cluster # 6899

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Anopheles gambiae
cluster # 6899 cluster # 6899 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6899#0 length = 598 sequences # 4

consensus_6899#1 length = 588 sequences # 2

consensusID : consensus_6899#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 598
fasta sequence

                              [CCGCGGACGCGTGGGGGATTTTTGTTTTTCTTCTTTCTGCTCACATAAGAAACCGCAAACACGTGAAAAGAGGCAGCAGTTTGATTTGTAATTGTTAGTAAAGAATATCGTTTAAAGTAGTCAGTTTGTATCACACATCTATCTTTAATGGACGCGTAATCTCGCGAAGGTTAACTCCCTCTCTCTATTTTTCATCTCAAACCACCGTTAATTCCATCACAAGCAGCTCTTATCAGCTCTTATTACATATTCTTTTTTAATTCGTAACACATACTTATTACTGCACCGCCAATAGTGTCCTATCGTGTGTGCCTTGTAGTAGTTGAAATGTGTGCACAACCGCACACACCTGCCAAATTGTGTAGCCAAAATGCTTTGAAATCAATTGATCGTTTCAT-AAAAAATGTCATAGCATACATTACAAAAAAAGTTACTTAAACAGCTGTTTAATTCGTTTTTGGTTTACGAAATAGTA-TTTCGTTTGTTTCTTTCCGTACGCAAACTCATTGTTCACTGTGTAGTAGATTTGTTACGCGCCGCTATTCCTATACCGACTGTTGTGTACTGTTCAATAAATACTACTATTATCTAAAAAAAA]

[+] EMBL BM604747             [CCGCGGACGCGTGGGGGATTTTTGTTTTTCTTCTTTCTGCTCACATAAGAAACCGCAAACACGTGAAAAGAGGCAGCAGTTTGATTTGTAATTGTTAGTAAAGAATATCGTTTAAAGTAGTCAGTTTGTATCACACATCTATCTTTAATGGACGCGTAATCTCGCGAAGGTTAACTCCCTCTCTCTATTTTTCATCTCAAACCACCGTTAATTCCATCACAAGCAGCTCTTATCAGCTCTTATTACATATTCTTTTTTAATTCGTAACACATACTTATTACTGCACCGCCAATAGTGTCCTATCGTGTGTGCCTTGTAGTAGTTGAAATGTGTGCACAACCGCACACACCTGCCAAATTGTGTAGCCAAAATGCTTTGAAATCAATTGATCGTTTCAT AAAAAATGTCATAGCATACATTACAAAAAAAGTTACTTAAACAGCTGTTTAATTCGTTTTTGGTTTACGAAATAGTA TTTCGTTTGTTTCTTTCCGTACGCAAACTCATTGTTCACTGTGTAGTAGATTTGTTACGCGCCGCTATTCCTATACCGACTGTTGTGTACTGTTCAATAAATACTACTATTATCT        ]
[-] EMBL AGA283936            [                                                                                                                                                                                           TTTTTCATCTCAAACCACCGTTAATTCCATCACAAGCAGCTCTTATCAGCTCTTATTACATATTTCTTTTTAATTCGTAACACATACTTATTACTGCACCGCCAATAGTGTCCTATCGTGTGTGCCTTGTAGTAGTTGAAATGTGTGCACAACCGCACACACCTGCCAAATTGTGTAGCCAAAATGCTTTGAAATCAATTGATCGTTTCAT  AAAAATGTCATAGCATACATTAC AAAAAAGTTACTTAAACAGCTGTTTAATTCGTTTTTGGTTTACGAAATAGTA TTTCGTTTGTTTCTTTCCATACGCAAACTCATTGTTCACTGTGTAGTAGATTTGTTACGCGCCGCTATTCCTATACCGACTGTTGTGTACTGTTCAATAAATACTACTATTATCTAAAAAAAA]
[-] EMBL CNS096OU             [                                                                                                                                                                                                    TCAAACCACCGTTAATTCCATCACAAGCAGCTCTTATCAGCTCTTATTACATATTCTTTTTTAATTCGTAACACATACTTATTACTGCACCGCCAATAGTGTCCTATCGTGTGTGCCTTGTAGTAGTTGAAATGTGTGCACAACCGCACACACCTGCCAAATTGTGTAGCCAAAATGCTTTGAAATCAATTGATCGTTTCAT AAAAAATGTCATAGCATACATTACAAAAAAAGTTACTTAAACAGCTGTTTAATTCGTTTTTGGTTTACGAAATAGTATTTTCGTTTGTTTCTTTCCGTACGCAAACTCATTGTTCACTGTGTAGTAGATTTGTTACGCGCCGCTATTCCTATACCGACT                                          ]
[+] EMBL BM638916             [                                                                                                                                                                                                                                                                                                                                                                       GTGTAGCCAAAATGCTTTGAAATCAATTGATCGTTTCATAAAAAAATGTCATAGCATACATTAC AAAAAAGTTACTTAAACAGCTGTTTAATTCGTTTTTGGTTTACGAAATAGTA TTTCGTTTGTTTCTTTCCGTACGCAAACTCATTGTTCACTGTGTAGTAGATTTGTTACGCGCCGCTATTCCTATACCGACTGTTGTGTACTGTTCAATAAATACTACTATTATCT        ]




>consensus_6899#0
CCGCGGACGCGTGGGGGATTTTTGTTTTTCTTCTTTCTGCTCACATAAGAAACCGCAAAC
ACGTGAAAAGAGGCAGCAGTTTGATTTGTAATTGTTAGTAAAGAATATCGTTTAAAGTAG
TCAGTTTGTATCACACATCTATCTTTAATGGACGCGTAATCTCGCGAAGGTTAACTCCCT
CTCTCTATTTTTCATCTCAAACCACCGTTAATTCCATCACAAGCAGCTCTTATCAGCTCT
TATTACATATTCTTTTTTAATTCGTAACACATACTTATTACTGCACCGCCAATAGTGTCC
TATCGTGTGTGCCTTGTAGTAGTTGAAATGTGTGCACAACCGCACACACCTGCCAAATTG
TGTAGCCAAAATGCTTTGAAATCAATTGATCGTTTCATAAAAAATGTCATAGCATACATT
ACAAAAAAAGTTACTTAAACAGCTGTTTAATTCGTTTTTGGTTTACGAAATAGTATTTCG
TTTGTTTCTTTCCGTACGCAAACTCATTGTTCACTGTGTAGTAGATTTGTTACGCGCCGC
TATTCCTATACCGACTGTTGTGTACTGTTCAATAAATACTACTATTATCTAAAAAAAA

consensusID : consensus_6899#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 588
fasta sequence

                              [TCCGGCTACCGGTGAATGGCGTTAGCGTTGCGCGAGTTAAAAGGGCAATGCTAAAAATGCATGCAAACATCACCTCAATTTTACACAATAACGTACCAAGCGGAATGAACACAGATTGTTTGTCAGGAGCTGTCTGACAACGGTTTTTACCTATCGCAACCAACCACCATCGATTTTACCGATGGGTGGCTTTTTGTTTTTCTTCTTTCTGCTCACACAAGAAACCGCAAACACGTGAAAAGAGGCAGCAGTTTGATTTGTAATTGTTAGCAAAGAATATCGTTTAAAGTAGTCAGTTTGTATCACACATCTATCTTTAATGGACGCGTAATCTCGCGAAGGTTAACTCTCTCTCTCTCTCTCTCTATTTTTCATCTCAAACCACCGTTAATTCCATCACAAGCAGCTCTTATCAGCTCTTATTACATATTTCTTTTTAATTCGTAACACATACTTATTACTGCACCGCCAATAGTGTCCTATCGTGTGTGCCTTGTAGTAGTTGAAATGTGTGCACAACCGCAAACACCTGCCAAATTGTGTAGCCAAAATGCTTTGAAATCAATTGATCGTTTCATAAAAATGTCA]

[-] EMBL CNS0909N             [TCCGGCTACCGGTGAATGGCGTTAGCGTTGCGCGAGTTAAAAGGGCAATGCTAAAAATGCATGCAAACATCACCTCAATTTTACACAATAACGTACCAAGCGGAATGAACACAGATTGTTTGTCAGGAGCTGTCTGACAACGGTTTTTACCTATCGCAACCAACCACCATCGATTTTACCGATGGGTGGCTTTTTGTTTTTCTTCTTTCTGCTCACACAAGAAACCGCAAACACGTGAAAAGAGGCAGCAGTTTGATTTGTAATTGTTAGCAAAGAATATCGTTTAAAGTAGTCAGTTTGTATCACACATCTATCTTTAATGGACGCGTAATCTCGCGAAGGTTAACTCTCTCTCTCTCTCTCTCTATTTTTCATCTCAAACCACCGTTAATTCCATCACAAGCAGCTCTTATCAGCTCTTATTACATATTTCTTTTTAATTCGTAACACATACTTATTACTGCACCGCCAATAGTGTCCTATCGTGTGTGCCTTGTAGTAGTTGAAATGTGTGCACAACCGCAAACACCTGCCAAATTGTGTAGCCAAAATGCTTTGAAATCAATTGATCGTTTCATAAAAATGTCA]
[-] EMBL CNS090X3             [                                                                                                                                                           aaAACCAACCACCATCGATTTTACCGATGGGTGGCTTTTTGTTTTTCTTCTTTCTGCTCACACAAGAAACCGCAAACACGTGAAAAGAGGCAGCAGTTTGATTTGTAATTGTTAGCAAAGAATATCGTTTAAAGTAGTCAGTTTGTATCACACATCTATCTTTAATGGACGCGTAATCTCGCGAAGGTTAACTCTCTCTCTCTCTCTCTCTATTTTTCATCTCAAACCACCGTTAATTCCATCACAAGCAGCTCTTATCAGCTCTTATTACATATTTCTTTTTAATTCGTAACACATACTTATTACTGCACCGCCAATAGTGTCCTATCGTGTGTGCCTTGTAGTAGTTGAAATGTGTGCACAACCGCACACACCTGCCAAATTGTGTAGCCAAAATGCTTTGAAATCAATTGATCGTTTCATAAAAATt   ]




>consensus_6899#1
TCCGGCTACCGGTGAATGGCGTTAGCGTTGCGCGAGTTAAAAGGGCAATGCTAAAAATGC
ATGCAAACATCACCTCAATTTTACACAATAACGTACCAAGCGGAATGAACACAGATTGTT
TGTCAGGAGCTGTCTGACAACGGTTTTTACCTATCGCAACCAACCACCATCGATTTTACC
GATGGGTGGCTTTTTGTTTTTCTTCTTTCTGCTCACACAAGAAACCGCAAACACGTGAAA
AGAGGCAGCAGTTTGATTTGTAATTGTTAGCAAAGAATATCGTTTAAAGTAGTCAGTTTG
TATCACACATCTATCTTTAATGGACGCGTAATCTCGCGAAGGTTAACTCTCTCTCTCTCT
CTCTCTATTTTTCATCTCAAACCACCGTTAATTCCATCACAAGCAGCTCTTATCAGCTCT
TATTACATATTTCTTTTTAATTCGTAACACATACTTATTACTGCACCGCCAATAGTGTCC
TATCGTGTGTGCCTTGTAGTAGTTGAAATGTGTGCACAACCGCAAACACCTGCCAAATTG
TGTAGCCAAAATGCTTTGAAATCAATTGATCGTTTCATAAAAATGTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6899#0      ------------------------------------------------------------
consensus_6899#1      TCCGGCTACCGGTGAATGGCGTTAGCGTTGCGCGAGTTAAAAGGGCAATGCTAAAAATGC 60
                                                                                  

consensus_6899#0      ------------------------------------------------------------
consensus_6899#1      ATGCAAACATCACCTCAATTTTACACAATAACGTACCAAGCGGAATGAACACAGATTGTT 120
                                                                                  

consensus_6899#0      ----------------------------------------------------CCGCGGAC 8
consensus_6899#1      TGTCAGGAGCTGTCTGACAACGGTTTTTACCTATCGCAACCAACCACCATCGATTTTACC 180
                                                                                 *

consensus_6899#0      GCGTGGGGGATTTTTGTTTTTCTTCTTTCTGCTCACATAAGAAACCGCAAACACGTGAAA 68
consensus_6899#1      GATGGGTGGCTTTTTGTTTTTCTTCTTTCTGCTCACACAAGAAACCGCAAACACGTGAAA 240
                      *   ** ** *************************** **********************

consensus_6899#0      AGAGGCAGCAGTTTGATTTGTAATTGTTAGTAAAGAATATCGTTTAAAGTAGTCAGTTTG 128
consensus_6899#1      AGAGGCAGCAGTTTGATTTGTAATTGTTAGCAAAGAATATCGTTTAAAGTAGTCAGTTTG 300
                      ****************************** *****************************

consensus_6899#0      TATCACACATCTATCTTTAATGGACGCGTAATCTCGCGAAGGTTAACTCCCTCTCTCT-- 186
consensus_6899#1      TATCACACATCTATCTTTAATGGACGCGTAATCTCGCGAAGGTTAACTCTCTCTCTCTCT 360
                      ************************************************* ********  

consensus_6899#0      ------ATTTTTCATCTCAAACCACCGTTAATTCCATCACAAGCAGCTCTTATCAGCTCT 240
consensus_6899#1      CTCTCTATTTTTCATCTCAAACCACCGTTAATTCCATCACAAGCAGCTCTTATCAGCTCT 420
                            ******************************************************

consensus_6899#0      TATTACATATTCTTTTTTAATTCGTAACACATACTTATTACTGCACCGCCAATAGTGTCC 300
consensus_6899#1      TATTACATATTTCTTTTTAATTCGTAACACATACTTATTACTGCACCGCCAATAGTGTCC 480
                      ***********  ***********************************************

consensus_6899#0      TATCGTGTGTGCCTTGTAGTAGTTGAAATGTGTGCACAACCGCACACACCTGCCAAATTG 360
consensus_6899#1      TATCGTGTGTGCCTTGTAGTAGTTGAAATGTGTGCACAACCGCAAACACCTGCCAAATTG 540
                      ******************************************** ***************

consensus_6899#0      TGTAGCCAAAATGCTTTGAAATCAATTGATCGTTTCATAAAAAATGTCATAGCATACATT 420
consensus_6899#1      TGTAGCCAAAATGCTTTGAAATCAATTGATCGTTTCATAAAAA-TGTCA----------- 588
                      ******************************************* *****           

consensus_6899#0      ACAAAAAAAGTTACTTAAACAGCTGTTTAATTCGTTTTTGGTTTACGAAATAGTATTTCG 480
consensus_6899#1      ------------------------------------------------------------
                                                                                  

consensus_6899#0      TTTGTTTCTTTCCGTACGCAAACTCATTGTTCACTGTGTAGTAGATTTGTTACGCGCCGC 540
consensus_6899#1      ------------------------------------------------------------
                                                                                  

consensus_6899#0      TATTCCTATACCGACTGTTGTGTACTGTTCAATAAATACTACTATTATCTAAAAAAAA 598
consensus_6899#1      ----------------------------------------------------------