|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6905#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1254 fasta sequence
[CCGCATGGATTCGTGCCAAAAAAGTCGACTACCACGAACCTGGTTGAATTTGTAACCTATTGCACTAGTCAAATTGATGCCGGAGCTCAAGTCGATGCAATTTATACAGATCTAAAAGCAGCATTCGACTCTCTTCCGCACGCAATTCTTCTCGCTAAACTCGATAAGCTAGGAGTTCCCAGCCCGCTCGTACAGTGGCTTAAGTCCTATCTAATAAATCGCACATACATCGTTAAAATTGAAAAGCACATGTCCAAAGAAATAGTCAGCAGCTCGGGTGTGCCACAAGGAAGCAACATTGGCCCGCTTCTCTTCATATTGTTTATCAACGATGTTACCCTCGCTTTACCTTCCGACAGTATCAGTCTGTTTGCCGACGACGCAAAAATTTTTGCGCCTATTCACAACACAGGTGATTGTACATTCCTGCAAGACTGCATCGAAATTTTCTGTTCGTGGTGCAAGCGTAATGGACTGACTATCTGCATCGAGAAATGCTACTGTGTGTCTTTTAGTCGATGCAGGAGCCCAGTGACTGGGACCTACTTCATGGACGGCACTGCAGTTAATCGACAGAAACATGCCAAAGACCTGGGCGTTCTGCTTGACTCTAGTTTGAACTTTAAACAGCATATCGATAACGTTGTAGCCAGAGGAAATTAATTACTTGGCGTGGTTATCCGGACAACTAATGAATTCCGCAACCAACCATGTGCATCAAATCTGTCTACATCTGTATC-GTTCGTTCGGTTCTGGAATATTCGTGCGTAGTCTGGAGCCCAACTACTGCTTCTTCAATTGCTCGACTTGAGGCGATTCAACGTAAACTCACGCGATACGCCCTACACCTACTTCCCTGACAGGATCGCAATAATCTTCCTCCGTATGCTGCGCGGTGCCGTCTTCTAGGCCTTGAACCTCTTTCGGTTAGAAGACGCAATGCACAGTGTTCTTTCATCGCTGGATTGCTAAATGGCTCTATCGACTCATCGCCTTTGTTGCATCGAGTCGATATCTATCCGTTCCAGCGCTGGTCGGTCTGACCCTATGTTCCGCATGTCGGCTGTCTTCAATACTGTCTCGGATTGCTTCGACTTCGACATCTCGACTCAGTGCTTCAAGGAACGTCTCCGGCTTTTGCCGTGGCCGCAGTGAATTGCGATGCAAATCTTGGTTTTGTTATGTTTTTTTTTAATGAACTGTTACATCTTAATTAGGCCATACGGCCCGTTGAAGATTAAATAAATAATAATA]
[+] EMBL BM656482 [CCGCATGGATTCGTGCCAAAAAAGTCGACTACCACGAACCTGGTTGAATTTGTAACCTATTGCACTAGTCAAATTGATGCCGGAGCTCAAGTCGATGCAATTTATACAGATCTAAAAGCAGCATTCGACTCTCTTCCGCACGCAATTCTTCTCGCTAAACTCGATAAGCTAGGAGTTCCCAGCCCGCTCGTACAGTGGCTTAAGTCCTATCTAATAAATCGCACATACATCGTTAAAATTGAAAAGCACATGTCCAAAGAAATAGTCAGCAGCTCGGGTGTGCCACAAGGAAGCAACATTGGCCCGCTTCTCTTCATATTGTTTATCAACGATGTTACCCTCGCTTTACCTTCCGACAGTATCAGTCTGTTTGCCGACGACGCAAAAATTTTTGCGCCTATTCACAACACAGGTGATTGTACATTCCTGCAAGACTGCATCGAAATTTTCTGTTCGTGGTGCAAGCGTAATGGACTGACTATCTGCATCGAGAAATGCTACTGTGTGTCTTTTAGTCGATGCAGGAGCCCAGTGACTGGGACCTACTTCATGGACGGCACTGCAGTTAATCGACAGAAACATGCCAAAGACCTGGGCGTTCTGCTTGACTCTAGTTTGAACTTTAAACAGCATATCGATGACGTTGTAGCCAGAGGAAATCAATTACTTGGCGTGGTTAT ]
[+] EMBL BM599890 [ ccgCGGAGCTCAAGTCGATGCAATTTATACCGATCTAAAAGCAGCATTCGACTCTCTTCCGCACGCAATTCTTCTCGCTAAACTCGATAAGCTAGGAGTTCCCAGCCCGCTCGTACAGTGGCTTAAGTCGTACCTAATTAATCGCACATACATCGTGAAAATTGATAAGCACATGTCCAAAGAAATAGTCAGCAGCTCGGGTGTGCCACAAGGAAGCAACATTGGCCCGCTTCTCTTCATATTGTTTATCAACGATGTTACCCTCGCTTTACCTCCCGACAGTATCAGTCTGTTTGCCGACGACGCAAAAATTTTTGCGCCTATTAACAACACAGGTGATTGTACATTCCTGCAAGACTGCATCGAAATTTTCTGTTCGTGGTGCAAGCGTAATGGACTGACTATCTGCATCGAGAAATGCTACTGTGTGTCTTTTAGTCGATGCAGGAGCCCAGTGACTGGGACCTACTTCATGGACGGCACTGCAGTTAATCGACAGAATCATGCCAAAGACCTGGGCGTTCTGCTTGACTCTAGTTTGAACTTTAAACAGCATATCGATGACGTTGTAGCCAGAGGAAATCAATTACTTGGCGTGGTTATCCGGACAACTAATGAATTCCGCAACC CCATGTGCATCAAAGCTGTGTACAACTGTATCAGTTCGTTCGGTTCTGGAATATTC ]
[+] EMBL BX614189 [ TCTGCTTGACTCTAGTTTGAACTTTAAACAGCATATCGATAACGTTGTAGCCAGAGGAAATTAATTACTTGGCGTGGTTATCCGGACAACTAATGCATTCCGCAACCAACCATGTGCATCAAATCTGTCTACATCTGTATC GTTCGTTCGGTTCTGGAATATTCGTGCGTAGTCTGGAGCCCAACTACTGCTTCTTCAATTGCTCGACTTGAGGCGATTCAACGTAAACTCACGCGATACGCCCTACACCTACTTCCCTGACAGGATCGCAATAATCTTCCTCCGTATGCTGCGCGGTGCCGTCTTCTAGGCCTTGAACCTCTTTCGGTTAGAAGACGCAATGCACAGTGTTCTTTCATCGCTGGATTGCTAAATGGCTCTATCGACTCATCGCCTTTGTTGCATCGAGTCGATATCTATCCGTTCCAGCGCTGGTCGGTCTGACCCTATGTTCCGCATGTCGGCTGTCTTCAATACTGT ]
[+] EMBL BX611826 [ ACTCTAGTGTGAACTTTAAACAGCATATCGATAACGTTGTAGCCAGAGGAAATTAATTACTTGGCGTGGTTATCCGGACAACTAATGAATTCCGCAACCAACCATGTGCATCAAATCTGTCTACATCTGTATC GTTCGTTCGGTTCTGGAATATTCGTGCGTAGTCTGGAGCCCAACTACTGCTTCTTCAATTGCTCGACTTGAGGCGATTCAACGTAAACTCACGCGATACGCCCTACACCTACTTCCCTGACAGGATCGCAATAATCTTCCTCCGTATGCTGCGCGGTGCCGTCTTCTAGGCCTTGAACCTCTTTCGGTTAGAAGACGCAATGCACAGTGTTCTTTCATCGCTGGATTGCTAAATGGCTCTATCGACTCATCGCCTTTGTTGCATCGAGTCGATATCTATCCGTTCCAGCGCTGGTCGGTCTGACCCTATGTTCCGCATGTCGGCTGTCTTCAATACTGTCTCGGATTGCTTCGACTTCGACATCTCGACTCAGTGCTTCAAGGAACGTCTCCGGCTTTTGCCGTGGCCGCAGTGAATTGCGATGCAAATCTTGGTTTTGTTATGTTTTTTTTTAATGAACTGTTACATCTTAATTAGGCCATACGGCCCGTTGAAGATTAAATAAATAATAATA]
[+] EMBL BX612031 [ ACTCTAGTTTGAACTTTAAACAGCATATCGATAACGTTGTAGCCAGAGGAAATTAATTACTTGGCGTGGTTATCCGGACAACTAATGAATTCCGCAACCAACCATGTGCATCAAATCTGTCTACATCTGTATC GTTCGTTCGGTTCTGGAATATTCGTGCGTAGTCTGGAGCCCAACTACTGCTTCTTCAATTGCTCGACTTGAGGCGATTCAACGTAAACTCACGCGATACGCCCTACACCTACTTCCCTGACAGGATCGCAATAATCTTCCTCCGTATGCTGCGCGGTGCCGTCTTCTAGGCCTTGAACCTCTTTCGGTTAGAAGACGCAATGCACAGTGTTCTTTCATCGCTGGATTGCTAAATGGCTCTATCGACTCATCGCCTTTGTTGCATCGAGTCGATATCTATCCGTTCCAGCGCTGGTCGGTCTGACCCTATGTTCCGCATGTCGGCTGTCTTCAATACTGTCTCGGATTGCTTCGACTTCGACATCTCGACTCAGTGCTTCAAGGAACGTCTCCGGCTTTTGCCGTGGCCGCAGTGAATTGCGATGCAAATCTTGGTTTTGTTATGTTTTTTTTTAATGAACTGTTACATCTTAATTAGGCCATACGGCCCGTTGAAGATTAA ]
consensusID : consensus_6905#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 684 fasta sequence
[GTTAGTGGGGTAGCCACCCAGTGGAGCGTTCCTCGTTTTGATAGCTTTATGCTTCCCTCTGTACTGCTATATCGACTTCATGGACGGCACTGCAGTTAATCGACAAAATCATGCCAAAGACCTGGGCGTTCTGCTTGACTCAATTACTTGGCGTGGTTATCCGGACAACTAATGAATTCCGCAACCCCATGTGCATCAAAGCTATCTACAACTGTATCGTTCGTTCGGTTCTGGAATATTCGTGCGTAGTCTGGAGCCCAACTACTGCTTCTTCAATTGCTCGACTTGAGGCGATTCAACGTAATCTCACGCGATATGCCCTACGTTTACTTTCCTGGCAGGATCGCAATAATCTTCCTCCGTATGCTGCGCGGTGCCGTCTTCTAGGCCTTGAACCTCTTTCGGTTAGAAGACGCAATGCACAGTGTTCTTTCATCGCTGGATTGCTAAATGGCTCTATCGACTCATCGCCTTTGTTGCATGGAGTCGACATCTATGCACCATCTCGAACACTTAGGTGTAGAGAAACTCGACGGCTCGCTCAACCCCGTTCCAGCGCTGGTCGGTCTGACCCTATGTTCCGCATGTCGGCTGTCTTCAATACTGTCTCGGACTGCTTCGATTTCGACATCTCGACTCAGTGCTTCAAAGAACGTCTCCGGCTTTTGCCGTGGCCGCAGTGAA]
[-] EMBL BX627466 [GTTAGTGGGGTAGCCACCCAGTGGAGCGTTCCTCGTTTTGATAGCTTTATGCTTCCCTCTGTACTGCTATATCGACTTCATGGACGGCACTGCAGTTAATCGACAAAATCATGCCAAAGACCTGGGCGTTCTGCTTGACTCAATTACTTGGCGTGGTTATCCGGACAACTAATGAATTCCGCAACCCCATGTGCATCAAAGCTATCTACAACTGTATCGTTCGTTCGGTTCTGGAATATTCGTGCGTAGTCTGGAGCCCAACTACTGCTTCTTCAATTGCTCGACTTGAGGCGATTCAACGTAATCTCACGCGATATGCCCTACGTTTACTTTCCTGGCAGGATCGCAATAATCTTCCTCCGTATGCTGCGCGGTGCCGTCTTCTAGGCCTTGAACCTCTTTCGGTTAGAAGACGCAATGCACAGTGTTCTTTCATCGCTGGATTGCTAAATGGCTCTATCGACTCATCGCCTTTGTTGCATGGAGTCGACATCTATGCACCATCTCGAACACTTAGGTGTAGAGAAACTCGACGGCTCGCTCAACCCCGTTCCAGCGCTGGTCGGTCTGACCCTATGTTCCGCATGTCGGCTGTCTTCAATACTGTCTCGGACTGCTTCGATTTCGACATCTCGACTCAGTGCTTCAAAGAACGTCTCCGGCTTTTGCCGTGGCCGCAGTGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6905#0 CCGCATGGATTCGTGCCAAAAAAGTCGACTACCACGAACCTGGTTGAATTTGTAACCTAT 60
consensus_6905#1 ------------------------------------------------------------
consensus_6905#0 TGCACTAGTCAAATTGATGCCGGAGCTCAAGTCGATGCAATTTATACAGATCTAAAAGCA 120
consensus_6905#1 ------------------------------------------------------------
consensus_6905#0 GCATTCGACTCTCTTCCGCACGCAATTCTTCTCGCTAAACTCGATAAGCTAGGAGTTCCC 180
consensus_6905#1 ------------------------------------------------------------
consensus_6905#0 AGCCCGCTCGTACAGTGGCTTAAGTCCTATCTAATAAATCGCACATACATCGTTAAAATT 240
consensus_6905#1 ------------------------------------------------------------
consensus_6905#0 GAAAAGCACATGTCCAAAGAAATAGTCAGCAGCTCGGGTGTGCCACAAGGAAGCAACATT 300
consensus_6905#1 ------------------------------------------------------------
consensus_6905#0 GGCCCGCTTCTCTTCATATTGTTTATCAACGATGTTACCCTCGCTTTACCTTCCGACAGT 360
consensus_6905#1 ------------------------------------------------------------
consensus_6905#0 ATCAGTCTGTTTGCCGACGACGCAAAAATTTTTGCGCCTATTCACAACACAGGTGATTGT 420
consensus_6905#1 ------------------------------------------------------------
consensus_6905#0 ACATTCCTGCAAGACTGCATCGAAATTTTCTGTTCGTGGTGCAAGCGTAATGGACTGACT 480
consensus_6905#1 ---------------------------------------------GTTAGTGGGGTAGCC 15
** *** * *
consensus_6905#0 ATCTGCATCGAGAAATGCTACTGTGTGTCTTTTAGTCGATGCAGGAGCCCAGTGACTGGG 540
consensus_6905#1 ACCCA----GTGGAGCGTTCCT-CGTTTTGATAGCTTTATGCTTCCCTCTGTACTGCTAT 70
* * * * * * * ** ** * * * **** *
consensus_6905#0 ACCTACTTCATGGACGGCACTGCAGTTAATCGACAGAAACATGCCAAAGACCTGGGCGTT 600
consensus_6905#1 ATCGACTTCATGGACGGCACTGCAGTTAATCGACAAAATCATGCCAAAGACCTGGGCGTT 130
* * ******************************* ** *********************
consensus_6905#0 CTGCTTGACTCTAGTTTGAACTTTAAACAGCATATCGATAACGTTGTAGCCAGAGGAAAT 660
consensus_6905#1 CTGCTTGACTC------------------------------------------------- 141
***********
consensus_6905#0 TAATTACTTGGCGTGGTTATCCGGACAACTAATGAATTCCGCAACCAACCATGTGCATCA 720
consensus_6905#1 -AATTACTTGGCGTGGTTATCCGGACAACTAATGAATTCCGCAACC--CCATGTGCATCA 198
********************************************* ************
consensus_6905#0 AATCTGTCTACATCTGTATCGTTCGTTCGGTTCTGGAATATTCGTGCGTAGTCTGGAGCC 780
consensus_6905#1 AAGCTATCTACAACTGTATCGTTCGTTCGGTTCTGGAATATTCGTGCGTAGTCTGGAGCC 258
** ** ****** ***********************************************
consensus_6905#0 CAACTACTGCTTCTTCAATTGCTCGACTTGAGGCGATTCAACGTAAACTCACGCGATACG 840
consensus_6905#1 CAACTACTGCTTCTTCAATTGCTCGACTTGAGGCGATTCAACGTAATCTCACGCGATATG 318
********************************************** *********** *
consensus_6905#0 CCCTACACCTACTTCCCTGACAGGATCGCAATAATCTTCCTCCGTATGCTGCGCGGTGCC 900
consensus_6905#1 CCCTACGTTTACTTTCCTGGCAGGATCGCAATAATCTTCCTCCGTATGCTGCGCGGTGCC 378
****** ***** **** ****************************************
consensus_6905#0 GTCTTCTAGGCCTTGAACCTCTTTCGGTTAGAAGACGCAATGCACAGTGTTCTTTCATCG 960
consensus_6905#1 GTCTTCTAGGCCTTGAACCTCTTTCGGTTAGAAGACGCAATGCACAGTGTTCTTTCATCG 438
************************************************************
consensus_6905#0 CTGGATTGCTAAATGGCTCTATCGACTCATCGCCTTTGTTGCATCGAGTCGATATCTAT- 1019
consensus_6905#1 CTGGATTGCTAAATGGCTCTATCGACTCATCGCCTTTGTTGCATGGAGTCGACATCTATG 498
******************************************** ******* ******
consensus_6905#0 -------------------------------------------------CCGTTCCAGCG 1030
consensus_6905#1 CACCATCTCGAACACTTAGGTGTAGAGAAACTCGACGGCTCGCTCAACCCCGTTCCAGCG 558
***********
consensus_6905#0 CTGGTCGGTCTGACCCTATGTTCCGCATGTCGGCTGTCTTCAATACTGTCTCGGATTGCT 1090
consensus_6905#1 CTGGTCGGTCTGACCCTATGTTCCGCATGTCGGCTGTCTTCAATACTGTCTCGGACTGCT 618
******************************************************* ****
consensus_6905#0 TCGACTTCGACATCTCGACTCAGTGCTTCAAGGAACGTCTCCGGCTTTTGCCGTGGCCGC 1150
consensus_6905#1 TCGATTTCGACATCTCGACTCAGTGCTTCAAAGAACGTCTCCGGCTTTTGCCGTGGCCGC 678
**** ************************** ****************************
consensus_6905#0 AGTGAATTGCGATGCAAATCTTGGTTTTGTTATGTTTTTTTTTAATGAACTGTTACATCT 1210
consensus_6905#1 AGTGAA------------------------------------------------------ 684
******
consensus_6905#0 TAATTAGGCCATACGGCCCGTTGAAGATTAAATAAATAATAATA 1254
consensus_6905#1 --------------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||