGGCCAACAGCACGGCACCGCGGCCGCACTCGCACGCCTTCACGTAGTTCATCAGCGCGTAGGACGTTTCCGCATTGTCCTGCGTTTCGATGAACAGTAGCTTGTAGCGCA CAGGCGTATCGATGATGCCCTGATCGTACCAGGACGCGACGACCGACTCCAGGTACAGGTAGGAGGTGAAGAAGCACACCACCCCGTCCGGTACGGTTTTGGCCGTCTCCACCAGCAGCTGGCCGTAATTGCGCGTCACCGCCGTATCTTCGCGCGTTTCAAAGCGCGACGAGATGGCGACCTGATCATTACCACGCGCTACAATCATCGGCAGCAAGCAGGGCCGGGCGAGCGTCATCGTGAACGAGCTCATCACGACCGGCTCAAAc ]
[-] EMBL AGA284237 [ AGCCAGCGTTTGGCAAGCTGCATCGATTCTTCCGTGCTGAGATTGCTCAAATTATCGGTCAGATGCTCCTGGATCCATTTCGGCAGCTTGCCCCGCTTGTCCTGCCGGGAGAAGCGCTTGTCCGCGAAGATCATAATACCGTAATCGGTCTTACCACGAATAGCACGACCAACGCACTGTGCCGCATGCCGCAGTGCATCGAAGGTAAGAAAATCGTTCTCCCGTATCTGGAACTGATCGCGCAAATAGTCCAACCGTGCCTTCAGTATGCGCGACTGGGTGTACACGTACGGAATGCCAAACATCAGCACCGCCCGACCGAGATGGTGATCGAAATCCACACCCTCCGACACTTTGCCACGGGCGACGGCCAACAG ]
[+] EMBL AGA284239 [ CCTTCACGTAGTTCATCAGCGCGTAGGACGTTTCCGCATTGTCCTGCGTTTCGATGAACAGTAGCTTGTAGCGCAGCA GCGTATCGATGATGCCCTGATCGTACCAGGACGCGACGACCGACTCCAGGTACAGGTAGGAGGTGAAGAAGCACACCACCCCGTCCGGTACGGTTTTGGCCGTCTCCACCAGCAGCTGGCCGTAATTGCGCGTCACCGCCGTATCTTCGCGCGTTTCAAAGCGCGACGAGATGGCGACCTGATCATTACCACGCGCTACAATCATCGGCAGCAAGCAGGGCCGGGCGAGCGTCATCGTGAACGAGCTCATCACGACCGGCTCAAAGTCCAGTATCTTCGGGTACATGTCCATCGGGGACAACGTGCCGGACGTGATGAC ]
[-] EMBL BX627659 [ AGTAGCTTGTAGCGCAGCA GCGTATCGATGATGCCCTGATCGTACCAGGACGCGACGACCGACTCCAGGTACAGGTAGGAGGTGAAGAAGCACACCACCCCGTCCGGTACGGTTTTGGCCGTCTCCACAAGCAGCTGGCCGTAATTGCGCGTCACCGCCGTATCTTCGCGCGTTTCAAAGCGCGACGAGATGGCAACCTGATCATTGCCACGCGCTACAATCATCGGCAGCAAGCAGGGCCGGGCGAGCGTCATCGTGAACGAGCTCATCACGACCGGCTCAAAGTCCAGTATCTTCGGGTACATGTCCATCGGGGACAGCGTGCCGGACGTGATGACCACGCTCTGGAACCGCTGGAAGATCGGTTTCATCGCGATCGACGAATCGAGACAGCTGAAGTGCATGATCGGA TTCGACACGGTGGGCGTTTTGTCGTCGAACGGCTCGATGATGATGGTAAAGCCCTTCGTGTACGTCGA CACGAGCGTCGCGAACGAGGTAATGACCGACAGCGGGCCGTACTCGCTCAGGTCCGTGATTTCCAGCGTGCGCAGCAGCGACTGCAACCGATCGGCACAGAAGCGCAGCGGTTTCCGCTCGATGCACACCTTCTGCTGTACGT CGCGCAAAAACCCGGCCGGACTTTCCTGCACCACGTGCTGGACGCGCAGCCGCGATTTGATGTACTCGATGAAGCGCTTCAGAAAGGACAGGAAGTGATCCGCGTTGCGTATGTTGCCCGGCACGACCTCCC]
[-] EMBL AL932922 [ ATCGTGAACGAGCTCATCACGACCGGCTCAAAGTCCAGTATCTTCGGGTACATGTCCATCGGGGACAGCGTGCCGGACGTGATGACCACGCTCTGGAACCGCTGGAAGATCGGTTTCATCGCGATCGACGAATCGAGACAGCTGAAGTGCATGATCGGATTTCGACACGGTGGGCGTTTTGTCGTCGAACGGCTCGATGATGATGGTAAAGCCCTTCGTGTACGTCGACCACGAGCGTCGCGAACGAGGTAATTACCGACAGCGGGCCGTACTCGCTCAGGTCCGTGATTTCCAGCGTGCGCAGCAGCGACTGCAACCGATCGGCACAGAAGCGCAGCGGTTTCCGCTCGATGCACACCTTCTGCTGTACGTACGCctgggcc ]
consensusID : consensus_6886#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 380 fasta sequence
[TTTTTTATAATTGAACACCGTTGCTTTATTCTTGCGTACATCAACTCGAACTGTGCTGCTCTCGACCACTCACTGTTTGCCTTGGGCCTGTTTTTCCAGCTTTTCCCGCTCCATGCTTTGCAGTTGCTCGAGCGTAAGTAGCGAAACGCCCAGCTGATCTTCGCGGGTGAACGGCTGTGCCATCTGTCGGAGCCAGCGTTTGGCAAGCTGCATCGATTCTTCCGTGCTGAGATTGCTCAAATTATCGGTCAGATGCTCCTGGATCCATTTCGGCAGCTTGCCCCGCTTGTCCTGCCGGGAGAAGCGCTTGTCCGCCAAGATTATAATACCGTAATCGGTCTTACCACCAATAGCACGACCAACGCACTGTGCCGCATGCC]
[+] EMBL AGA285537 [TTTTTTATAATTGAACACCGTTGCTTTATTCTTGCGTACATCAACTCGAACTGTGCTGCTCTCGACCACTCACTGTTTGCCTTGGGCCTGTTTTTCCAGCTTTTCCCGCTCCATGCTTTGCAGTTGCTCGAGCGTAAGTAGCGAAACGCCCAGCTGATCTTCGCGGGTGAACGGCTGTGCCATCTGTCGGAGCCAGCGTTTGGCAAGCTGCATCGATTCTTCCGTGCTGAGATTGCTCAAATTATCGGTCAGATGCTCCTGGATCCATTTCGGCAGCTTGCCCCGCTTGTCCTGCCGGGAGAAGCGCTTGTCCGCCAAGATTATAATACCGTAATCGGTCTTACCACCAATAGCACGACCAACGCACTGTGCCGCATGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6886#0 ------------------------------------------------------------
consensus_6886#1 TTTTTTATAATTGAACACCGTTGCTTTATTCTTGCGTACATCAACTCGAACTGTGCTGCT 60
consensus_6886#0 ------------------------------------------------------------
consensus_6886#1 CTCGACCACTCACTGTTTGCCTTGGGCCTGTTTTTCCAGCTTTTCCCGCTCCATGCTTTG 120
consensus_6886#0 --------------------------------GCTTTTTTTTTTGGGTTTGCGGCTGTGC 28
consensus_6886#1 CAGTTGCTCGAGCGTAAGTAGCGAAACGCCCAGCTGATCTTCGCGGGTGAACGGCTGTGC 180
*** * ** **** *********
consensus_6886#0 CATCTGTCGGAGCCAGCGTTTGGCAAGCTGCATCGATTCTTCCGTGCTGAGATTGCTCAA 88
consensus_6886#1 CATCTGTCGGAGCCAGCGTTTGGCAAGCTGCATCGATTCTTCCGTGCTGAGATTGCTCAA 240
************************************************************
consensus_6886#0 ATTATCGGTCAGATGCTCCTGGATCCATTTCGGCAGCTTGCCCCGCTTGTCCTGCCGGGA 148
consensus_6886#1 ATTATCGGTCAGATGCTCCTGGATCCATTTCGGCAGCTTGCCCCGCTTGTCCTGCCGGGA 300
************************************************************
consensus_6886#0 GAAGCGCTTGTCCGCGAAGATCATAATACCGTAATCGGTCTTACCACGAATAGCACGACC 208
consensus_6886#1 GAAGCGCTTGTCCGCCAAGATTATAATACCGTAATCGGTCTTACCACCAATAGCACGACC 360
*************** ***** ************************* ************
consensus_6886#0 AACGCACTGTGCCGCATGCCGCAGTGCATCGAAGGTAAGAAAATCGTTCTCCCGTATCTG 268
consensus_6886#1 AACGCACTGTGCCGCATGCC---------------------------------------- 380
********************
consensus_6886#0 GAACTGATCGCGCAAATAGTCCAACCGTGCCTTCAGTATGCGCGACTGGGTGTACACGTA 328
consensus_6886#1 ------------------------------------------------------------
consensus_6886#0 CGGAATGCCAAACATCAGCACCGCCCGACCGAGATGGTGATCGAAATCCACACCCTCCGA 388
consensus_6886#1 ------------------------------------------------------------
consensus_6886#0 CACTTTGCCACGGGCGACGGCCAACAGCACGGCACCGCGGCCGCACTCGCACGCCTTCAC 448
consensus_6886#1 ------------------------------------------------------------
consensus_6886#0 GTAGTTCATCAGCGCGTAGGACGTTTCCGCATTGTCCTGCGTTTCGATGAACAGTAGCTT 508
consensus_6886#1 ------------------------------------------------------------
consensus_6886#0 GTAGCGCAGCAGCGTATCGATGATGCCCTGATCGTACCAGGACGCGACGACCGACTCCAG 568
consensus_6886#1 ------------------------------------------------------------
consensus_6886#0 GTACAGGTAGGAGGTGAAGAAGCACACCACCCCGTCCGGTACGGTTTTGGCCGTCTCCAC 628
consensus_6886#1 ------------------------------------------------------------
consensus_6886#0 CAGCAGCTGGCCGTAATTGCGCGTCACCGCCGTATCTTCGCGCGTTTCAAAGCGCGACGA 688
consensus_6886#1 ------------------------------------------------------------
consensus_6886#0 GATGGCGACCTGATCATTACCACGCGCTACAATCATCGGCAGCAAGCAGGGCCGGGCGAG 748
consensus_6886#1 ------------------------------------------------------------
consensus_6886#0 CGTCATCGTGAACGAGCTCATCACGACCGGCTCAAAGTCCAGTATCTTCGGGTACATGTC 808
consensus_6886#1 ------------------------------------------------------------
consensus_6886#0 CATCGGGGACAGCGTGCCGGACGTGATGACCACGCTCTGGAACCGCTGGAAGATCGGTTT 868
consensus_6886#1 ------------------------------------------------------------
consensus_6886#0 CATCGCGATCGACGAATCGAGACAGCTGAAGTGCATGATCGGATTCGACACGGTGGGCGT 928
consensus_6886#1 ------------------------------------------------------------
consensus_6886#0 TTTGTCGTCGAACGGCTCGATGATGATGGTAAAGCCCTTCGTGTACGTCGACACGAGCGT 988
consensus_6886#1 ------------------------------------------------------------
consensus_6886#0 CGCGAACGAGGTAATGACCGACAGCGGGCCGTACTCGCTCAGGTCCGTGATTTCCAGCGT 1048
consensus_6886#1 ------------------------------------------------------------
consensus_6886#0 GCGCAGCAGCGACTGCAACCGATCGGCACAGAAGCGCAGCGGTTTCCGCTCGATGCACAC 1108
consensus_6886#1 ------------------------------------------------------------
consensus_6886#0 CTTCTGCTGTACGTCGCGCAAAAACCCGGCCGGACTTTCCTGCACCACGTGCTGGACGCG 1168
consensus_6886#1 ------------------------------------------------------------
consensus_6886#0 CAGCCGCGATTTGATGTACTCGATGAAGCGCTTCAGAAAGGACAGGAAGTGATCCGCGTT 1228
consensus_6886#1 ------------------------------------------------------------
consensus_6886#0 GCGTATGTTGCCCGGCACGACCTCCC 1254
consensus_6886#1 --------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||