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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6924#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 964 fasta sequence
[AGCAGAATCGCACGAGGTNTTGATCGTAGTAATAGTTTTTGTCGTAAAACAGAATTTACCAACCCACCGACCATGACGACCGCTGCACGTCCAACGTTCGATCCCGCCCGCGGTGGTAGCGGCGTGGCGAGAAGGATCTGAGTGCCCTTTCCAAAGCAGTGACAGCAGTCGCGATCTGCCAGCGACACACAAAGGCTACACAGTACCCAGCTGCAACCAAGGGGGCGCAAGGAGGCAACACCAAGGCCGGGAACAAGGGAAAGGCCCTTCCCCGGAGAGAAAAAACCCAGTTNGGAACCTTGATGNCGCCCGGACCGGCGCAACGGGGCACGGCCTTAGGTGGCACGGCAAAAATGGCACGGCCCGGGAAAGNCCAGGCAGNGGAAACACCAAGGGGTGAGAAAGGGCCAANCGCGGNGGAACAAGGCCCAAAAGGGGGGGCAATTTCCCGGCGGCGCCCGGTGTGCCCCCCGGAACCACGGGCGTTAACCGGGNCCCCGGNTTGGTCACCCCATTTGGGGAGCAAAGGCCCATGTATGGGGGTTACCCCCAGAGAGAGAGCCCATGTGTTTGGCCCNGNGGTGGGCCAATCGGCCAGCGGAACAATGTGCCAAAAACTCCAAAAGGCCCGGAAACCAAGGGGAAACACAANCCTTGGGCGGAACGGCTGNCCGAAGTCGACCAAANTACAAAAGAAACCGCCCTTTTTTGGAAAAACGGCCAGCAGTGGTCAAAGCCAGGAAATGTACCCCCACGGAGGTGTANAGGGAAACCCAAAAGGGCCCGGCAAATGGAACAAAACNTCTTCCCGGGGGAAACCACAAACCCACGGAGGGAAAGCNTTCCCGGAGGGAAACCTGAANAGTGGGAAACCCGGCGAAATTTAAACCCACCGGGCAATTTNGGGCGCCGCCCCTTTGGGATTATANACGGCGGCCCGGGGAAACCGGCGCTTATGAACAAA]
[+] EMBL AL696773 [AGCAGAATCGCACGAGGTNTTGATCGTAGTAATAGTTTTTGTCGTAAAACAGAATTTACCAACCCACCGACCATGACGACCGCTGCACGTCCAACGTTCGATCCCGCCCGCGGTGGTAGCGGCGTGGCGAGAAGGATCTGAGTGCCCTTTCCAAAGCAGTGACAGCAGTCGCGATCTGCCAGCGACACACAAAGGCTACACAGTACCCAGCTGCAACCAAGGGGGCGCAAGGAGGCAACACCAAGGCCGGGAACAAGGGAAAGGCCCTTCCCCGGAGAGAAAAAACCCAGTTNGGAACCTTGATGNCGCCCGGACCGGCGCAACGGGGCACGGCCTTAGGTGGCACGGCAAAAATGGCACGGCCCGGGAAAGNCCAGGCAGNGGAAACACCAAGGGGTGAGAAAGGGCCAANCGCGGNGGAACAAGGCCCAAAAGGGGGGGCAATTTCCCGGCGGCGCCCGGTGTGCCCCCCGGAACCACGGGCGTTAACCGGGNCCCCGGNTTGGTCACCCCATTTGGGGAGCAAAGGCCCATGTATGGGGGTTACCCCCAGAGAGAGAGCCCATGTGTTTGGCCCNGNGGTGGGCCAATCGGCCAGCGGAACAATGTGCCAAAAACTCCAAAAGGCCCGGAAACCAAGGGGAAACACAANCCTTGGGCGGAACGGCTGNCCGAAGTCGACCAAANTACAAAAGAAACCGCCCTTTTTTGGAAAAACGGCCAGCAGTGGTCAAAGCCAGGAAATGTACCCCCACGGAGGTGTANAGGGAAACCCAAAAGGGCCCGGCAAATGGAACAAAACNTCTTCCCGGGGGAAACCACAAACCCACGGAGGGAAAGCNTTCCCGGAGGGAAACCTGAANAGTGGGAAACCCGGCGAAATTTAAACCCACCGGGCAATTTNGGGCGCCGCCCCTTTGGGATTATANACGGCGGCCCGGGGAAACCGGCGCTTATGAACAAA]
consensusID : consensus_6924#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 802 fasta sequence
[CCGCGGACGCGTGGGCGGACGCGTGGGATCGATATTCCAGCGTCGTAGTAATAGTTTTTGTCGTAAAACAGAATTTACCAACCCACCGACCATGACGACCGCTGCACGTCCAACGTTCGATCCCGCCCGCGGTGGTAGCGGCCGTGGCGAGAAGGATCTGAGTGCCCTTTCCAAACAGTACAGCAGTCGCGATCTGCCAGGACACACAAAGCTAAAGTACCGTGACCAGGGCCAGAGCACCAGCGAAGAGCTCCGCAACCGTGACTTCCGCGAGGAGCTGGAGAAGCGCGAGCGGGACAGCAAGCAGGGAAGCAAGGGATCGGCCGTCCCG-ACGGCTCGCCGTGCCCTGGAGCAGGGTCCGGGCAGTGCGGGCAGCGGAAGCAACAAGCGACAGAAACTGGAGGCACCACAAAACCTTGACGCGGACGATCCGGTGGACAGCGAGAACTCGGACACGGACTCGGACGAGGACGATACGGCTGCCCTGTTGGCGGAGCTGAACAAGATCAAGCAGGAGCGGGCGGCCGAGACGGCTAAAAAGGAACGCACCAAGCAGCAGGAGGACGAGCGCATCCGAATGGAGAACATACTGTCGGGAAATCCGCTGCTGAGCTACTCGGCCACTGCCAAGGCGGAGATGAAGGTAAAGCGCCGCTGGGATGACGATGTGGTGTTTAAAAATTGCGCCCGTTCCGAACCGGAGAAGAAGGCAAACCAATTCGTCAACGACTCGCTCCGGTCAGATTTTCACAAAAAGTTTATGGATAAATATATTAAGTAAGTGGATGATATAATAAATAGT]
[+] EMBL BM624646 [CCGCGGACGCGTGGGCGGACGCGTGGGATCGATATTCCAGCGTCGTAGTAATAGTTTTTGTCGTAAAACAGAATTTACCAACCCACCGACCATGACGACCGCTGCACGTCCAACGTTCGATCCCGCCCGCGGTGGTAGCGGCCGTGGCGAGAAGGATCTGAGTGCCCTTTCCAAACAGTACAGCAGTCGCGATCTGCCAGGACACACAAAGCTAAAGTACCGTGACCAGGGCCAGAGCACCAGCGAAGAGCTCCGCAACCGTGACTTCCGCGAGGAGCTGGAGAAGCGCGAGCGGGACAGCAAGCAGGGAAGCAAGGGATCGGCCGTCCCG ACGGCTCGCCGTGCCCTGGAGCAGGGTCCGGGCAGTGCGGGCAGCGGAAGCAACAAGCGACAGAAACTGGAGGCACCACAAAACCTTGACGCGGACGATCCGGTGGACAGCGAGAACTCGGACACGGACTCGGACGAGGACGATACGGCTGCCCTGTTGGCGGAGCTGAACAAGATCAAGCAGGAGCGGGCGGCCGAGACGGCTAAAAAGGAACGCACCAAGCAGCAGGAGGACGAGCGCATCCGAATGGAGAACATACTGTCGGGAAATCCGCTGCTGAGCTACTCGGCCACTGCCAAGGCGGAGATGA ]
[+] EMBL BM657619 [ ccGATCGATATTCCAGCGTCGTAGTAATAGTTTTTGTCGTAAAACAGAATTTACCAACCCACCGACCATGACGACCGCCGCACGTCCAACGTTCGATCCCGCCCGCGGTGGTAGCGGCCGTGGCGAGAAGGATCTGAGTGCCCTTTCCAAACAGTACAGCAGTCGCGATCTGCCAGGACACACAAAGCTAAAGTACCGTGACCAGGGCCAGAGCACCAGCGAAGAGCTCCGCAACCGTGACTTCCGCGAGGAGCTGGAGAAGCGCGAGCGGGACAGCAAGCAGGGAAGCAAGGGATCGGCCGTCCCG ACGGCTCGCCGTGCCCTGGAGCAGGGTCCGGGCAGTGCGGGCAGCGGAAGCACCAAGCGACAGAAACTGGAGGCACCACAAAACCTTGACGCGGACGATCCGGTGGACAGCGAGAACTCGGACACGGACTCGGACGAGGACGATACGGCTGCCCTGTTGGCGGAGCTGAACAAGATCAAGCAGGAGCGGGCGGCCGAGACGGCTAAAAAGGAACGCACCAAGCAGCAGGAGGACGAGCGCATCCGAATGGAGAACATACTGTCGGGAAATCCGCTGCTGAGCTACTCGGCCACTGCCAAGGCGGAGATGAAGGTAAAGCGCCGCTGGGATGACGATGTGGTGTTTAAAAATTGCGCCCGTTCCGAA ]
[+] EMBL BX612696 [ AAACAGAATTTACCAACCCACCGACCATGACGACCGCTGCACGTCCAACGTTCGATCCCGCCCGCGGTGGTAGCGGCCGTGGCGAGAAGGATCTGAGTGCCCTTTCCAAACAGTACAGCAGTCGCGATCTGCCAGGACACACAAAGCTAAAGTACCGTGACCAGGGCCAGAGCACCAGCGAAGAGCTCCGCAACCGTGACTTCCGCGAGGAGCTGGAGAAGCGCGAGCGGGACAGCAAGCAGGGAAGCAAGGGATCGGCCGTCCCG ACGGCTCGCCGTGCCCTGGAGCAGGGTCCGGGCAGTGCGGGCAGCGGAAGCAACAAGCGACAGAAACTGGAGGCACCACAAAACCTTGACGCGGACGATCCGGTGGACAGCGAGAACTCGGACACGGACTCGGACGAGGACGATACGGCTGCCCTGTTGGCGGAGCTGAACAAGATCAAGCAGGAGCGGGCGGCCGAGACGGCTAAAAAGGAACGCACCAAGCAGCAGGAGGACGAGCGCATCCGAATGGAGAACATACTGTCGGGAAATCCGCTGCTGAGCTACTCGGCCACTGCCAAGGCGGAGATGAAGGTAAAGCGCCGCTGGGATGACGATGTGGTGTTTAAAAATTGCGCCCGTTCCGAACCGGAGAAGAAGGCAAACCAATTCGTCAACGACTCGCTCCGGTCAGATTTTCACAAAAAGTTTATGGATAAATATATTAAGTAAGTGGATGATATAATAAATAGT]
[+] EMBL BM612395 [ ccgGAATTTACCAACCCACCGACCATGACGACCGCCGCACGTCCAACGTTCGATCCCGCCCGCGGTGGTAGCGTCCGTGGCGAGAAGGATCTGAGTGCCCTTTCCAAACAGTACAGCAGTCGCGATCTGCCAGGACACACAAAGCTAAAGTACCGTGACCAGGGCCAGAGCACCAGCGAAGAGCTCCGCAACCGTGACTTCCGCGAGGAGCTGGAGAAGCGCGAGCGGGACAGCAAGCAGGGAAGCAAGGGATCGGCCGTCCCG ACGGCTCGCCGTGCCCTGGAGCAGGGTCCGGGCAGTGCGGGCAGCGGAAGCAACAAGCGACAGAAACTGGAGGCACCACAAAACCTTGACGCGGACGATCCGGTGGACAGCGAGAACTCGGACACGGACTCGGACGAGGACGATACGGCTGCCCTGTTGGCGGAGCTGAACAAGATCAAGCAGGAGCGGGCGGCCGAGACGGCTAAAAAGGAACGCACCAAGCAGCAGGAGGACGAGCGCATCCGAATGGAGAACATACTGTCGGGAAATCCGCTGCTGAGCTACTCGGCCACTGCCAAGGCGGAGATGAAGGTAAAGCGCCGCTGGGATGACGATGTGGTGTTTAAAAATTGCGCCCGTTCCGAACCGGAGAAGAAGGCAAACCAATTCGTCAACGACTCGCTCCGGTCAGATTTTCACAAAAAGTTTATGGATAAA ]
[+] EMBL BM585916 [ ccgCTTCCGCGAGGAGCTGGAGAAGCGCGAGCGGGACAGCAAGCAGGGAAGCAAGGGATCGGCCGTCCCGTACGGCTCGCCGTGCCCTGCAGCAGGGTCCGGGCAGTGCGGGCAGCGGAAGCAACAAGCGACAGAAACTGGAGGCACCACTAAACCTTGACGCGGACGATCCGGTGGACAGCGAGAACTCGGACACGGACTCGGACGAGGACGATACGGCTGCCCTGTTGGCTGAGCTGAACAAGATCATGCAGGAGCGGGCGGCCGAGACGGCTAAAAAGGAACGCACCAAGCAGCACGAGGACGAGCGCATCCGAATGGAGAACATACTGTCGGGAAATCCGCTGCTGAGCTACTCGGCCACTGCCAAGGCGGATATGAAGGTAAAGCGCCGCTGGGATGACCATGTGGTGTTTAAAAATTGCGCCCGTTCCTAACCGGAGAAGAAGGCAAACCAATTCGTCAACGACTCGCTCCGGTCATATTTT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6924#0 -------------AGCAGAATCGCACGA--GGTNTTG----ATCGTAGTAATAGTTTTTG 41
consensus_6924#1 CCGCGGACGCGTGGGCGGACGCGTGGGATCGATATTCCAGCGTCGTAGTAATAGTTTTTG 60
** ** ** ** * * ** ******************
consensus_6924#0 TCGTAAAACAGAATTTACCAACCCACCGACCATGACGACCGCTGCACGTCCAACGTTCGA 101
consensus_6924#1 TCGTAAAACAGAATTTACCAACCCACCGACCATGACGACCGCTGCACGTCCAACGTTCGA 120
************************************************************
consensus_6924#0 TCCCGCCCGCGGTGGTAGCGGC-GTGGCGAGAAGGATCTGAGTGCCCTTTCCAAAGCAGT 160
consensus_6924#1 TCCCGCCCGCGGTGGTAGCGGCCGTGGCGAGAAGGATCTGAGTGCCCTTTCCAAA-CAGT 179
********************** ******************************** ****
consensus_6924#0 GACAGCAGTCGCGATCTGCCAGCGACACACAAAGGCTACACAGTACC-CAGCTGCAACCA 219
consensus_6924#1 -ACAGCAGTCGCGATCTGCCAG-GACACACAAAGCTAA---AGTACCGTGACCAGGGCCA 234
********************* *********** * ****** * ***
consensus_6924#0 AGGGGGCGCAAGGAGGCAACACCAAGGCCGGGAACAAGGGAAAGGCCCTTCCCCGGAGAG 279
consensus_6924#1 ---GAGCACCAGCGAAGAGCTCCGCAACCGTGACTTCCGCGAGGAG------CTGGAGAA 285
* ** * ** * * ** *** ** * * * * *****
consensus_6924#0 AAAAAACCCAGTTNGGAACCTTGATGNCGCCCGGACCGGCGCAACGGGGCACGGCCTTAG 339
consensus_6924#1 GCGCGAGCGGGACAGCAAGCAGGGAAGCAAGGGATCGGCCGTCCCG----ACGGCTCGCC 341
* * * * ** * * * * * * ** ** *****
consensus_6924#0 GTGGCACGGCAAAAATGGCACGGCCCGGGAAAGNCCAGGCAGNGGAAACACCAAGGGGTG 399
consensus_6924#1 GTGCCCTGG-------AGCAGGGTCCGGGCA-GTGCGGGCAGCGGAAGCAACAAGCGACA 393
*** * ** *** ** ***** * * * ***** **** ** **** *
consensus_6924#0 AGAAAGGGCCAANCGCGGNGGAACAAGGCCCAAAAGGGGGGGCAATTTCCCGGCGGCGCC 459
consensus_6924#1 GAAACTG-------GAGGCACCACAAAACCTTGACGCGG--ACGATC------CGGTGGA 438
** * * ** **** ** * * ** * ** *** *
consensus_6924#0 CGGTGTGCCCCCCGGAACCACGGGCGTTAACCGGGNCCCCGGNTTGGTCACCCCATTTGG 519
consensus_6924#1 CAGCGAGAACTCGGA---CACGGACTCGGACGAGGAC---GATACGGCTGCCCTGTTGGC 492
* * * * * * * ***** * ** ** * * ** *** ** *
consensus_6924#0 GGAGCAAAGGCCCATGTATGGGGGTTACCCCCAGAGAGAGAGCCCATGTGTTTGGCCCNG 579
consensus_6924#1 GGAGC---------TGAACAAGATCAAGCA--GGAGCGGGCGGCCGAGA---CGGCTAAA 538
***** ** * * * * *** * * * ** * ***
consensus_6924#0 NGGTGGGCCAATCGGCCAGCGGAACAATGTGCCAAAAACTCCAAAAGGCCCGGAAACCAA 639
consensus_6924#1 AAG-GAACGCACCAAGCAGCAGGAGGACGAGCGCA----TCCGAATGGAGAACATACTGT 593
* * * * * **** * * * * ** * *** ** ** * **
consensus_6924#0 GGGGAAACACAANCCTTGGGCGGAACGGCTGNCCGAAGTCGACCAAANTACAAAAGAAAC 699
consensus_6924#1 CGGGAAATCCGCTGCT-GAGCTACTCGGCCACTGCCAA--GGCGGAGATG-AAGGTAAAG 649
****** * ** * ** **** * * * * * ** ***
consensus_6924#0 CGCCCTTTTTTGGAAAAACGGCCAGCAGTGGTCAAAGCCAGGAAATGTACCCCCACGGAG 759
consensus_6924#1 CGCC----GCTGGGATGACGAT--GTGGTGTTTAAAAATTGCGCCCGTTCCGAACCGGAG 703
**** *** * *** * *** * *** * ** ** *****
consensus_6924#0 GTGTANAGGGAAACCCAAAAGGGCCCGGCAAATGGAACAAAACNTCTTCCCGGGGGAAAC 819
consensus_6924#1 A---AGAAGGCAAACCAATTCG--TCAACGACTCGCTCCGGTCAGATTTTCACAAAAAGT 758
* * ** ** **** * * * * * * * * ** * **
consensus_6924#0 CACAAACCCACGGAGGGAAAGCNTTCCCGGAGGGAAACCTGAANAGTGGGAAACCCGGCG 879
consensus_6924#1 TT---ATGGATAAATATATTAAGTAAGTGGATGATATAATAAATAGT------------- 802
* * * * * *** * * * ** ***
consensus_6924#0 AAATTTAAACCCACCGGGCAATTTNGGGCGCCGCCCCTTTGGGATTATANACGGCGGCCC 939
consensus_6924#1 ------------------------------------------------------------
consensus_6924#0 GGGGAAACCGGCGCTTATGAACAAA 964
consensus_6924#1 -------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||