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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6895#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 926 fasta sequence
[TCTAGTGTTTTAGGCAACAAATAGGACAGCTCAACGATCCAAAGGTCGACGGAAGAGGTCATTTTGCATCTTCTTTGGGGGTACGGCTTCAGTGTGAACCACCTCCTTAGTATCCCAGCTCCCAGCCAATGGTGCCACATCATAGCAGCTGAAACACACCGTCCAGCTGAACCAGCTCCCTCGTTTCTCCATCCCCGTGCGCCAGTGTGTGCGAGAGAGAGAGAGAGGGACGGAGAGCGAACGATAGAGGTTATTGAAAAATGCGCAAAGACAAACGACGTACGTAGTTTAGGTAGTAAAGGCGGGACCGAGGACGCCCGGGCAGCCATTCCAGAAGTAGTAGTTCACTTTTGGCTCTTAGTAAGACTGTGTACAAAACAATCGAGTGTCTACTTGACTTCCTTACTTACAGTGGGGTGTGTGTGTGTGTGTGTGGGTGTTAGGGGTTGACGGCCAGAACGGTTTAAAGAGCAGCCAGTTCGATATTGTACGGTAAATTGTATTTTTGGTTTGTTTTGCTTTAGGTTTTGTAAGATTTACGTGATTGTACGCGTAAGTGTGTGAGGGTTTTGGGTTAGCAAGTATGCAACCTCCTCTTCCACAACCACCACCCTCCCCAATACCCTCCCCCTACCTCCCACCATATCATTACACGATCTGTGATAGACCATGGTGCAAAAAAAACGCGGTGCAGAAGTAGTGGATCCAGTCGGACACGGACTGGAGGAGTTGTTTTGTTTTTCTTCTTCTCTTGTTGTTTGTTGTGTGGTGGTTATTGATTGAAAGGATGTTTTGATTGCAACTGGAAGGAGGTTGAAGTTATGTATTGTAAAAGCCAATGTGCTTAGTTTGGGAAGTGAGTTCAAAGACGAATGCTTAAAACAGGTTCATAGGTGTATGTAATGAATGTAGTAAAAATAAAGCAG]
[+] EMBL CNS09QMH [TCTAGTGTTTTAGGCAACAAATAGGACAGCTCAACGATCCAAAGGTCGACGGAAGAGGTCATTTTGCATCTTCTTTGGGGGTACGGCTTCAGTGTGAACCACCTCCTTAGTATCCCAGCTCCCAGCCAATGGTGCCACATCATAGCAGCTGAAACACACCGTCCAGCTGAACCAGCTCCCTCGTTTCTCCATCCCCGTGCGCCAGTGTGTGCGAGAGAGAGAGAGAGGGACGGAGAGCGAACGATAGAGGTTATTGAAAAATGCGCAAAGACAAACGACGTACGTAGTTTAGGTAGTAAAGGCGGGACCGAGGACGCCCGGGCAGCCATTCCAGAAGTAGTAGTTCACTTTTGGCTCTTAGTAAGACTGTGTACAAAACAATCGAGTGTCTACTTGACTTCCTTACTTACAGTGGGGTGTGTGTGTGTGTGTGTGGGTGTTAGGGGTTGACGGCCAGAACGGTTTAAAGAGCAGCCAGTTCGATATTGTACGGTAAATTGTATTTTTGGTTTGTTTTGCTTTAGGTTTTGTAAGATTTACGTGATTGTACGCGTAAGTGTGTGAGGGTTTTGGGTTAGCAAGTATGCAACCTCCTCTTCCACAACCACCACCCTCCCCAATACCCTCCCCCTACCTCCCACCATATCATTACACGATCTGTGATAGACCATGGTGCAAAAAAAACGCGGTGCAGAAGTAGTGGATCCAGTCGGACACGGACTGGAGGAGTTGTTTTGTTTTTCTTCTTCTCTTGTTGTTTGTTGTGTGGTGGTTATTGATTGAAAGGATGTTTTGATTG ]
[-] EMBL CNS09QMI [ AGCAGTTGAAACACACCGTCCAGCTGAACCAGTTCCCTCGTTTCTCCATCCCCGTGCGCCAGTGTGTGCGAGAGAGAGAGAGAGGGACGGAGAGCGAACGATAGAGGTTATTGAAAAATGCGCAAAGACAAACAACGTACGTAGTTTAGGTAGTAAAGGCGGGACCGAGGACGCCCGGGCAGCCATTCCAGAAGTAGTAGTTCACTTTTGGCTCTTAGTAAGACTGTGTACAAAACAATCGAGTGTCTACTTAACTTCCTAACTTACAGTGGGGTGTGTGTGTGTGTGTGTGGGTGTTAGGGGTTGACGGCCAGAACGGTTTAAAGAGCAGCCAGTTCGATATTGTACGGTAAATTGTATTTTTGGTTTGTTTTGCTTTAGGTTTTGTAAGATTTACGTGATTGTACGCGTAAGTGTGTGAGGGTTTTGGGTTAGCAAGTATGCAACCTCCTCTTCCACAACCACCACCCTCCCCAATACCCTCCCCCTACCTCCCACCATATCATTACACGATCTGTGATAGACCATGGTGCAAAAAAAACGCGGTGCAGAAGTAGTGGATCCAGTCGGACACGGACTGGAGGAGTTGTTTTGTTTTTCTTCTTCTCTTGTTGTTTGTTGTGTGGTGGTTATTGATTGAAAGGATGTTTTGATTGCAACTGGAAGGAGGTTGAAGTTATGTATTGTAAAAGCCAATGTGCTTAGTTTGGGAAGTGAGTTCAAAGACGAATGCTTAAAACAGGTTCATAGGTGTATGTAATGAATGTAGTAAAAATAAAGCAG]
consensusID : consensus_6895#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 755 fasta sequence
[CGGCAACTTTGGAACGGCAAGCAAACTCTGTGGAGCAGCGGCGCCGGTGATATTTTGTGAAGAAATGCAACCTCACACGAACATTGCGTCCTCTTCCGGCACACCGTACGGCACAACGGTGGAACGCAATGGACAGGTAACGAAATCTCGATGATGAAGCTACTGATGATAACTGAAGAACGAACTTAACGCATATCCCGTGGAGAATCCCTGCATCGGGAAGTCGGGGACCTACGAGGCAGCACCGTGCCAAATTCGATAGTCATCAACTCTGGATCTGATCCACCGCTAACACTAAGACACATTTGTGGGTGCGAGAGAGAGAGGGACGGAGAGCGAACGATAGAGGTTATTGAAAAATGCGCAAAGACAAACGACGTACGTAGTTTAGGTAGTAAAGGCGGGACCGAGGGCGCCCGGGCAGCCATTCCAGAAGTAGTAGTTCACTTTTGGCTCTTAGTAAGACTGTGTACAAAACAATCGAGTGTCTACTTGACTTCCTTACTTACAGTG-GG--GTGTGTGT-T--TGTGGGTGTT---A-GGGGTTGACGG-CCAGAACTATTTAAAGAGCAGCCAGTTCGATATTGTACGGTAAATTGTATTTTTGGTTTGTTTTGCTTTAGGTTTTGTAAGATTTACGTGATTGTACGCGTAAGCGTGTAAGCGAGGGTATGGGTCAGCAAGCTTGCAACCACCTCTT-CCGCAACCACCACCCTCCCCAATACCC-TCCCCCTACCTCCCACCATATCGTTACACGATCT]
[+] EMBL BX613319 [CGGCAACTTTGGAACGGCAAGCAAACTCTGTGGAGCAGCGGCGCCGGTGATATTTTGTGAAGAAATGCAACCTCACACGAACATTGCGTCCTCTTCCGGCACACCGTACGGCACAACGGTGGAACGCAATGGACAGGTAACGAAATCTCGATGATGAAGCTACTGATGATAACTGAAGAACGAACTTAACGCATATCCCGTGGAGAATCCCTGCATCGGGAAGTCGGGGACCTACGAGGCAGCACCGTGCCAAATTCGATAGTCATCAACTCTGGATCTGATCCACCGCTAACACTAAGACACATTTGTGGGTGCGAGAGAGAGAGGGACGGAGAGCGAACGATAGAGGTTATTGAAAAATGCGCAAAGACAAACGACGTACGTAGTTTAGGTAGTAAAGGCGGGACCGAGGGCGCCCGGGCAGCCATTCCAGAAGTAGTAGTTCACTTTTGGCTCTTAGTAAGACTGTGTACAAAACAATCGAGTGTCTACTTGACTTCCTTACTTACAGTGTGGT GTGTGTGT G TGTGGGTGTT A GGGGTTGACGG CCAGAACTATTTAAAGAGCAGCCAGTTCGATATTGTACGGTAAATTGTATTTTTGGTTTGTTTTGCTTTAGGTTTTGTAAGATTTACGTGATTGTACGCGTAAGCGTGTAAGCGAGGGTATGGGTCAGCAAGCTTGCAACCACCTCTT CCGCAACCACCACCCTCCCCAATACCC ]
[+] EMBL BX620493 [ AACGGTGGAACGCAATGGACAGGTAACGAAATCTCGATGATGAAGCTACTGATGATAACTGAAAAACGAACTTAACGCATATCCCGTGGAGAATCCCTGCATCGGGAAAT TGGGACCTACGCGGCAGCACCGTGCCAAATTCGATAGTCATCAACTCTGGATCTGATCCACCGCTAACACTAAGACACCTTTGTGTGTGCGAGAGAGAGAGGGACGGAGAGCGAACGATAGAGGTTATTGAAAAATGCGCAAAGACAAACGACGTACGTAGTTTAGGTAGTAAAGGCGGGACCGAGGGCGCCCGGGCAGCCATTCCAGAAGTAGTAGTTCACTTTTGGCTCTTAGTAAGACTGTGTACAAAACAATCGAGTGTCTACTTGACTTCCTTACTTACAGTG GG GTGTGTGT T TGTGGGTTTT G GGGGNTGACGG CCAGTACGGTTTAAAGAGCAGCCAGTTCGATATTGTACGGTAAATTGTGTTTTTGGNTTGTTTTGCTTTAGGTTTTGTAAGATTTACGTGATTGTACGCGTAAGCGTGT GAGGGTATGGGTCAGCAAGTATGCAACCACCTCTT CCACGACCACCACCATCCCCNATACCC TCCCCCTACCTCCCACCATATCGTTACACGATCT]
[+] EMBL BM612511 [ CCG GGAGAATCCCTGCATCGGGAAATCGGGGACCTACGCGGCAGCACCGTGCCAAATTCGATAGTCATCAACTCTGGATCTGATCCACCGCTAACACTAAGACACATTTGTGGGTGCGAGAGAGAGAGGGACGGAGAGCGAACGATAGAGGTTATTGAAAAATGCGCAAAGACAAACGACGTACGTAGTTTAGGTAGTAAAGGCGGGACCGACGGCGCCCGGGCAGCCATTCCAGAAGTAGTAGTTCACTTTTGGCTCTTAGTAAGACTGTGTACAAAACAATCGAGTGTCTACTTGACTTCCTTACTTACAGTG GGGTGTGTGTGT TGGTGTGGGTGTTTTAAGGGGGTTGACGGCCCAGTACGGTTTAAAGAGCAGCCAGTTCGATATTGTACGGTAAATTGTGTTTTTGGTTTGTTTTGCTTTAGGTTTTGTAAGATTTACGTGATTATACGCGTAAGCGTGTAAGCGAGAGTATGGGTCAGCAAGCTTGCAACCTCCTCTTCCCACAACCACCACCCTCCCCAATACCCACCCCCCTACCTCCCACC ]
[+] EMBL BX617241 [ CCCTGCATCGGGAAGTCGGGGACCTACGAGGCAGCACCGTGCCAAATTCGATAGTCATCAACTCTGGATCTGATCCACCGCTAACACTAAGACACATTTGTGGGTGCGAGAGAGAGAGGGACGGAGAGCGAACGATAGAGGTTATTGAAAAATGCGCAAAGACAAACGACGTACGTAGTTTAGGTAGTAAAGGCGGGACCGAGGGCGCCCGGGTAGCCATTCCAGAAGTAGTAGTTCACTTTTGGCTCTTAGTAAGACTGTGTACAAAACAATCGAGTGTCTACTTGACTTCCTTACTTACAGTG GG GTGTGTGTGTG TGTGGGTGTT A GGGGTTGACGG CCAGAACTATTTAAAGAGCAGCCAGTTCGATATTGTACGGTAAATTGTATTTTTGGTTTGTTTTGCTTTAGGTTTTGTAAGATTTACGTGATTGTACGCGTAAGCGTGTAAGCGAGGGTATGGGTCAGCAAGCTTGCAACCACCTCTT CCGCAACCACCACCCTCCCCAATACCC TCCCCCT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6895#0 ------------------------------------------------------------
consensus_6895#1 CGGCAACTTTGGAACGGCAAGCAAACTCTGTGGAGCAGCGGCGCCGGTGATATTTTGTGA 60
consensus_6895#0 ---------------------TCTAGTGTTTTAGGC-AACAAATAGGACAGCTCAACGAT 38
consensus_6895#1 AGAAATGCAACCTCACACGAACATTGCGTCCTCTTCCGGCACACCGTACGGCACAACGGT 120
* * ** * * ** * * ** ** ***** *
consensus_6895#0 CCAAAG--GTCGACGGAAGAGGTCATTTTGC--ATCTTCTTTGGGGGTACGGCTTCAGTG 94
consensus_6895#1 GGAACGCAATGGACAGGTAACGAAATCTCGATGATGAAGCTACTGATGATAACTGAAGAA 180
** * * *** * * * ** * * ** * * * ** **
consensus_6895#0 TGAAC------CACCTCCTT---AGTATCCCAGCTCCCAGCCAATGGTG--CCACATCAT 143
consensus_6895#1 CGAACTTAACGCATATCCCGTGGAGAATCCCTGCATCGGGAAGTCGGGGACCTACGAGGC 240
**** ** *** ** ***** ** * * ** * * **
consensus_6895#0 AGCAGC---TGAAACACACCGTCCAGCTGAACCAGCTCCCTCGTTTCTCCATCCCCGTGC 200
consensus_6895#1 AGCACCGTGCCAAATTCGATAGTCATCAACTCTGGATCTGATCCACCGCTAACACTAAG- 299
**** * *** * ** * * * ** * * * * * *
consensus_6895#0 GCCAGTGTGTGCGAGAGAGAGAGAGAGGGACGGAGAGCGAACGATAGAGGTTATTGAAAA 260
consensus_6895#1 ACACATTTGTGGGTGCGAGAGAGAGAGGGACGGAGAGCGAACGATAGAGGTTATTGAAAA 359
* * **** * * ********************************************
consensus_6895#0 ATGCGCAAAGACAAACGACGTACGTAGTTTAGGTAGTAAAGGCGGGACCGAGGACGCCCG 320
consensus_6895#1 ATGCGCAAAGACAAACGACGTACGTAGTTTAGGTAGTAAAGGCGGGACCGAGGGCGCCCG 419
***************************************************** ******
consensus_6895#0 GGCAGCCATTCCAGAAGTAGTAGTTCACTTTTGGCTCTTAGTAAGACTGTGTACAAAACA 380
consensus_6895#1 GGCAGCCATTCCAGAAGTAGTAGTTCACTTTTGGCTCTTAGTAAGACTGTGTACAAAACA 479
************************************************************
consensus_6895#0 ATCGAGTGTCTACTTGACTTCCTTACTTACAGTGGGGTGTGTGTGTGTGTGTGTGGGTGT 440
consensus_6895#1 ATCGAGTGTCTACTTGACTTCCTTACTTACAGTGGGGTGTGTGTTTGT------GGGTGT 533
******************************************** *** ******
consensus_6895#0 TAGGGGTTGACGGCCAGAACGGTTTAAAGAGCAGCCAGTTCGATATTGTACGGTAAATTG 500
consensus_6895#1 TAGGGGTTGACGGCCAGAACTATTTAAAGAGCAGCCAGTTCGATATTGTACGGTAAATTG 593
******************** **************************************
consensus_6895#0 TATTTTTGGTTTGTTTTGCTTTAGGTTTTGTAAGATTTACGTGATTGTACGCGTAAGTGT 560
consensus_6895#1 TATTTTTGGTTTGTTTTGCTTTAGGTTTTGTAAGATTTACGTGATTGTACGCGTAAGCGT 653
********************************************************* **
consensus_6895#0 GTGAG---GGTTTTGGGTTAGCAAGTATGCAACCTCCTCTTCCACAACCACCACCCTCCC 617
consensus_6895#1 GTAAGCGAGGGTATGGGTCAGCAAGCTTGCAACCACCTCTTCCGCAACCACCACCCTCCC 713
** ** ** * ***** ****** ******* ******** ****************
consensus_6895#0 CAATACCCTCCCCCTACCTCCCACCATATCATTACACGATCTGTGATAGACCATGGTGCA 677
consensus_6895#1 CAATACCCTCCCCCTACCTCCCACCATATCGTTACACGATCT------------------ 755
****************************** ***********
consensus_6895#0 AAAAAAACGCGGTGCAGAAGTAGTGGATCCAGTCGGACACGGACTGGAGGAGTTGTTTTG 737
consensus_6895#1 ------------------------------------------------------------
consensus_6895#0 TTTTTCTTCTTCTCTTGTTGTTTGTTGTGTGGTGGTTATTGATTGAAAGGATGTTTTGAT 797
consensus_6895#1 ------------------------------------------------------------
consensus_6895#0 TGCAACTGGAAGGAGGTTGAAGTTATGTATTGTAAAAGCCAATGTGCTTAGTTTGGGAAG 857
consensus_6895#1 ------------------------------------------------------------
consensus_6895#0 TGAGTTCAAAGACGAATGCTTAAAACAGGTTCATAGGTGTATGTAATGAATGTAGTAAAA 917
consensus_6895#1 ------------------------------------------------------------
consensus_6895#0 ATAAAGCAG 926
consensus_6895#1 ---------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||