cluster # 6912

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Anopheles gambiae
cluster # 6912 cluster # 6912 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6912#0 length = 773 sequences # 4

consensus_6912#1 length = 491 sequences # 1
consensus_6912#2 length = 461 sequences # 1

consensusID : consensus_6912#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 773
fasta sequence

                              [TACCGAGATTTTATCAGCAGGCAAACTAATGAAGTATTTTGCTAAGCGTGTGTGAAGCCAGCAGAGGTGGTACGGTATGGTTGTACCGGTACCACCACAACAGTGTACGCAGTTGCTTGTAATGGAATGGAAAGCAAGATGGAATGCTTTACCCTCCCCCAATCTGCAGATGGTCAGATTTTAAGCCTTTTTTTTAAAAAAATTAGTTCCGGCAAACAGCTGCTGTAGTAGCTCTGCTTGCGTTTGATGATTTTACTGGTGCAGCAAATTGCCACAAACCCCACCCCCACACGAGAACTATAGAAAGAACTAAATGCTTCTTGAAACCAGCAAAAGCAACAACAAACACGTTGATAAAACCCCCCCTTTTTTACGTTCACGTTTCTTCGTACGATATACTTTGCACTCAAGAACACTATGTTCGTTTGTTTCGAAACGCCTCGTTTAATGCATGAAAATATTAAAAAAAAAGAAAAGAAAATCACTAACAAATCCGCCACAACTGTTGAGATGATCAAACATTGTATTTCTCCTTCACCACACGCGCACTTCCGCTATAAGCGTTGAATTCACAATGACGAACAATATCTGCAAACATGTCCTGTACTTTTTTTTTCTTCAATTTTTGTTTCTCAAAAGAATTTCATTTTAAAAAAAAAACACAGTCCCTTTTACCTACACAGTGACGCGTCTATGGGGTGAATGTGGGAAGGGATCTTCTGCATAGAATTGGGAAAATAAATCAAGTATGGCTCGCTTTGCATTGAAACATT]

[+] EMBL BM601518             [  CCGAGATTTTATCAGCAGGCAAACTAATGAAGTATTTTGCTAAGCGTGTGTGAAGCCAGCAGAGGTGGTACGGTATGGTTGTACCGGTACCACCACAACAGTGTACGCAGTTGCTTGTAATGGAATGGAAAGCAAGATGGAATGCTTTACCCTCCCCCAATCTGCAGATGGTCAGATTTTAAGCCTTTTTTTTAAAAAAATTAGTTCCGGCAAACAGCTGCTGTAGTAGCTCTGCTTGCGTTTGATGATTTTACTGGTGCAGCAAATTGCCACAAACCCCACCCCCACACGAGAACTATAGAAAGAACTAAATGCTTCTTGAAACCAGCAAAAGCAACAACAAACACGTTGATAAAACCCCCCCTTTTTTACGTTCACGTTTCTTCGTACGATATACTTTGCACTCAAGAACACTATGTTCGTTTGTTTC AAACGCCTCGTTTAATGCATGAAAATATTAAAAAAAAAGAAAAGAAAATCACTAACAAATCCGCCACAACTGTTGAGATGATCAAACATTGTATTTCTCCTTCACCACACGCGCACTTCC                                                                                                                                                                                                                            ]
[+] EMBL BX626611             [tatttAGATTTTAGCAGCAGGCAAACTAATGAAGTATTTTGCTAAGCGTGTGTGAAGCCAGCAGAGGTGGTACGGTATGGTTGTACCGGTACCACCACAACAGTGTACGCAGTTGCTTGTAATGGAATGGAAAGCAAGATGGAATGCTTTACCCTCCCCCAATCTGCAGATGGTCAGATTTTAAGCCTTTTTTTTAAAAAAATTAGTTCCGGCAAACAGCTGCTGTAGTAGCTCTGCTTGCGTTTGATGATTTTACTGGTGCAGCAAATTGCCACAAACCCCACCCCCACACGAGAACTATAGAAAGAACTAAATGCTTCTTGAAACCAGCAAAAGCAACAACAAACACGTTGATAAAACCCCCCCTTTTTTACGTTCACGTTTCTTCGTACGATATACTTTGCACTCAAGAACACTATGTTCGTTTGTTTCGAAACGCCTCGTTTAATGCATG                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BX628484             [                                                                                                                                                                                                                                           GCTTGCGTTTGATGATTTTACTGGTGCAGCAAATTGCCACAAACCCCACCCCCACACGAGAACTATAGAAAGAACTAAATGCTTCTTGAAACCAGCAAAAGCAACAACAAACACGTTGATAAAACCCCCCCTTTTTTACGTTCACGTTTCTTCGTACGATATACTTTGCACTCAAGAACACTATGTTCGTTTGTTTCGAAACGCCTCGTTTAATGCATGAAAATATTAAAAAAAAAGAAAAGAAAATCACTAACAAATCCGCCACAACTGTTGAGATGATCAAACATTGTATTTCTCCTTCACCACACGCGCACTTCCGCTATAAGCGTTGAATTCACAATGACGAACAATATCTGCAAACATGTCCTGTACTTTTTTTTTCTTCAATTTTTGTTTCTCAAAAGAATTTCATTTTAAAAAAAAAACACAGTCCCTTTTACCTACACAGTGACGCGTCTATGGGGTGAATGTGGGAAGGGATCTTCTGCATAGAATTGGGAAAATAAATCAAGTATGGCTCGCTTTGCA          ]
[-] EMBL BM599693             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GAAAATCCCTAACAAATCCGCCACAACTGTTGAGATGATCAAACATTGTATTTTTCCTTCACCACACGCGCACTTCCGCTATAAGCGTTGAATTCACAATGACGAACAATATTTGCAAACATGTCCTGTACTTTTTTTTTCTTCAATTTTTGTTTCTCAAAAGAATTTCATTTAAAAAAAAAAACACAGTCCCTTTTACCTACACAGTGACGCGTCTATGGGGTGAATGTTGGAAGGGA   TCTGCATAGAATTGGGAAAATAAATCAAGTATGGCTCGCTTTGCATTGAAACATT]




>consensus_6912#0
TACCGAGATTTTATCAGCAGGCAAACTAATGAAGTATTTTGCTAAGCGTGTGTGAAGCCA
GCAGAGGTGGTACGGTATGGTTGTACCGGTACCACCACAACAGTGTACGCAGTTGCTTGT
AATGGAATGGAAAGCAAGATGGAATGCTTTACCCTCCCCCAATCTGCAGATGGTCAGATT
TTAAGCCTTTTTTTTAAAAAAATTAGTTCCGGCAAACAGCTGCTGTAGTAGCTCTGCTTG
CGTTTGATGATTTTACTGGTGCAGCAAATTGCCACAAACCCCACCCCCACACGAGAACTA
TAGAAAGAACTAAATGCTTCTTGAAACCAGCAAAAGCAACAACAAACACGTTGATAAAAC
CCCCCCTTTTTTACGTTCACGTTTCTTCGTACGATATACTTTGCACTCAAGAACACTATG
TTCGTTTGTTTCGAAACGCCTCGTTTAATGCATGAAAATATTAAAAAAAAAGAAAAGAAA
ATCACTAACAAATCCGCCACAACTGTTGAGATGATCAAACATTGTATTTCTCCTTCACCA
CACGCGCACTTCCGCTATAAGCGTTGAATTCACAATGACGAACAATATCTGCAAACATGT
CCTGTACTTTTTTTTTCTTCAATTTTTGTTTCTCAAAAGAATTTCATTTTAAAAAAAAAA
CACAGTCCCTTTTACCTACACAGTGACGCGTCTATGGGGTGAATGTGGGAAGGGATCTTC
TGCATAGAATTGGGAAAATAAATCAAGTATGGCTCGCTTTGCATTGAAACATT

consensusID : consensus_6912#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 491
fasta sequence

                              [CCGCCCACGCGTCCGCAATGACGAACAATATCTGCAAACATGTCCTGCACTTTTTTTTTCTTCAATTTTTGTTTCTCAAAAGAATTTCATTTTAAAAAAAAAACACAGTCCCTTTTACCTACACAGTGACGCGTCTATGGGGTGAATGTGGGAAGGGATCTTCTGCATAGAATTGGGAAAATAAATCAAGTATGGCTCGCTTTGCATTCAAACATTGAACTTCGAGAGAATCCGGCTAGCCAAATCATAAATACAACTTACAGAAATTCATGCCCCAACAAACAAACACATCTTGAATGCAACCCCGGAGATACTTCACCGCATCTATTATTACATCGTGACGCACATTATCTTTTGTGTTTTTTTTCCTGTTTGGGGCAAATCAACAACTCAATCGGGTGTGTGTACTGGAGTGCAGAAAAGCAACAAAGCGGAAGAGGAAGGATAAGATGAAACACACGAACTTCAAGATGAAAAGCGCGGGGTTTCAT]

[+] EMBL BM619984             [CCGCCCACGCGTCCGCAATGACGAACAATATCTGCAAACATGTCCTGCACTTTTTTTTTCTTCAATTTTTGTTTCTCAAAAGAATTTCATTTTAAAAAAAAAACACAGTCCCTTTTACCTACACAGTGACGCGTCTATGGGGTGAATGTGGGAAGGGATCTTCTGCATAGAATTGGGAAAATAAATCAAGTATGGCTCGCTTTGCATTCAAACATTGAACTTCGAGAGAATCCGGCTAGCCAAATCATAAATACAACTTACAGAAATTCATGCCCCAACAAACAAACACATCTTGAATGCAACCCCGGAGATACTTCACCGCATCTATTATTACATCGTGACGCACATTATCTTTTGTGTTTTTTTTCCTGTTTGGGGCAAATCAACAACTCAATCGGGTGTGTGTACTGGAGTGCAGAAAAGCAACAAAGCGGAAGAGGAAGGATAAGATGAAACACACGAACTTCAAGATGAAAAGCGCGGGGTTTCAT]




>consensus_6912#1
CCGCCCACGCGTCCGCAATGACGAACAATATCTGCAAACATGTCCTGCACTTTTTTTTTC
TTCAATTTTTGTTTCTCAAAAGAATTTCATTTTAAAAAAAAAACACAGTCCCTTTTACCT
ACACAGTGACGCGTCTATGGGGTGAATGTGGGAAGGGATCTTCTGCATAGAATTGGGAAA
ATAAATCAAGTATGGCTCGCTTTGCATTCAAACATTGAACTTCGAGAGAATCCGGCTAGC
CAAATCATAAATACAACTTACAGAAATTCATGCCCCAACAAACAAACACATCTTGAATGC
AACCCCGGAGATACTTCACCGCATCTATTATTACATCGTGACGCACATTATCTTTTGTGT
TTTTTTTCCTGTTTGGGGCAAATCAACAACTCAATCGGGTGTGTGTACTGGAGTGCAGAA
AAGCAACAAAGCGGAAGAGGAAGGATAAGATGAAACACACGAACTTCAAGATGAAAAGCG
CGGGGTTTCAT

consensusID : consensus_6912#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 461
fasta sequence

                              [AGAATCGNCACGAGGNGATATCTGCAAACATGTCCTGGTACTTTTTTTTTCTTCAATTTTTGTTTCTCAAAAGAATTTCATTTTAAAAAAAAAAACACAGTCCCTTTTACCTACACAGTGACGCGTCTATNGGGTGAATGTGGGAAGGGATCTTCTGCATAGAATTGGGAAAATAAATCAAGTATGGCTCGCTTTGCATTCAAACATTGAACTTCGAGAGAATCCGGCTAGCCAAATCATAGATACAACTTAGGAGAAATTCATGCCCCAACAAACAAACACATCTTGAATGCAACCCCGGAGATACTTCACCGTAGTTATTATTACAGTCGTGACGCACATTATCTTTGTGTTTATATANATNANCCTGTTTGGGGCAAATCAAGCAAGCTCAAGTCGTGTGTGTGTACTGGAGTGCAGGAAANAGCAACAAAGGCGGGAAGAGGAAGGATAAGATGAAA]

[+] EMBL BX469235             [AGAATCGNCACGAGGNGATATCTGCAAACATGTCCTGGTACTTTTTTTTTCTTCAATTTTTGTTTCTCAAAAGAATTTCATTTTAAAAAAAAAAACACAGTCCCTTTTACCTACACAGTGACGCGTCTATNGGGTGAATGTGGGAAGGGATCTTCTGCATAGAATTGGGAAAATAAATCAAGTATGGCTCGCTTTGCATTCAAACATTGAACTTCGAGAGAATCCGGCTAGCCAAATCATAGATACAACTTAGGAGAAATTCATGCCCCAACAAACAAACACATCTTGAATGCAACCCCGGAGATACTTCACCGTAGTTATTATTACAGTCGTGACGCACATTATCTTTGTGTTTATATANATNANCCTGTTTGGGGCAAATCAAGCAAGCTCAAGTCGTGTGTGTGTACTGGAGTGCAGGAAANAGCAACAAAGGCGGGAAGAGGAAGGATAAGATGAAA]




>consensus_6912#2
AGAATCGNCACGAGGNGATATCTGCAAACATGTCCTGGTACTTTTTTTTTCTTCAATTTT
TGTTTCTCAAAAGAATTTCATTTTAAAAAAAAAAACACAGTCCCTTTTACCTACACAGTG
ACGCGTCTATNGGGTGAATGTGGGAAGGGATCTTCTGCATAGAATTGGGAAAATAAATCA
AGTATGGCTCGCTTTGCATTCAAACATTGAACTTCGAGAGAATCCGGCTAGCCAAATCAT
AGATACAACTTAGGAGAAATTCATGCCCCAACAAACAAACACATCTTGAATGCAACCCCG
GAGATACTTCACCGTAGTTATTATTACAGTCGTGACGCACATTATCTTTGTGTTTATATA
NATNANCCTGTTTGGGGCAAATCAAGCAAGCTCAAGTCGTGTGTGTGTACTGGAGTGCAG
GAAANAGCAACAAAGGCGGGAAGAGGAAGGATAAGATGAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6912#1      -------------------------CCGCCCACGCGTCC-GCAATG-ACGAACAATATCT 33
consensus_6912#2      ---------------------------------AGAATC-GNCACG-AGGNG--ATATCT 23
consensus_6912#0      TACCGAGATTTTATCAGCAGGCAAACTAATGAAGTATTTTGCTAAGCGTGTGTGAAGCCA 60
                                                              *  * *   *    *   * 

consensus_6912#1      GCAAACATGTCCTG-CACTTTTTTTTT----CTTCAATTTTTGTTT-CTCAAAAGAATTT 87
consensus_6912#2      GCAAACATGTCCTGGTACTTTTTTTTT----CTTCAATTTTTGTTT-CTCAAAAGAATTT 78
consensus_6912#0      GCAGAGGTGGTACGGTATGGTTGTACCGGTACCACCACAACAGTGTACGCAGTTGCTTGT 120
                      *** *  **    *  *   ** *       *  * *     ** * * **   *  * *

consensus_6912#1      CATTTTAAAAAAAAAA-CACAGTCCCTTTTACCTACACAGTGACGCGTCTATGGGGTGAA 146
consensus_6912#2      CATTTTAAAAAAAAAAACACAGTCCCTTTTACCTACACAGTGACGCGTCTATNGGGTGAA 138
consensus_6912#0      AATGGAATGGAAAGCAAGATGGAATGCTTTACCCTCCCC-CAATCTGCAGATGGTCAGAT 179
                       **   *   ***  *  *  *     ******  * *    *   *   ** *   ** 

consensus_6912#1      TGTGGGAAGGGATCTTCTGCATAGAATTGG-----GAAAATAAATCAAGTA-TGGCTCGC 200
consensus_6912#2      TGTGGGAAGGGATCTTCTGCATAGAATTGG-----GAAAATAAATCAAGTA-TGGCTCGC 192
consensus_6912#0      TTT---AAGCCTTTTTTTTAAAAAAATTAGTTCCGGCAAACAGCTGCTGTAGTAGCTCTG 236
                      * *   ***   * ** *  * * **** *     * *** *  *   *** * ****  

consensus_6912#1      TTTGCATTCAAACATTGAACT--TCGAGAGAAT--CCGGCTAGCCAAATCATAAATACAA 256
consensus_6912#2      TTTGCATTCAAACATTGAACT--TCGAGAGAAT--CCGGCTAGCCAAATCATAGATACAA 248
consensus_6912#0      CTTGCGTTTGATGATTTTACTGGTGCAGCAAATTGCCACAAACCCCACCCCCACACGAGA 296
                       **** **  *  ***  ***  *  **  ***  **    * ** *  *  * *    *

consensus_6912#1      CTTAC----AGAAATTCATGCCCCAACAAACAAACACATCTTGAATGCAACCC--CGGAG 310
consensus_6912#2      CTTAGG---AGAAATTCATGCCCCAACAAACAAACACATCTTGAATGCAACCC--CGGAG 303
consensus_6912#0      ACTATAGAAAGAACTAAATGCTTCTTGAAACCAGCAAAAGCAACAACAAACACGTTGATA 356
                        **     **** *  ****  *   **** * ** *      *   *** *   *   

consensus_6912#1      ATACTTCACCGCATCTATTATTACA-TCGTGACGCACATTAT-CT-----TTTGTGTTTT 363
consensus_6912#2      ATACTTCACCGTAGTTATTATTACAGTCGTGACGCACATTAT-CTTTGTGTTTATATANA 362
consensus_6912#0      AAACCCCCCCTTTTTTACGTTCACG-TTTCTTCGTACGATATACTTTGCACTCAAGAACA 415
                      * **  * **     **   * **  *     ** **  *** **      *        

consensus_6912#1      TTTTCCT-GTTTGGGGCAAATCAAC--AACTCAA-TCGGGTGTGTGT--ACTGGAGTGCA 417
consensus_6912#2      TNANCCT-GTTTGGGGCAAATCAAGCAAGCTCAAGTCGTGTGTGTGT--ACTGGAGTGCA 419
consensus_6912#0      CTATGTTCGTTTGTTTCGAAACGCCT-CGTTTAATGCATGAAAATATTAAAAAAAAAGAA 474
                            * *****   * ** *        * **  *  *    * *  *    *  * *

consensus_6912#1      G--AAAAGCA---ACAAAG--CGGAAGAGGAAGGATAAGATGAAACACACGAACTTCAAG 470
consensus_6912#2      GGAAANAGCA---ACAAAGGCGGGAAGAGGAAGGATAAGATGAAA--------------- 461
consensus_6912#0      AAGAAAATCACTAACAAATCCGCCACAACTGTTGAGATGATCAAACATTGTATTTCTCCT 534
                         ** * **   *****      *  *     ** * *** ***               

consensus_6912#1      ATGAAAAGCGCGGGGTTTCAT--------------------------------------- 491
consensus_6912#2      ------------------------------------------------------------
consensus_6912#0      TCACCACACGCGCACTTCCGCTATAAGCGTTGAATTCACAATGACGAACAATATCTGCAA 594
                                                                                  

consensus_6912#1      ------------------------------------------------------------
consensus_6912#2      ------------------------------------------------------------
consensus_6912#0      ACATGTCCTGTACTTTTTTTTTCTTCAATTTTTGTTTCTCAAAAGAATTTCATTTTAAAA 654
                                                                                  

consensus_6912#1      ------------------------------------------------------------
consensus_6912#2      ------------------------------------------------------------
consensus_6912#0      AAAAAACACAGTCCCTTTTACCTACACAGTGACGCGTCTATGGGGTGAATGTGGGAAGGG 714
                                                                                  

consensus_6912#1      -----------------------------------------------------------
consensus_6912#2      -----------------------------------------------------------
consensus_6912#0      ATCTTCTGCATAGAATTGGGAAAATAAATCAAGTATGGCTCGCTTTGCATTGAAACATT 773