|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6919#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1478 fasta sequence
[CCGCGGACGCGTGGGCGATATTACGAACTCATCCATCGAGGCCATCGTATTTTAGCTGTAAGAATGTAAACGCCCTTCTTCCCATCTCCCAATGAATACGCGAATGTACCAACACACACAAACAAACACACATACATACACAACGTAATGGAAGCAGCTCTCGAAACCGAAACCAAAAAGAGGAAGTAAAAAAACAAGCTCGATCAAATCGATGGGTGTCTGCGAGATCGCCCACAAGCAAGGCTAGCTTTTCGAATAGAAGAAAACCCGTAGTATGTTAAGGCGTTACTAAGTGTCGTGTGCGGTTCGGGTTTTGTGCCATTGGAACGGCTCTATCTTTTTACACTACTGGTGTTGAGTGCTGGGCTTGGGGTGGGGAGGGCATGGAAGGGGGATACGAAAATGTGTGTGTGTGTGTGTTTTGGTCTAGTTAATGCCAATAGGCTGAAAGGTACCCCGAACGTCGGTGTTTGTGTTGTGTACGTTGAATTTGCTAGTTTTAGTCACGAGAGCATCGTCGCATTCAAAACCACCGAAATCGTATGTGGACAGAAGAGCGCATAGAGATCCTCAACAATTTGTTTTTCATTAAAGTCTTTATGATTTATTTTCCAATTAGCTCCAATCATTCCCCATCCCATTAAAACAAACACACACACATAAAGGCACTGGCGTATCGATAGCTCGATCGTTTACCGAATTTGTCGAATACGAATACAGTTCGAAAACGGATGTGCTGTGGCCGGTACAAAGTACAAACCCCTCCTCTCCAGGAA--ACACACACACACACTAAAAGCGCCCTGCTGTGCATTACATGACAAGGCATCCGATTGCATCCCATGCCTGACTTCCCCCGAACCCGGCAAATTCGATGTGATAAGTTCAACACAACATTTAACTGTATTAAGCTCTGCGCGGG-AAAGGATGGGGCTGACGGAAGCGCTCTCGTCACACACACACACTTACAACTAGAGACAACTGGTCAGTTTAAATTTCCCACACAAGCAATAGACAGTGGTGAGAATGTGATGCGTTGCGTTGTTTCTGTGTGTATCCCAACCACCCTCCAGAACAAGGTAAACACAACAAAAAAAACACCCCAAACTGTTGCAGTATAGTAGAACTCTTACGTGCCTATAGTCTGTTAACAACTCGAACCGAACGCAACGCGCGGACATGGAAAACAAAAGTATTTGAATGAAAGATATAAAGAAGGGAGGAAAAACAAAGAAGAGCAGTGCAACAAAAAAAGAAGTACGAAATACACCGTAACACAACACAACACACACACCTAAATACGCAGAGCTAATATTTCCAAAACACGATACCAAAACAGAAAGACTTTGCCAACAAAAACAAAAAACAAAAACTGGCGGAAAAGCGAAGATGCAAACGAAACAAGGCGAATTAGGTAAACCCCGTGGAGGTGTTGACTAATGTCTCCCTCCACACCAACCAGCGGATGCCAGCCTATTGAT]
[+] EMBL BM613648 [CCGCGGACGCGTGGGCGATATTACGAACTCATCCATCGAGGCCATCGTATTTTAGCTGTAAGAATGTAAACGCCCTTCTTCCCATCTCCCAATGAATACGCGAATGTACCAACACACACAAACAAACACACATACATACACAACGTAATGGAAGCAGCTCTCGAAACCGAAACCAAAAAGAGGAAGTAAAAAAACAAGCTCGATCAAATCGATGGGTGTCTGCGAGATCGCCCACAAGCAAGGCTAGCTTTTCGAATAGAAGAAAACCCGTAGTATGTTAAGGCGTTACTAAGTGTCGTGTGCGGTTCGGGTTTTGTGCCATTGGAACGGCTCTATCTTTTTACACTACTGGTGTTGAGTGCTGGGCTTGGGGTGGGGAGGGCATGGAAGGGGGATACGAAAATGTGTGTGTGTGTGTGTTTTGGTCTAGTTAATGCCAATAGGCTGAAAGGTACCCCGAACGTCGGTGTTTGTGTTGTGTACGTTGAATTTGCTAGTTTTAGTCACGAGAGCATCGTCGCATTCAAAACCACCGAAATCGTATGTGGACAGAAGAGCGCATAGAGATCCTCAACAATTTGTTTTTCATTAAAGTCTTTATGATT ]
[+] EMBL BM632939 [ ccgggaAACACACACAAACAAACACACATACATACACAACGTAATGGAAGCAGCTCTCGAAACCGAAACCAAAAAGAGGAAGTAAAAAAACAAGCTCGATCAAATCGATGGGTGTCTGCGAGATCGCCCACAAGCAAGGCTAGCTTTTCGAATAGAAGAAAACCCGTAGTATGTTAAGGCGTTACTAAGTGTCGTGTGCGGTTCGGGTTTTGTGCCATTGGAACGGCTCTATCTTTTTACACTACTGGTGTTGAGTGCTGGGCTTGGGGTGGGGAGGGCATGGAAGGGGGATACGAAAATGTGTGTGTGTGTGTGTTTTGGTCTAGTTAATGCCAATAGGCTGAAAGGTACCCCGAACGTCGGTGTTTGTGTTGTGTACGTTGAATTTGCTAGTTTTAGTCACGAGAGCATCGTCGCATTCAAAACCACCGAAATCGTATGTGGACAGAAGAGCGCATAGAGATCCTCAACAATTTGTTTTTCATTAAAGTCTTTATGATTTATTTTCCAATTAGCTCCAATCATTCCCCATCCCATTAAAACAAACACACACACATAAAGGCACTGGCGTATCGATAGCTCGATCGTTTACCGAATTTGTCGAATACGAATACAGTTCGAAAACGGATGTGCTGTGGCCGGTACAAAGTACAAACCCCTCCTCT ]
[+] EMBL BM624662 [ ccGTGCGGTTCGGGTTTTGTGCCATTGGAACGGCTCTATCTTTTTACACTACTGGTGTTGAGTGCTGGGCTTGGGGTGGGGAGGGCATGGAAGGGGGATACGAAAATGTGTGTGTGTGTGTGTTTTGGTCTAGTTAATGCCAATAGGCTGAAAGGTACCCCGAACGTCGGTGTTTGTGTTGTGTACGTTGAATTTGCTAGTTTTAGTCACGAGAGCATCGTCGCATTCAAAACCACCGAAATCGTATGTGGACAGAAGAGCGCATAGAGATCCTCAACAATTTGTTTTTCATTAAAGTCTTTATGATTTATTTTCCAATTAGCTCCAATCATTCCCCATCCCATTAAAACAAACACACACACATAAAGGCACTGGCGTATCGATAGCTCGATCGTTTACCGAATTTGTCGAATACGAATACAGTTCGAAAACGGATGTGCTGTGGCCGGTACAAAGTACAAACCCCTCCTCTCCAGGAA ACACACACACACACTAAAAGCGCCCTGCTGTGCATTACATGACAAGGCATCCGATTGCATCCCATGCCTGACTTCCCCCGAACCCGGCAAATTCGATGTGATAAGTTCAACACAACATTTAACTGTATTAAGCTCTGCGCGGGAAAAGGATGGGGCTGACGGAAGCGCTCTCGTCACACACAact ]
[+] EMBL BX627778 [ TTCCAATTAGCTCCAATCATTCCCCATCCCATGAAAACAAATACACACACATAAAGGCACTGGCGTATCGATAGCTCGATCGTTTACCGAATTTGTCGAATACGAATACAGTTCGAAAACGGATGTGCTGTGGCCGGTACAAAGTACAAACCCCTCCTCTCCAGGAAACACACACACACACACTAAAAGCGCCCTGCTGTGCATTACATGACAAGGCATCCGATTGCATCCCATGCCTGACTTCCCCCGAACCCGGTAAATTCGATGTGATAAGTTCAACACAACATTTAACTGTATTAAGCTCTGCGCGGG AGAGGATGGAGATGACGGAAGCGCTCTCGTCACACACACACACTTACAACTAGAGACAACTGGTCAGTTTAAATTTCCCACACAAGCAATAGACAGTGGTGAGAATGTGATGCGTTGCGTTGTTTCTGTGTGTATCCCAACCACCCTCCAGAACAAGGTAAACACAACAAAAAAAACACCCCAAACTGTTGCAGTATAGTAGAACTCTTACGTGCCTATAGTCTGTTAACAACTCGAACCGAACGCAACGCGCGGACATGGAAAACAAAAGTATTTGAATGAAAGATATAAAGAAGGGAGGAAAAACAAAGAAGAGCAGTGCAACAAAAAAAGAAGTACGAAATACACCGTAACACAACACAACACACACACCTAAATACGCAGAGCTAATATTTCCAAAACACGATA ]
[+] EMBL BX611010 [ GCTCTCGTCACACACACACACTTACAACTAGAGACAACTGGTCAGTTTAAATTTCCCACACAAGCAATAGACAGTGGTGAGAATGTGATGCGTTGCTTTGTTTCGGTGTGTATCCCAACCCCCCTCCCGAACAAGGTAAACAAAAC AAAAAAACACCCCAAACTGTTGCAGTATAGTAGAACTCTTACGTGCCTATAGTCTGTTAACAACTCGAACCGAACGCAACGCGCGGACATGGAAAACAAAAGTATTTGAGTGAAAGATATAAAAAAGGAAGGAAAAACAAAGAAGAGCAGTGCAACAAAACAAGAAGTACGAAATACACCGTAACACAACAC ACACACACACCTAAATACGCAGAGCTAATATTTCCAAAACACGATACCAAAACAGAAAGACTTTGCCAACAAAAACAAAAAACAAAAACTGGCGGAAAAGCGAAGATGCAAACGAAACAAGGCGAATTAGGTAAACCCCGTGGAGGTGTTGACTAATGTCTCCCTCCACACCAACCAGCGGATGCCAGCCTATTGAT]
consensusID : consensus_6919#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 536 fasta sequence
[GTCTGGGAGATCGCCCACAAGCAAGGCTAGCTTTTCGAATAGAAGAAAACCCGTAGTATGTTAAGGCGTTACTAAGTGTCGTGTGCGGTTCGGGTTTTGTGCCATTGGAACGGCTCTATCTTTTTACACTAAAAGCGCCCTGCTGTGCATTACATGACAAGGCATCCGATTGCATCCCATGCCTGACTTCCCCCGAACCCGGTAAATTCGATGTGATAAGTTCAACACAACATTTAACTGTATTAAGCTCTGCGAGGGAGAGGATGGAGATGACGGAAGCGCTCTCGTCACACACACACACTTACAACTAGAGACAACTGGTCAGTTTAAATTTCCCACACAAGCAATAGACAGTGGTGAGAATGTGATGCGTTGCTTTGTTTCGGTGTGTATCCCAACCCCCCTCCCGAACAAGGTAAACAAAACAAAAAAACACCCCAAACTGTTGCAGTATAGTAGAACTCTTACGTGCCTATAGTCTGTTAACAACTCGAACCGAACGCAACGCGCGGACATGGAAAACAAAAGTATTTGAG]
[+] EMBL BX612673 [GTCTGGGAGATCGCCCACAAGCAAGGCTAGCTTTTCGAATAGAAGAAAACCCGTAGTATGTTAAGGCGTTACTAAGTGTCGTGTGCGGTTCGGGTTTTGTGCCATTGGAACGGCTCTATCTTTTTACACTAAAAGCGCCCTGCTGTGCATTACATGACAAGGCATCCGATTGCATCCCATGCCTGACTTCCCCCGAACCCGGTAAATTCGATGTGATAAGTTCAACACAACATTTAACTGTATTAAGCTCTGCGAGGGAGAGGATGGAGATGACGGAAGCGCTCTCGTCACACACACACACTTACAACTAGAGACAACTGGTCAGTTTAAATTTCCCACACAAGCAATAGACAGTGGTGAGAATGTGATGCGTTGCTTTGTTTCGGTGTGTATCCCAACCCCCCTCCCGAACAAGGTAAACAAAACAAAAAAACACCCCAAACTGTTGCAGTATAGTAGAACTCTTACGTGCCTATAGTCTGTTAACAACTCGAACCGAACGCAACGCGCGGACATGGAAAACAAAAGTATTTGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6919#0 CCGCGGACGCGTGGGCGATATTACGAACTCATCCATCGAGGCCATCGTATTTTAGCTGTA 60
consensus_6919#1 ------------------------------------------------------------
consensus_6919#0 AGAATGTAAACGCCCTTCTTCCCATCTCCCAATGAATACGCGAATGTACCAACACACACA 120
consensus_6919#1 ------------------------------------------------------------
consensus_6919#0 AACAAACACACATACATACACAACGTAATGGAAGCAGCTCTCGAAACCGAAACCAAAAAG 180
consensus_6919#1 ------------------------------------------------------------
consensus_6919#0 AGGAAGTAAAAAAACAAGCTCGATCAAATCGATGGGTGTCTGCGAGATCGCCCACAAGCA 240
consensus_6919#1 ------------------------------------------------------------
consensus_6919#0 AGGCTAGCTTTTCGAATAGAAGAAAACCCGTAGTATGTTAAGGCGTTACTAAGTGTCGTG 300
consensus_6919#1 ------------------------------------------------------------
consensus_6919#0 TGCGGTTCGGGTTTTGTGCCATTGGAACGGCTCTATCTTTTTACACTACTGGTGTTGAGT 360
consensus_6919#1 ------------------------------------------------------------
consensus_6919#0 GCTGGGCTTGGGGTGGGGAGGGCATGGAAGGGGGATACGAAAATGTGTGTGTGTGTGTGT 420
consensus_6919#1 ------------------------------------------------------------
consensus_6919#0 TTTGGTCTAGTTAATGCCAATAGGCTGAAAGGTACCCCGAACGTCGGTGTTTGTGTTGTG 480
consensus_6919#1 ------------------------------------------------------------
consensus_6919#0 TACGTTGAATTTGCTAGTTTTAGTCACGAGAGCATCGTCGCATTCAAAACCACCGAAATC 540
consensus_6919#1 ------------------------------------------------------------
consensus_6919#0 GTATGTGGACAGAAGAGCGCATAGAGATCCTCAACAATTTGTTTTTCATTAAAGTCTTTA 600
consensus_6919#1 ------------------------------------------------------------
consensus_6919#0 TGATTTATTTTCCAATTAGCTCCAATCATTCCCCATCCCATTAAAACAAACACACACACA 660
consensus_6919#1 ---------------------------------------GTCTGGGAGATCGCCCACAAG 21
* * * * ****
consensus_6919#0 TAAAGGCACTGGCGTATCGATAGCTCGATCGTTTACCGAATTTGTCGAATACGAATACAG 720
consensus_6919#1 CAAGG---CTAGCTTTTCGAATAGAAGA---------AAACCCGTAGTATGTTAAGGCGT 69
** * ** ** * **** ** ** ** * ** ** *
consensus_6919#0 TTCGAAAACGGATGTGCTGTGGCCGGTACAAAGTACAAACCCCTCCTCTCCAGGAAACAC 780
consensus_6919#1 TACTAA-------GTGTCGTGTGCGGTTCGGGTTTTGTGCCATTGGAAC---GGCTCTAT 119
* * ** *** *** **** * * ** * ** *
consensus_6919#0 ACACACACACTAAAAGCGCCCTGCTGTGCATTACATGACAAGGCATCCGATTGCATCCCA 840
consensus_6919#1 CTTTTTACACTAAAAGCGCCCTGCTGTGCATTACATGACAAGGCATCCGATTGCATCCCA 179
******************************************************
consensus_6919#0 TGCCTGACTTCCCCCGAACCCGGCAAATTCGATGTGATAAGTTCAACACAACATTTAACT 900
consensus_6919#1 TGCCTGACTTCCCCCGAACCCGGTAAATTCGATGTGATAAGTTCAACACAACATTTAACT 239
*********************** ************************************
consensus_6919#0 GTATTAAGCTCTGCGCGGGAAAGGATGGGGCTGACGGAAGCGCTCTCGTCACACACACAC 960
consensus_6919#1 GTATTAAGCTCTGCGAGGGAGAGGATGGAGATGACGGAAGCGCTCTCGTCACACACACAC 299
*************** **** ******* * *****************************
consensus_6919#0 ACTTACAACTAGAGACAACTGGTCAGTTTAAATTTCCCACACAAGCAATAGACAGTGGTG 1020
consensus_6919#1 ACTTACAACTAGAGACAACTGGTCAGTTTAAATTTCCCACACAAGCAATAGACAGTGGTG 359
************************************************************
consensus_6919#0 AGAATGTGATGCGTTGCGTTGTTTCTGTGTGTATCCCAACCACCCTCCAGAACAAGGTAA 1080
consensus_6919#1 AGAATGTGATGCGTTGCTTTGTTTCGGTGTGTATCCCAACCCCCCTCCCGAACAAGGTAA 419
***************** ******* *************** ****** ***********
consensus_6919#0 ACACAACAAAAAAAACACCCCAAACTGTTGCAGTATAGTAGAACTCTTACGTGCCTATAG 1140
consensus_6919#1 ACAAAACAAAAAAA-CACCCCAAACTGTTGCAGTATAGTAGAACTCTTACGTGCCTATAG 478
*** ********** *********************************************
consensus_6919#0 TCTGTTAACAACTCGAACCGAACGCAACGCGCGGACATGGAAAACAAAAGTATTTGAATG 1200
consensus_6919#1 TCTGTTAACAACTCGAACCGAACGCAACGCGCGGACATGGAAAACAAAAGTATTTGAG-- 536
*********************************************************
consensus_6919#0 AAAGATATAAAGAAGGGAGGAAAAACAAAGAAGAGCAGTGCAACAAAAAAAGAAGTACGA 1260
consensus_6919#1 ------------------------------------------------------------
consensus_6919#0 AATACACCGTAACACAACACAACACACACACCTAAATACGCAGAGCTAATATTTCCAAAA 1320
consensus_6919#1 ------------------------------------------------------------
consensus_6919#0 CACGATACCAAAACAGAAAGACTTTGCCAACAAAAACAAAAAACAAAAACTGGCGGAAAA 1380
consensus_6919#1 ------------------------------------------------------------
consensus_6919#0 GCGAAGATGCAAACGAAACAAGGCGAATTAGGTAAACCCCGTGGAGGTGTTGACTAATGT 1440
consensus_6919#1 ------------------------------------------------------------
consensus_6919#0 CTCCCTCCACACCAACCAGCGGATGCCAGCCTATTGAT 1478
consensus_6919#1 --------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||