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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6909#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1022 fasta sequence
[ATATGCATTACAGTTTGCATTAATCTGTATTTTAAACTCAAATGGATCATCGCAGCTTTGCTTTTCTCTCGGGATTTAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGGCTGCAGACCCATGCAGGAGCAACCTTTTTGCAATGGAGTTTGCATTTGCAAGACAATCAAGATAATCTTTGCTATTAACACATTCGGCTTTGGGTTAAATTATTCACTTGTTTTGTTTTGTTCTTTTTTTTATATAGAATCTGAGTAGTAGATAAAGTTTACAATAAGGGGGCTTTTTCTTTCAATCTCTCTCTTTCTCTCTCTCTCACACATATTTTCCAAGAAACTTATGCCCTTATACCACATTCATGTTCAGCTTCGTTCACTATTTACCAAACCAGTAATTGAAGTAGTTGAAGAACACTTTCATAATGTTGGGTGTGTTTTGCATGTATGTATGTGTGTATGGTGTTTAGTAGAGTGTATAGATTGTAATAGTAGCTCCTTCCATGTAAACGCTCGTATCGTCTCTAAGTAAGGGAATGGAAAATTTCATTTCCCAACAAATTATTACACTTTATTTTCTACCGTTTTCTCTCTTTCTCTCTCTTTCGTTTTCTTATGGATTGCGCCTACAAATGCTCCACGCTACTTGTCCAGTTCAAAGTTTTATCCGCAAACCAGGTCCCGGTAATGGTTACCGCGATCGGACAAATCTACGTTCCAAAAAATCTACAACACGAAACCAAACCACACGCGATCGTCTCGCAGGTTTGCGTTCGCTTCTTCCACACAACACAACGCACTGCACTGGGGCCGGTCGAATGCAGGGGAGCATTAAACCCATCGACCATCAACGACCCAACAGTGCTGTGAATTGTGGTCACAAATTTTACAAACAACATAACAGCGTAACAAGTTAAGGGTTAAAGGTTATACAGTGGAAACATATACACATAAAGATAAAAGGGGAAGAATCGTTCTGCATTGTCCAGTGCTTAAGGTTAAAAAAGAAAAACACGATGTCGCG]
[+] EMBL BX611605 [ATATGCATTACAGTTTGCATTAATCTGTATTTTAAACTCAAATGGATCATCGCAGCTTTGCTTTTCTCTCGGGATTTAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGGCTGCAGACCCATGCAGGAGCAACCTTTTTGCAATGGAGTTTGCATTTGCAAGACAATCAAGATAATCTTTGCTATTAACACATTCGGCTTTGGGTTAAATTATTCACTTGTTTTGTTTTGTTCTTTTTTTTATATAGAATCTGAGTAGTAGATAAAGTTTACAATAAGGGGGCTTTTTCTTTCAATCTCTCTCTTTCTCTCTCTCT CTCATATTTTCCAAGAAACTTATGCACTTATACCACATTCATGTTCAGCTTCGTTTACTATTTACCAAACCAGTAATTGAAGTA ]
[-] EMBL BX611363 [ TCTCTCTCTCTCTCTTTGGGCTGCAGACCCATGCAGGTGCAACCTTTTTGCAATGGAGTTTGCATTTGCAAGACAATCAAGACAATCTTTGCTATTAACACATTCGGCTTTGGGTTAAATTATTCACTTGTTTTGTTTTGTTCTTTTTT TATAGAATCTGAGTAGTAGATAAAGTTTACAATAAGGGGGCTTTTTCTTTCAATCTCTCTCTTTCTCTCTCTCTCACACATATTTTCCAAGAAACTTATGCCCTTATACCACATTCATGTTCAGCTTCGTTCACTATTTACCAAACCAGTAATTGAAGTAGTTGAAGAACACTTTCATAATGTTGGGTGTGTTTTGCATGTATGTATGTGTGTATGGTGTTTAGTAGAGTGTATAGATTGTAATAGTAGCTCCTTCCATGTAAACGCTCGTATCGTCTCTAAGTAAGGGAATGGAAAATTTCATTTCCCAACAAATTATTACACTTTATTTTCTACCGTTTTCTCTCTTTCTCTCTCTTTCGTTTTCTTATGGATTGCGCCTACAAATGCTCCACGCTACTTGTCCAGTTCAAAGTTTTATCCGCAAACCAGGTCCCGGTAATGGTTACCGCGATCGGA ]
[-] EMBL BX628598 [ GTAGTAGATAAAGTTTACAATAAGGGGGCTTTTTCTTTCAATCTCTCTCTTTCTCTCTCTCTCACACATATTTTCCAAGAAACTTATGCCCTTATACCACATTCATGTTCAGCTTCGTTCACTATTTACCAAACCAGTAATTGAAGTAGTTGAAGAACACTTTCATAATGTTGGGTGTGTTTTGCATGTATGTATGTGTGTATGGTGTTTAGTAGAGTGTATAGATTGTAATCGTAGCTCCTTCCATGTAAACGCTCGTATCGTCTCTAAGTAAGGGAATGGAAAATTTCATTTCCCAACAAATTATTACACTTTATTTTCTACCGTTTTCTCTCTTTCTCTCTCTTTCGTTTTCTTATGGATTGCGCCTACAAATGCTCCACGCTACTTGTCCAGTTCAAAGTTTTATCCGCAAACCAGGTCCCGGTAATGGTTACCGCGATCGGACAAATCTACGTTCCAAAAAATCTACAACACGAAACCAAACCACACGCGATCGTCTCGCAGGTTTGCGTTCGCTTCTTCCACACAACACAACGCACTGCACTGGGGCCGGTCGAATGCAGGGGAGCATTAAACCCATCGACCATCAACGACCCAACAGTGCTGTGAATTGTGGTCACAAATTTTACAAACAACATAACAGCGTAACAAGTTAAGGGTTAAAGGTTATACAGTGGAAACATATACACATAAAGATAAAAGGGGAAGAATCGTTCTGCATTGTCCAGTGCTTAAGGTTAAAAAAGAAAAACACGATGTCGCG]
consensusID : consensus_6909#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 828 fasta sequence
[TCGTGTGGTGTNTGCTGTTGTTCGTTGTCGCACATTGTGTTNCNCAGAGGGAACTTGANGGCCCGTTTATGAGCNCGACAGTTNNAGGGNCCAGGCGATTGCGTGCCACTGAATTTTCCCCGGACCCGTTATTTGGGAAGTTACGTTNGAGAGGCACCAGCCGTTNTCGCAGTAATGTTTGGGGTTGTGCTTTTGTTGCCAATGNTAATTGGTATGTTGTATTGGTGCGTTTAGTAGAGTGTATAGATTGTGAATCGTAGCGTCCTGTCCATGTATACGCTCGTATCGTCTCTAAGTAAGGGGAATGGAAAATTTCATTTCNCCGACATTATGTACACAGTTATGGTTCNACCGTGTTTGCTCTCTGTGTCTCTCTGCGTGTTCGTTTTCTTATGGATTGCGCCTACAAATGCTCCACGCTACTTGTCCAGTTCAAAGTTTTATCCGCAAACCAGGTCCCGGTAATGGTTACCGCGATCGGTACAAATCTACGTTCCAAAAGAATCTACAACACGAAACCAAACCACACGCGATCGTCTCGCAGGTTTGCGTTCGCTTCTTCCACACAACACAACGCACTGCACTGGGCCGGTCGAATGCAGGGGAGCATTAAACCCATCGACCATCAACGACCCAACAGTGCTGTGAATTGTGGTCACAAATTTTACAAACAACATAACAGCGTAACAAGTTAA--GGGTTAAAGGTTATACAGT-GGAAACATATACACATAAAGATAAAAGGGGAAGAATCGTTCTGCATTGTCCAGTGCTTAAGGTTAAAAAAGAAAAACACGATGTCGCGTTGCGAATGTCANCCTCGGGCGATTC]
[-] EMBL AL931611 [TCGTGTGGTGTNTGCTGTTGTTCGTTGTCGCACATTGTGTTNCNCAGAGGGAACTTGANGGCCCGTTTATGAGCNCGACAGTTNNAGGGNCCAGGCGATTGCGTGCCACTGAATTTTCCCCGGACCCGTTATTTGGGAAGTTACGTTNGAGAGGCACCAGCCGTTNTCGCAGTAATGTTTGGGGTTGTGCTTTTGTTGCCAATGNTAATTGGTATGTTGTATTGGTGCGTTTAGTAGAGTGTATAGATTGTGAATCGTAGCGTCCTGTCCATGTATACGCTCGTATCGTCTCTAAGTAAGGGGAATGGAAAATTTCATTTCNCCGACATTATGTACACAGTTATGGTTCNACCGTGTTTGCTCTCTGTGTCTCTCTGCGTGTTCGTTTTCTTATGGATTGCGCCTACAAATGCTCCACGCTACTTGTCCAGTTCAAAGTTTTATCCGCAAACCAGGTCCCGGTAATGGTTACCGCGATCGGTACAAATCTACGTTCCAAAAGAATCTACAACACGAAACCAAACCACACGCGATCGTCTCGCAGGTTTGCGTTCGCTTCTTCCACACAACACAACGCACTGCACTGGGCCGGTCGAATGCAGGGGAGCATTAAACCCATCGACCATCAACGACCCAACAGTGCTGTGAATTGTGGTCACAAATTTTACAAACAACATAACAGCGTAACAAGTTAA GGGTTAAAGGTTATACAGT GGAAACATATACACATAAAGATAAAAGGGGAAGAATCGTTCTGCATTGTCCAGTGCTTAAGGTTAAAAAAGAAAAACACGATGTCGCGTTGCGAATGTCANCCTCGGGCGATTC]
[-] EMBL BX628732 [ GTACCAAGTTAAAGGGGTTAAAGGTTATACAGTGGGAAACATATACACATAAAGATAAAAGGGGAAGAATCGTTCTGCATTGTCCAGTGCTTAAGGTTAAAAAAGAAAAACACGATGTCGCGTT ]
consensusID : consensus_6909#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 607 fasta sequence
[CACGAGATATTTGTCCATGAAACTTATGCACTTATGACCACATNCATGTTGAGTTTCGTTCACGTATGTTACCGNNGACCGAGTAATTGAAGTAGNTTGAAGAACACTTTCATAATGTTGGTTGTGTTTTGTGCATGTATGTGTGTGTGTATGGTGTTTTAGTAGTGTTTATAGATTGTATTTATAGCTCCTTCCATGTAAACGCTCGTATCGTCTCCTAAGTAAGGGAATGGAAAATTTCATTTCCCAACGAATTATTACACGTTTATTCTCTACCGTTTTCTCTTTCTCTCTTTCGTTTTCTTACGGATTGCGCTTACAAATGCTCCACGCTACTTGTCCACTTTCAAGTTTTATCAGCAAACCAGGTCCCGGTAATGGTTACCCGCGATCGGACAAATCTACGTTCCAAAAAATCTACAAACAAGAAACCAAACCACACGCGATCCTCTCGCAGGTTGGCGTTCGCTTCTTTAACACAACTCAACGCACTGCTCTGGGCCCGTCCGAATGTGGGTAGCATTAAACCCGACCATCGACGACCCAACAGTGCGGATGAATTGTGTCACAAGATTTTACAAACAACATAACATNAACCTCGTGCGAT]
[-] EMBL AL696376 [CACGAGATATTTGTCCATGAAACTTATGCACTTATGACCACATNCATGTTGAGTTTCGTTCACGTATGTTACCGNNGACCGAGTAATTGAAGTAGNTTGAAGAACACTTTCATAATGTTGGTTGTGTTTTGTGCATGTATGTGTGTGTGTATGGTGTTTTAGTAGTGTTTATAGATTGTATTTATAGCTCCTTCCATGTAAACGCTCGTATCGTCTCCTAAGTAAGGGAATGGAAAATTTCATTTCCCAACGAATTATTACACGTTTATTCTCTACCGTTTTCTCTTTCTCTCTTTCGTTTTCTTACGGATTGCGCTTACAAATGCTCCACGCTACTTGTCCACTTTCAAGTTTTATCAGCAAACCAGGTCCCGGTAATGGTTACCCGCGATCGGACAAATCTACGTTCCAAAAAATCTACAAACAAGAAACCAAACCACACGCGATCCTCTCGCAGGTTGGCGTTCGCTTCTTTAACACAACTCAACGCACTGCTCTGGGCCCGTCCGAATGTGGGTAGCATTAAACCCGACCATCGACGACCCAACAGTGCGGATGAATTGTGTCACAAGATTTTACAAACAACATAACATNAACCTCGTGCGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6909#0 ATATGCATTACAGTTTGCATTAATCTGTATTTTAAACTCAAATGGATCATCGCAGCTTTG 60
consensus_6909#2 ------------------------------------------------------------
consensus_6909#1 ------------------------------------------------------------
consensus_6909#0 CTTTTCTCTCGGGATTTAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGGCTGCAGAC 120
consensus_6909#2 ------------------------------------------------------------
consensus_6909#1 ------------------------------------------------------------
consensus_6909#0 CCATGCAGGAGCAACCTTTTTGCAATGGAGTTTGCATTTGCAAGACAATCAAGATAATCT 180
consensus_6909#2 ------------------------------------------------------------
consensus_6909#1 ------------------------------------------------------------
consensus_6909#0 TTGCTATTAACACATTCGGCTTTGGGTTAAATTATTCACTTGTTTTGTTTTGTTCTTTTT 240
consensus_6909#2 ------------------------------------------------------------
consensus_6909#1 ----------------------------------------------------TCGTGTGG 8
consensus_6909#0 TTTATATAGAATCTGAGTAGTAGATAAAGTTTACAATAAGGGGGCTTTTTCTTTCAATCT 300
consensus_6909#2 ------------------------------------------------------------
consensus_6909#1 TGTNTGCTGTTGTTCGTTGTCGCACATTGTGTTNCNCAGAGGGAACTTGANGGCCCGTTT 68
consensus_6909#0 CTCTCTTTCTCTCTCTCTCAC-ACATATTT-TCCAAGAAACTTA-TGCCCTTAT-ACCAC 356
consensus_6909#2 ------------------CACGAGATATTTGTCCATGAAACTTA-TGCACTTATGACCAC 41
consensus_6909#1 ATGAGCNCGACAGTTNNAGGGNCCAGGCGATTGCGTGCCACTGAATTTTCCCCGGACCCG 128
* * * * *** * * * ***
consensus_6909#0 ATTCATGTTCAGCTTCGTTCAC-TAT-TTACCAAA---CCAGTAATTGAAGTAGT-T-GA 409
consensus_6909#2 ATNCATGTTGAGTTTCGTTCACGTATGTTACCGNNGACCGAGTAATTGAAGTAGN-TTGA 100
consensus_6909#1 TTATTTGGGAAGTTACGTTNGA--GAGGCACCAG-----CCGTTNTCGCAGTAATGTTTG 181
* ** ** * **** *** ** * * **** *
consensus_6909#0 AGAACACTTTCATAATGTTGGGTGTGTTTTG--CATGTATGTATGTGTGTATGGTGTTT- 466
consensus_6909#2 AGAACACTTTCATAATGTTGGTTGTGTTTTGTGCATGTATGTGTGTGTGTATGGTGTTTT 160
consensus_6909#1 GGGTTGTGCTTTTGTTGCCAATGNTAATTGG--TATGT-TGTATTGGT-----GCGTTT- 232
* * * ** * ** * **** *** * ** * ****
consensus_6909#0 AGTAGAGTGTATAGATTGT-AATAGTAGC-TCCT-TCCATGTAAACGCTCGTATCGTCTC 523
consensus_6909#2 AGTAGTGTTTATAGATTGT-ATTTATAGC-TCCT-TCCATGTAAACGCTCGTATCGTCTC 217
consensus_6909#1 AGTAGAGTGTATAGATTGTGAATCGTAGCGTCCTGTCCATGTATACGCTCGTATCGTCTC 292
***** ** ********** * * **** **** ******** ****************
consensus_6909#0 -TAAGTAAGGG-AATGGAAAATTTCATTTCCCAACAAATTAT-TACAC-TTTATT-TTCT 578
consensus_6909#2 CTAAGTAAGGG-AATGGAAAATTTCATTTCCCAACGAATTAT-TACACGTTTATT-CTCT 274
consensus_6909#1 -TAAGTAAGGGGAATGGAAAATTTCATTTCNCCG-ACATTATGTACACAGTTATGGTTCN 350
********** ****************** * ***** ***** **** **
consensus_6909#0 ACCGTTTT--CTCTCTTTCTCTCTCT-----TTCGTTTTCTTATGGATTGCGCCTACAAA 631
consensus_6909#2 ACCGTTTT--CTCT----TTCTCTCT-----TTCGTTTTCTTACGGATTGCGCTTACAAA 323
consensus_6909#1 ACCGTGTTTGCTCTCTGTGTCTCTCTGCGTGTTCGTTTTCTTATGGATTGCGCCTACAAA 410
***** ** **** ******* ************ ********* ******
consensus_6909#0 TGCTCCACGCTACTTGTCCAGTTCAAAGTTTTATCCGCAAACCAGGTCCCGGTAATGGTT 691
consensus_6909#2 TGCTCCACGCTACTTGTCCACTTTCAAGTTTTATCAGCAAACCAGGTCCCGGTAATGGTT 383
consensus_6909#1 TGCTCCACGCTACTTGTCCAGTTCAAAGTTTTATCCGCAAACCAGGTCCCGGTAATGGTT 470
******************** ** ********** ************************
consensus_6909#0 ACC-GCGATCGG-ACAAATCTACGTTCCAAAA-AATCTACAA-CACGAAACCAAACCACA 747
consensus_6909#2 ACCCGCGATCGG-ACAAATCTACGTTCCAAAA-AATCTACAAACAAGAAACCAAACCACA 441
consensus_6909#1 ACC-GCGATCGGTACAAATCTACGTTCCAAAAGAATCTACAA-CACGAAACCAAACCACA 528
*** ******** ******************* ********* ** **************
consensus_6909#0 CGCGATCGTCTCGCAGGTTTGCGTTCGCTTCTTCCACACAACACAACGCACTGCACTGGG 807
consensus_6909#2 CGCGATCCTCTCGCAGGTTGGCGTTCGCTTCTTTAACACAACTCAACGCACTGCTCTGGG 501
consensus_6909#1 CGCGATCGTCTCGCAGGTTTGCGTTCGCTTCTTCCACACAACACAACGCACTGCACTGGG 588
******* *********** ************* ******* *********** *****
consensus_6909#0 GCCGGTCGAATGCAGGGGAGCATTAAACCCATCGACCATCAACGACCCAACAGTGCTG-T 866
consensus_6909#2 CCCGTCCGAATGT-GGGTAGCATTAAACCC---GACCATCGACGACCCAACAGTGCGGAT 557
consensus_6909#1 -CCGGTCGAATGCAGGGGAGCATTAAACCCATCGACCATCAACGACCCAACAGTGCTG-T 646
*** ****** *** ************ ******* *************** * *
consensus_6909#0 GAATTGTGGTCACAA-ATTTTACAAACAACATAACAGCGTAACAAGTTAAGGGTTAAAGG 925
consensus_6909#2 GAATTGTG-TCACAAGATTTTACAAACAACATAACAT--NAACCTCGTGCGAT------- 607
consensus_6909#1 GAATTGTGGTCACAA-ATTTTACAAACAACATAACAGCGTAACAAGTTAAGGGTTAAAGG 705
******** ****** ******************** *** * *
consensus_6909#0 TTATACAGTGGAAACATATACACATAAAGATAAAAGGGGAAGAATCGTTCTGCATTGTCC 985
consensus_6909#2 ------------------------------------------------------------
consensus_6909#1 TTATACAGTGGAAACATATACACATAAAGATAAAAGGGGAAGAATCGTTCTGCATTGTCC 765
consensus_6909#0 AGTGCTTAAGGTTAAAAAAGAAAAACACGATGTCGCG----------------------- 1022
consensus_6909#2 ------------------------------------------------------------
consensus_6909#1 AGTGCTTAAGGTTAAAAAAGAAAAACACGATGTCGCGTTGCGAATGTCANCCTCGGGCGA 825
consensus_6909#0 ---
consensus_6909#2 ---
consensus_6909#1 TTC 828
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||