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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6915#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1084 fasta sequence
[TTTTTTTTTTTGCCTCTCACTCACACAAACACACTCACACACACATTTGATGGGCGTGTGTATTTCAGCAGGGGGCGAAAATTGCCACCCACCCCGGGAAGCACAACTAACACACAATGCGAGGAAATAAAATAAAATAAAAAAAAAACACACACACACACGCGCGCGCCGATCACAAACCGAGCAGAGGCGCCACCACGCACGACATTCACCTTCCGGGCAATGAATAAATCACTTTGCTCAATACAATTTTCCCTCCCCTTCCGCACACACACATGCACGCACACAGCACATATACACACAAACACACACGAGCGTACGATGTACACCTTTAGGGGGTGATTCGCCCGGTCGTTCGTCGTTTGTTTCACCGATTGCCCTCGCACGGCTGGAGAAACAAGTTTCGGAATGCTGGAAAACTAGCACCAAATTCACATCTTCTTGCGACACGCGACCCACTTCGGTCTTGCAAACGCATGGAGGATATCAAGAGGAAATAAAATTTTTCACTACCACTGTCTCCCTCCTTGCAGGCTAGCCGGCAGGTTGGATTGCGTGGAAAAACAAACGTCAAGGACTTGCCCCGCTTGCCGTCTTTCTGATGTGTTTCACTACACTACGATGAATTGTTGAGCTGCCCGTGGGTTTTGCTTTCACCTCGGGATTGCCTAGCAAGCTCGAAACGTTTGCCGTAGAAATGTGTATCTATATACACT-CGCACAGTGCGCTCTCTCTGCCTCCATCCACATTCAGTTTGTAATCCTTTGCTTCCTTGCTGTTTACGGGCGCTTCATTTGAAGCTACTCGCCGCTTTGCACCGACAAGAACGTAGGCAACGTCGAAACGTCGCTTTATGAACTGTGCTCGATGAATAATAAGACTGTGTGTGCTGGGAAGTCGTTTCTTTTTTTTTCATTCGTTTGTTTTGTTATTAATGGATAAACATTCGAGTCGTCACTTTTATATAATTAAGCGCAAATACGCTAACTGGATTGATTTTTTTTGTTTGTTT-CACTTAAGTTCACTTGTCACTCCACTCAATTCTTTTTAGTGTGAAATGGTTGTTTTTTTACTTAGATTTTTT]
[+] EMBL CNS08X1M [TTTTTTTTTTTGCCTCTCACTCACACAAACACACTCACACACACATTTGAGGGGCGGGTGTATTTCAGCAGGGGGCGAAAATTGCCACCCACCCCGGGAAGCACAACTAACACACAATGCGAGGAAATAAAATAAAAT AAAAAAAAACACACACACACACGCGCGCGCCGATCACAAACCGAGCAGAGGCGCCACCACGCACGACATTCACCTTCCGGGCAATGAATAAATCACTTTGCTCAATACAATTTTCCCTCCCCTTCCGCACACACACATGCACGCACACAGCACATATACACACAAACACACACGAGCGTACGATGTACACCTTTAGGGGGTGATTCGCCCGGTCGTTCGTCGTTTGTTTCACCGATTGCCCTCGCACGGCTGGAGAAACAAGTTTCGGAATGCTGGAAAACTAGCACCAAATTCACATCTTCTTGCGACACGCGACCCACTTCGGTCTTGCAAACGCATGGAGGATATCAAGAGGAAATAAAATTTTTCACTACCACTGTCTCCCTCCTTGCAGGCTAGCCGGCAGGTTGGATTGCGTGGAAAAACAAACGTCAAGGACTTGCCCCGCTTGCCGTCTTCCTGATGTGTTTCACTACACTACGATGAATTGTTGAGCTGCCCGTGGGTTTTGCTTTCACCTCGGGATTGCCTAGCAAGCTCGAAACGTTTGCCGTAGAAATGTGTATCTATATACACT CGCACAGTGCGCTCTCTCTGCCTCCATCCACATTCAGTTTGTAATCCTTTGCTTCCTTGCTGTTTACGGGCGCTTCATTTGAAGCTACTCGCCGCTTTGCACCGACAAGAACGTAGGCAACGTCGAAACGTCGCTTTATGAACTGTGCTCGATGAATAAAAAGACTGTGTGTGCGGGGAAGTCGTTTCTTTTTTTTTCATTCGTTTGTTTTGTTATTAATGGATAAACATTCGAGTCGTC ]
[+] EMBL CNS08T21 [ tgaaatACTCACACAAACACACTCACACACACATTTGATGGGCGTGTGTATTTCAGCAGGGGGCGAAAATTGCCACCCACCCCGGGAAGCACAACTAACACACAATGCGAGGAAATAAAATAAAATAAAAAAAAAACACACACACACACGCGCGCCCCGATCACAAACCGAGCAGAGGCGCCACCACGCACGACATTCACCTTCCGGGCAATGAATAAATCACTTTGCTCAATACAATTTTCCCTCCCCTTCCGCACACACACATGCACGCACACAGCACATATACACACAAACACACACGAGCGTACGATGTACACCTTTAGGGGGTGATTCGCCCGGTCGTTCGTCGTTTGTTTCACCGATTGCCCTCGCACGGCTGGAGAAACAAGTTTCGGAATGCTGGAAAACTAGCACCAAATTCACATCTTCTTGCGACACGCGACCCACTTCGGTCTTGCAAACGCATGGAGGATATCAAGAGGAAATAAAATTTTTCACTACCACTGTCTCCCTCCTTGCAGGCTAGCCGGCAGGTTGGATTGCGTGGAAAAACAAACGTCAAGGACTTGCCCCGTTTGCCGTCTTTCTGATGTTTTTCACTACACTACGATGAATTGTTGAGCTGCCCGTGGGTTTTGCTTTCACCTCGGGATTTCCTAGCAAGCTCGAAACGTTTGCCGTAGAAATGTGTATTTATATACACT CGCACAGTGCGCTCTCTCTGCCTCCATCCACATTCAGTTTGTAATCCTTTGCTTCCTTGCTGTTTACGGGCGCTTCATTTGAAGCTACTCGCCGCTTTGCACCGACAAGAACGTAGGCAACGTCGAAACGTCGCTTTATGAACTGTGCTCGATGAATAATAAGACTGTTTGTTCTGG ]
[+] EMBL CNS090ID [ AACACACTCACACACACATTTGATGGGCGTGTGTATTTCAGCAGGGGGCGAAAATTGCCACCCACCCCGGGAAGCACAACTAACACACAATGCGAGGAAATAAAATAAAATAAAAAAAAAACACACACACACACGCGCGCGCCGATCACAAACCGAGCAGAGGCGCCACCACGCACGACATTCACCTTCCGGGCAATGAATAAATCACTTTGCTCAATACAATTTTCCCTCCCCTTCCGCACACACACATGCACGCACACAGCACATATACACACAAACACACACGAGCGTACGATGTACACCTTTAGGGGGTGATTCGCCCGGTCGTTCGTCGTTTTTTTCACCGATTGCCCTCGCACGGCTGGAGAAACAATTTTTTGAATGCGGGAAAACAAGCACCAAATTCACATCTTCTTGCGACACGCGACCCACTTCGGTCTTGCAAACGCATGGAGGATATCAAGAGGAAATAAAATTTTTCACTACCACTGTCTCCCTCCTTGCAGGCTAGCCGGCAGGTTGGATTGCGTGGAAAAACAAACGTCAAGGACTTGCCCCGAAAAACGTCTTTCTGATGTGTTTCACTACACTACGATGAATTGTTGAGCTGCCCGTGGGTTTTGCTTTCACCTCGGGATTGCCTAGCAAGCTCGAAACGTTTGCCGTAGAAATGTGTATCTATATACACT CGCACAGTGCGCTCTCTCTGCCTCCATCCACATTCAGTTTGTAATCCTTTGCTTCCTTGCTGTTTACGGGCGCTTCATTTGAAGCTACTCGCCGCTTTGCACCGACAAGAACGTAGGCAACGTCGAAACGTCGCTTTATGAACTGTGCTCGATGAATAATAAGACTGTGTGTGCTGGGAAGTCGTTTCTTTTTTTTTCATTCGTTTGTTTTGTTATTAATGGATAAACATTCGAGTCGTCACTTTTATATAATTAAGCGCAAATACGCTAA ]
[-] EMBL CNS090IC [ AGCAGAGGCGCCACCACGCACGACATTCACCTTCCGGGCAATGAATAAATCACTTTGCTCAATACAATTTTCCCTCCCCTTCCGCACACACACATGCACGCACACAGCACATATACACACAAACACACACGAGCGTACGATGTACACCTTTAGGGGGTGATTCGCCCGGTCGTTCGTCGTTTGTTTCACCGATTGCCCTCGCACGGCTGGAGAAACAAGTGTCGGAATGCTGGAAAACTAGCACCAAATTCACATCTTCTTGCGACACGCGACCCACTTCGGTCTTGCAAACGCATGGAGGATATCAAGAGGAAATAAAATTTTTCACTACCACTGTCTCCCTCCTTGCAGGCTAGCCGGCAGGTTGGATTGCGTGGAAAAACAAACGTCAAGGACTTGCCCCGTTTGCCGTCTTTCTGATGTGTTTCACTACACTACGATGAATTGTTGAGCTGCCCGTGGGTTTTGCTTTCACCTCGGGATTGCCTAGCATTTTTTAAACGTTTGCCGTAGAAATGTGTATCTATATACACT CGCACAGTGCGCTCTCTCTGCCTCCATCCACATTCAGTTTGTAATCCTTTGCTTCCTTGCTGTTTACGGGCGCTTCATTTGAAGCTACTCGCCGCTTTGCACCGACAAGAACGTAGGCAACGTCGAAACGTCGCTAAAAGAACTGTGCTCGATGAATAATAAGACTGTGTGTGCTGGGAAGTCGTTTCTTTTTTTTTCATTCGTTTGTTTTGTTATTAATGGATAAACATTCGAGTCGTCACTTTTATATAATTAAGCGCAAATACGCTAACTGGATTGATTTTTTTTGTTTGTTT CACTTAAGTTCACTTGTCACTCCACTCAATTCTTTTTAGTGTGAAATGGTTGTTTTTTTACTTAGATT ]
[-] EMBL CNS08X1L [ TTGCCCTCCCCTTCCGCACACACACATGCACGCACACAGCACATATACACACAAACACACACGAGCGTACGATGTACACCTTTAGGGGGTGATTCGCCCGGTCGTTCGTCGTTTGTTTCACCGATTGCCCTCGCACGGCTGGAGAAACAAGTGTCGGAATGCTGGAAAACTAGCACCAAATTCACATCTTCTTGCGACACGCGACCCACTTCGGTCTTGCAAACGCATGGAGGATATCAAGAGGAAATAAAATTTTTCACTACCACTGTCTCCCTCCTTGCAGGCTAGCCGGCAGGTTGGATTGCGTGGAAAAACAAACGTCAAGGACTTGCCCCGCTTGCCGTCTTCCTGATGTGTTTCACTACACTACGATGAATTGTTGAGCTGCCCGTGGGTTTTGCTTTCACCTCGGGATTGCCTAGCAAGCTCGAAACGTTTGCCGTAGAAATGTGTATCTATATACACTGCGCACAGTGCGCTCTCTCTGCCTCCATCCACATTCAGTTTGTAATCCTTTGCTTCCTTGCTGTTTACGGGCGCTTCATTTGAAGCTACTCGCCGCTTTGCACCGACAAGAACGTAGGCAACGTCGAAACGTCGCTTTATGAACTGTGCTCGATGAATAATAAGACTGTGTGTGCTGGGAAGTCGTTTCTTTTTTTTTCATTCGTTTGTTTTGTTATTAATGGATAAACATTCGAGTCGTCACTTTTATATAATTAAGCGCAAATACGCTAACTGGATTGATTTTTTTTGTTTGTTTGCACTTAAGTTCACTTGTCACTCCACTCAATTCTTTTTAGTGTGAAATGGTTGTTTTTTTACTTAGATTTTTT]
consensusID : consensus_6915#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 968 fasta sequence
[CTAAAAATCCGCACACACACATGCACGCACACAGCACATATACACACAAACACACACGAGCGTACGATGTACACCTTTAGGGGGTGATTCGCCCGGTCGTTCGTCGTTTGTTTCACCGATTGCCCTCGCACGGCTGGAGAAACAAGTGTCGGAATGCTGGAAAACTAGCACCAAATTCACATCTTCTTGCGACACGCGACCCACTTCGGTCTTGCAAACGCATGGAGGATATCAAGAGGAAATAAAATTTTTCACTACCACTGTCTCCTCTCCTTGCAGGCTAGCCGGCAGGTTGGATTGCGTGGAAAAACAAACGTCAAGGACTTGCCCCGTTTGCCGTCTTTCTGATGTGTTTCACTACACTACGATGAATTGTTGAGCTGCCCGTGGGTTTTGCTTTCACCTCGGGATTGCCTAGCAAGCTCGAAACGTTTGCCGTAGAAATGTGTATCTATATACACTCGCACAGTGCGCTCTCTCTGCCTCCATCCACATTCAGTTTGTAATCCTTTGCTTCCTTGCTGTTTACGGGCGCTTCATTTGAAGCTACTCGCCGCTTTGCACCGACAAGAACGTAGGCAACGTCGAAACGTCGCTTTATGAACTGTGCTCGATGAATAATAAGACTGTGTGTGCTGGGAAGTCGTTTCTTTTTTTTTCATTCGTTTGTTTTGTTATTAATGGATAAACATTCGAGTCGTCACTTTTATATAATTAAGCGCAAATACGCTAACTGGATTGATTTTTTTTGTTTGTTTCACTTAAGTTCACTTGTCACTCCACTCAATTCTTTTTAGTGTGAAATGGTTGTTTTTTTACTTAGATTTTTTTCACTTTTTTCACTTGCACAATTCAACACGTTGTACCGCAATTGCGCCCTAAAACACGCTAGTGCGATGCGCTTGGTGCGAGAAATACGCGTACACGAAATACGTAAAATACCGGCGCGCGCTGCGATAACACGTCCG]
[-] EMBL CNS08T20 [CTAAAAATCCGCACACACACATGCACGCACACAGCACATATACACACAAACACACACGAGCGTACGATGTACACCTTTAGGGGGTGATTCGCCCGGTCGTTCGTCGTTTGTTTCACCGATTGCCCTCGCACGGCTGGAGAAACAAGTGTCGGAATGCTGGAAAACTAGCACCAAATTCACATCTTCTTGCGACACGCGACCCACTTCGGTCTTGCAAACGCATGGAGGATATCAAGAGGAAATAAAATTTTTCACTACCACTGTCTCCTCTCCTTGCAGGCTAGCCGGCAGGTTGGATTGCGTGGAAAAACAAACGTCAAGGACTTGCCCCGTTTGCCGTCTTTCTGATGTGTTTCACTACACTACGATGAATTGTTGAGCTGCCCGTGGGTTTTGCTTTCACCTCGGGATTGCCTAGCAAGCTCGAAACGTTTGCCGTAGAAATGTGTATCTATATACACTCGCACAGTGCGCTCTCTCTGCCTCCATCCACATTCAGTTTGTAATCCTTTGCTTCCTTGCTGTTTACGGGCGCTTCATTTGAAGCTACTCGCCGCTTTGCACCGACAAGAACGTAGGCAACGTCGAAACGTCGCTTTATGAACTGTGCTCGATGAATAATAAGACTGTGTGTGCTGGGAAGTCGTTTCTTTTTTTTTCATTCGTTTGTTTTGTTATTAATGGATAAACATTCGAGTCGTCACTTTTATATAATTAAGCGCAAATACGCTAACTGGATTGATTTTTTTTGTTTGTTTCACTTAAGTTCACTTGTCACTCCACTCAATTCTTTTTAGTGTGAAATGGTTGTTTTTTTACTTAGATTTTTTTCACTTTTTTCACTTGCACAATTCAACACGTTGTACCGCAATTGCGCCCTAAAACACGCTAGTGCGATGCGCTTGGTGCGAGAAATACGCGTACACGAAATACGTAAAATACCGGCGCGCGCTGCGATAACACGTCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6915#0 TTTTTTTTTTTGCCTCTCACTCACACAAACACACTCACACACACATTTGATGGGCGTGTG 60
consensus_6915#1 ------------------------------------------------------------
consensus_6915#0 TATTTCAGCAGGGGGCGAAAATTGCCACCCACCCCGGGAAGCACAACTAACACACAATGC 120
consensus_6915#1 ------------------------------------------------------------
consensus_6915#0 GAGGAAATAAAATAAAATAAAAAAAAAACACACACACACACGCGCGCGCCGATCACAAAC 180
consensus_6915#1 ------------------------------------------------------------
consensus_6915#0 CGAGCAGAGGCGCCACCACGCACGACATTCACCTTCCGGGCAATGAATAAATCACTTTGC 240
consensus_6915#1 ------------------------------------------------------------
consensus_6915#0 TCAATACAATTTTCCCTCCCCTTCCGCACACACACATGCACGCACACAGCACATATACAC 300
consensus_6915#1 ---------------CTAAAAATCCGCACACACACATGCACGCACACAGCACATATACAC 45
** **************************************
consensus_6915#0 ACAAACACACACGAGCGTACGATGTACACCTTTAGGGGGTGATTCGCCCGGTCGTTCGTC 360
consensus_6915#1 ACAAACACACACGAGCGTACGATGTACACCTTTAGGGGGTGATTCGCCCGGTCGTTCGTC 105
************************************************************
consensus_6915#0 GTTTGTTTCACCGATTGCCCTCGCACGGCTGGAGAAACAAGTTTCGGAATGCTGGAAAAC 420
consensus_6915#1 GTTTGTTTCACCGATTGCCCTCGCACGGCTGGAGAAACAAGTGTCGGAATGCTGGAAAAC 165
****************************************** *****************
consensus_6915#0 TAGCACCAAATTCACATCTTCTTGCGACACGCGACCCACTTCGGTCTTGCAAACGCATGG 480
consensus_6915#1 TAGCACCAAATTCACATCTTCTTGCGACACGCGACCCACTTCGGTCTTGCAAACGCATGG 225
************************************************************
consensus_6915#0 AGGATATCAAGAGGAAATAAAATTTTTCACTACCACTGTCTCC-CTCCTTGCAGGCTAGC 539
consensus_6915#1 AGGATATCAAGAGGAAATAAAATTTTTCACTACCACTGTCTCCTCTCCTTGCAGGCTAGC 285
******************************************* ****************
consensus_6915#0 CGGCAGGTTGGATTGCGTGGAAAAACAAACGTCAAGGACTTGCCCCGCTTGCCGTCTTTC 599
consensus_6915#1 CGGCAGGTTGGATTGCGTGGAAAAACAAACGTCAAGGACTTGCCCCGTTTGCCGTCTTTC 345
*********************************************** ************
consensus_6915#0 TGATGTGTTTCACTACACTACGATGAATTGTTGAGCTGCCCGTGGGTTTTGCTTTCACCT 659
consensus_6915#1 TGATGTGTTTCACTACACTACGATGAATTGTTGAGCTGCCCGTGGGTTTTGCTTTCACCT 405
************************************************************
consensus_6915#0 CGGGATTGCCTAGCAAGCTCGAAACGTTTGCCGTAGAAATGTGTATCTATATACACTCGC 719
consensus_6915#1 CGGGATTGCCTAGCAAGCTCGAAACGTTTGCCGTAGAAATGTGTATCTATATACACTCGC 465
************************************************************
consensus_6915#0 ACAGTGCGCTCTCTCTGCCTCCATCCACATTCAGTTTGTAATCCTTTGCTTCCTTGCTGT 779
consensus_6915#1 ACAGTGCGCTCTCTCTGCCTCCATCCACATTCAGTTTGTAATCCTTTGCTTCCTTGCTGT 525
************************************************************
consensus_6915#0 TTACGGGCGCTTCATTTGAAGCTACTCGCCGCTTTGCACCGACAAGAACGTAGGCAACGT 839
consensus_6915#1 TTACGGGCGCTTCATTTGAAGCTACTCGCCGCTTTGCACCGACAAGAACGTAGGCAACGT 585
************************************************************
consensus_6915#0 CGAAACGTCGCTTTATGAACTGTGCTCGATGAATAATAAGACTGTGTGTGCTGGGAAGTC 899
consensus_6915#1 CGAAACGTCGCTTTATGAACTGTGCTCGATGAATAATAAGACTGTGTGTGCTGGGAAGTC 645
************************************************************
consensus_6915#0 GTTTCTTTTTTTTTCATTCGTTTGTTTTGTTATTAATGGATAAACATTCGAGTCGTCACT 959
consensus_6915#1 GTTTCTTTTTTTTTCATTCGTTTGTTTTGTTATTAATGGATAAACATTCGAGTCGTCACT 705
************************************************************
consensus_6915#0 TTTATATAATTAAGCGCAAATACGCTAACTGGATTGATTTTTTTTGTTTGTTTCACTTAA 1019
consensus_6915#1 TTTATATAATTAAGCGCAAATACGCTAACTGGATTGATTTTTTTTGTTTGTTTCACTTAA 765
************************************************************
consensus_6915#0 GTTCACTTGTCACTCCACTCAATTCTTTTTAGTGTGAAATGGTTGTTTTTTTACTTAGAT 1079
consensus_6915#1 GTTCACTTGTCACTCCACTCAATTCTTTTTAGTGTGAAATGGTTGTTTTTTTACTTAGAT 825
************************************************************
consensus_6915#0 TTTTT------------------------------------------------------- 1084
consensus_6915#1 TTTTTTCACTTTTTTCACTTGCACAATTCAACACGTTGTACCGCAATTGCGCCCTAAAAC 885
*****
consensus_6915#0 ------------------------------------------------------------
consensus_6915#1 ACGCTAGTGCGATGCGCTTGGTGCGAGAAATACGCGTACACGAAATACGTAAAATACCGG 945
consensus_6915#0 -----------------------
consensus_6915#1 CGCGCGCTGCGATAACACGTCCG 968
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||