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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6942#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1334 fasta sequence
[CCGGTTTGCTGCTGTGTTTCGCGCAAAACAAGTGCCAACAAGGGAGGGGGTGGGGTGAAAAGCCCAGCGTACAACCAATTTCGGTGGACCGCGAGCCACACACGGGTCAGACATCAAGCGTGTCTCGAGCGAACCAGTCGTCGTCGTCGGGTCGCCTGGGTCGTCTGGGTCGGTCGCAGGCAGGACACGGTGTGCGTTAGTGTGCCCAAAGGGACAGCGGGAAAGGAAGGAAGTGATTGCGCCAACAAACGCCGTTTCCAGTGCCACCAGCACTGTGTTGTGAGTTTTGCGAGGGGTAGGGAGGTGTACAGTGTACTGGTGAAGCACACCAACATGGAGCAACCATGTGTGGTGCCGGAAATGGACTGATTTCGCTGTGATTTCGGTCCGTTCCGTCCATTTCCGTTTTTGGCTGGATCGATTGCGGTCTAAGGCAATCGCATCGACAAGCGTACGCCGTCGTCACCGTTCGTTCAGCACCGATCGCCATCATCATCATTCTACGCGGCGTAAGTCGTCCGCCGTTCAACAACAGGATGGCAACAGCAACGACCGGACAGCGCCGAACGGCCACAACGATGAGGATGAACCAAAGGCTGCTGGTGCTGGCGCTGGTCGCCCTGCTGGTGGCTGTGGGTGGTGCCCACTCCTACACGGTACCGCGCGATACCGACATCCTGCTAGCGGATGGGTTCTTCAAGCGTATGCGGGACCTGTTTGCCGAGCGCGCGTACGAAGACGCGCTCGGTAGTGGTGGTGCTGCTGCGGGTCCGGTAGAGATGGCGGACGAACCGCCACCGCAAGCGCCGGTCGATACCTCGCATCTAGACAGTCCGCCGAAGCCGAAGCTGGTGGAGGACTGGCCCAAGGTGAAGCACACCTTCGGCCAAGTAACAGCGGTCACGATCGATCTGCAAGGCAACCCGGTCATCTTCCACCGTGGCAGTCGCACATGGACCATGGAGAGCTTCAACGCCACCAACCACTACCAGCACATCGCGGAAGGTCCGATCCCGGAAAACACGATCGCAACCCTGGCCGCCTCGGGACGGGGCCGTGCTGGAAGGAGCGTGGTGCCGGCATTTTCTACATGCCGCACGGGCTCACGATCGACCACAACGGTAACATGTGGCTGACGGACGTGGCACTGCACCAGGTGTTCAAGTTTATGCCCGGTCGGGACTATCCCGCGATTACGCTGGGCCATCGATTCGAGCCTGGCTCGTCCAAGAGCCATCTGTGCAAACCGACGGCCGTGGCGATTGCCAGCACGGGTGAGATCTTCGTCGTGGACGGGTACTGCAACAGCCGGCTGCTCAAGTACAATGCCGCGG]
[+] EMBL BM645776 [CCGGTTTGCTGCTGTGTTTCGCGCAAAACAAGTGCCAACAAGGGAGGGGGTGGGGTGAAAAGCCCAGCGTACAACCAATTTCGGTGGACCGCGAGCCACACACGGGTCAGACATCAAGCGTGTCTCGAGCGAACCAGTCGTCGTCGTCGGGTCGCCTGGGTCGTCTGGGTCGGTCGCAGGCAGGACACGGTGTGCGTTAGTGTGCCCAAAGGGACAGCGGGAAAGGAAGGAAGTGATTGCGCCAACAAACGCCGTTTCCAGTGCCACCAGCACTGTGTTGTGAGTTTTGCGAGGGGTAGGGAGGTGTACAGTGTACTGGTGAAGCACACCAACATGGAGCAACCATGTGTGGTGCCGGAAATGGACTGATTTCGCTGTGATTTCGGTCCGTTCCGTCCATTTCCGTTTTTGGCTGGATCGATTGCGGTCTAAGGCAATCGCATCGACAAGCGTACGCCGTCGTCACCGTTCGTTCAGCACCGATCGCCATCATCATCATTCTACGCGGCGTAAGTCGTCCGCCGTTCAACAACAGGATGGCAACAGCAACGACCGGACAGCGCCGAACGGCCACAACGATGAGGATGAACCAAAGGCTGCTGGTGCTGGCGCTGGTCGCCCTGCTGGTGGCTGTGGGTGGTGCCCACTCCTACACGGTACCGCGCGATACCGACATCCTGCT ]
[+] EMBL BM645053 [ cCGCAAAACAAGTGCCAACAAGGGAGGGGGTGGGGTGAAAAGCCCAGCGTACAACCAATTTCGGTGGACCGCGAGCCACACACGGGTCAGACATCAAGCGTGTCTCGAGCGAACCAGTCGTCGTCGTCGGGTCGCCTGGGTCGTCTGGGTCGGTCGCAGGCAGGACACGGTGTGCGTTAGTGTGCCCAAAGGGACAGCGGGAAAGGAAGGAAGTGATTGCGCCAACAAACGCCGTTTCCAGTGCCACCAGCACTGTGTTGTGAGTTTTGCGAGGGGTAGGGAGGTGTACAGTGTACTGGTGAAGCACACCAACATGGAGCAACCATGTGTGGTGCCGGAAATGGACTGATTTCGCTGTGATTTCGGTCCGTTCCGTCCATTTCCGTTTTTGGCTGGATCGATTGCGGTCTAAGGCAATCGCATCGACAAGCGTACGCCGTCGTCACCGTTCGTTCAGCACCGATCGCCATCATCATCATTCTACGCGGCGTAAGTCGTCC ]
[+] EMBL BM614373 [ CCGCAACGATGAGGATGAACCAAATGCTGCCGGTGCTGGCGCTGGTCGCCCTGCTGGTGGCTGTGGGTGGTGCCCACTCCTATACGGTACCGCGCGATACCGACATCCTGCTAGCGGATGGGTTCTTCAAGCGTATGCGGGACCTGTTTGCCGAGCGCGCGTACGAAGACGCGCTCGGTAGTGGTGGTGCTGCTGCGGGTCCGGTAGAGATGGCGGACGAACCGCCACCGCAAGCGCCGGTCGATACCTCGCATCTAGACAGTCCGCCGAAGCCGAAGCTGGTGGAGGACTGGCCCAAGGTGAAGCACACCTTCGGCCAAGTAACAGCGGTCACGATCGATCTGCAAGGCAACCCGGTCATCTTCCACCGTGGCAGTCGCACATGGACCATGGAGAGCTTCAACGCCACCAACCACTACCAGCACATCGCGGAAGGTCCGATCCCGGAAAACACGATCGCAACCCTGGCCGCCTCGGGACGGGGCCGTGCTGGAAGGAGCGTGGTGCCGGCATTTTCTACATGCCGCACGGGCTCACGATCGACCACAACGGTAACATGTGGCTGACGGACGTGGCACTGCACCAGGTGTTCAAGTTTATGCCCGGTCGGGACTAT ]
[+] EMBL BM631996 [ cCGGGACGGGGCCGTGCTGG AGGAGCGTGGTGCCGGCATTTTCTACATGCCGCACGGGCTCACGATCGACCACAACGGTAACATGTGGCTGACGGACGTGGCACTGCACCAGGTGTTCAAGTTTATGCCCGGTCGGGACTATCCCGCGATTACGCTGGGCCATCGATTCGAGCCTGGCTCGTCCAAGAGCCATCTGTGCAAACCGACGGCCGTGGCGATTGCCAGCACGGGTGAGATCTTCGTCGTGGACGGGTACTGCAACAGCCGGCTGCTCAAGTACAATGCCGCGG]
consensusID : consensus_6942#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 643 fasta sequence
[CCGCGGACGCGTGGGTTGCGGTCTAAGGCAATCGCAGCGTACAAGCGTACGCCGTCGTCACATCGTTCAGCACCGATCGCCATCATCATCATCATTCTACGCGGCGTAAGTCGTCCGCCGTTCAACAGCAGGATGGCAACAGCAACGACCGGACAGCGCCGAACGGCCACAACGATGAGGATGAACCAAATGCTGCCGGTGCTGGCGCTGGTCGCCCTGCTGGTGGCTGTGGGTGGTGCCCACTCCTATACGGTACCGCGCGATACCGACATCCTGCTAGCGGATGGGTTCTTCAAGCGTATGCGGGACCTGTTTGCCGAGCGCGCGTACGAAGACGCGCTCGGTAGTGGTGGTGCTGCTGCGGGTCCGGTAGAGATGGCGGACGAACCGCCACCGCAAGCGCCGGTCGATACCTCGCATCTAGACAGTCCGCCGAAGCCGAAGCTGGTGGAGGACTGGCCCAAGGTGAAGCACACCTTCGGCCAAGTAACAGCGGTCACGATCGATCTGCAAGGCAACCCGGTCATCTTCCACCGTGGCAGTCGCACATGGACCATGGAGAGCTTCAACGCCACCAACCACTACCAGCACATCGCGGAAGGTCCGATCCCGGAAAACACGATCGCAACCCTGGCCGCCTCGG]
[+] EMBL BM624753 [CCGCGGACGCGTGGGTTGCGGTCTAAGGCAATCGCAGCGTACAAGCGTACGCCGTCGTCACATCGTTCAGCACCGATCGCCATCATCATCATCATTCTACGCGGCGTAAGTCGTCCGCCGTTCAACAGCAGGATGGCAACAGCAACGACCGGACAGCGCCGAACGGCCACAACGATGAGGATGAACCAAATGCTGCCGGTGCTGGCGCTGGTCGCCCTGCTGGTGGCTGTGGGTGGTGCCCACTCCTATACGGTACCGCGCGATACCGACATCCTGCTAGCGGATGGGTTCTTCAAGCGTATGCGGGACCTGTTTGCCGAGCGCGCGTACGAAGACGCGCTCGGTAGTGGTGGTGCTGCTGCGGGTCCGGTAGAGATGGCGGACGAACCGCCACCGCAAGCGCCGGTCGATACCTCGCATCTAGACAGTCCGCCGAAGCCGAAGCTGGTGGAGGACTGGCCCAAGGTGAAGCACACCTTCGGCCAAGTAACAGCGGTCACGATCGATCTGCAAGGCAACCCGGTCATCTTCCACCGTGGCAGTCGCACATGGACCATGGAGAGCTTCAACGCCACCAACCACTACCAGCACATCGCGGAAGGTCCGATCCCGGAAAACACGATCGCAACCCTGGCCGCCTCGG]
consensusID : consensus_6942#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 604 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGTTCCATGTTGTTAAACATATGGTATCCCTTTCCCTTGGTGTTAACAGGGAACATCACCATCGGTAGAGCTTTAAAGCCAGCTAAAAACCTTCACCATTCTCCGTAGTTCTAATTTTGTTCGATTGTTTTTCTTTCCCGTTTATTTCTTTACGGTTTCGATACGGGACGCGGCACCCGTTCGCAGAATCGCATCGACAAGCGTACGCCGTCGTCACCGTTCGTTCAGCACCGATCGCCATCATCATCATTCTACGCGGCGTAAGTCGTCCGCCGTTCAACAACAGGATGGCAACAGCAACGACCGGACAGCGCCGAACGGCCACAACGATGAGGATGAACCAAAGGCTGCTGGTGCTGGCGCTGGTCGCCCTGCTGGTGGCTGTGGGTGGTGCCCACTCCTACACGGTACCGCGCGATACCGACATCCTGCTAGCGGATGGGTTCTTCAAGCGTATGCGGGACCTGTTTGCCGAGCGCGCGTACGAAGATGCGCTCGGTGGTGGTGCTGCTGCCGGTCCGGCGGAGATGGCGGACGAACCGCCACCGCAAGCGCCGGTCGATACCTCGCATCTGGAC]
[+] EMBL BM644250 [CCGCCCACGCGTCCGCCCACGCGTCCGGTTCCATGTTGTTAAACATATGGTATCCCTTTCCCTTGGTGTTAACAGGGAACATCACCATCGGTAGAGCTTTAAAGCCAGCTAAAAACCTTCACCATTCTCCGTAGTTCTAATTTTGTTCGATTGTTTTTCTTTCCCGTTTATTTCTTTACGGTTTCGATACGGGACGCGGCACCCGTTCGCAGAATCGCATCGACAAGCGTACGCCGTCGTCACCGTTCGTTCAGCACCGATCGCCATCATCATCATTCTACGCGGCGTAAGTCGTCCGCCGTTCAACAACAGGATGGCAACAGCAACGACCGGACAGCGCCGAACGGCCACAACGATGAGGATGAACCAAAGGCTGCTGGTGCTGGCGCTGGTCGCCCTGCTGGTGGCTGTGGGTGGTGCCCACTCCTACACGGTACCGCGCGATACCGACATCCTGCTAGCGGATGGGTTCTTCAAGCGTATGCGGGACCTGTTTGCCGAGCGCGCGTACGAAGATGCGCTCGGTGGTGGTGCTGCTGCCGGTCCGGCGGAGATGGCGGACGAACCGCCACCGCAAGCGCCGGTCGATACCTCGCATCTGGAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6942#0 CCGGTTTGCTGCTGTGTTTCGCGCAAAACAAGTGCCAACAAGGGAGGGGGTGGGGTGAAA 60
consensus_6942#1 ------------------------------------------------------------
consensus_6942#2 ------------------------------------------------------------
consensus_6942#0 AGCCCAGCGTACAACCAATTTCGGTGGACCGCGAGCCACACACGGGTCAGACATCAAGCG 120
consensus_6942#1 ------------------------------------------------------------
consensus_6942#2 ------------------------------------------------------------
consensus_6942#0 TGTCTCGAGCGAACCAGTCGTCGTCGTCGGGTCGCCTGGGTCGTCTGGGTCGGTCGCAGG 180
consensus_6942#1 ------------------------------------------------------------
consensus_6942#2 ------------------------------------------------------------
consensus_6942#0 CAGGACACGGTGTGCGTTAGTGTGCCCAAAGGGACAGCGGGAAAGGAAGGAAGTGATTGC 240
consensus_6942#1 ------------------------------------------------------------
consensus_6942#2 ------------------------------------------------CCGCCCACGCGT 12
consensus_6942#0 GCCAACAAACGCCGTTTCCAGTGCCACCAGCACTGTGTTGTGAGTTTTGCGAGGGGTAGG 300
consensus_6942#1 ------------------------------------------------------------
consensus_6942#2 CCGCCCACGCGTCCGGTTCCATGTTGTTAAACATATGGTATCCCTTTCCCTTGGTGTTAA 72
consensus_6942#0 GAGGTGTACAGTGTACTGGTGAAGCACACCAACATGGAGCAACCATGTGTGGTGCCGGAA 360
consensus_6942#1 ------------------------------------------------------------
consensus_6942#2 CAGGGAACATCACCATCGGTAGAGCTTTAAAGCCAGCTAAAAACCTTCACCATTCTCCGT 132
consensus_6942#0 ATGGACTGATTTCGCTGTGATTTCGGTCCGTTCCGTCCATTTCCGTTTTTGGCTG-GATC 419
consensus_6942#1 ----------------------------------------------CCGCGGACG-CGTG 13
consensus_6942#2 A-GTTCTAATTTTGTTCGATTGTTTTTCTTTCCCGTTTATTTCTTTACGGTTTCGATACG 191
*
consensus_6942#0 GATTGCGGT-----CTAAGGCAATCGCATCG-ACAAGCGTACGCCGTCGTCACCGTTCGT 473
consensus_6942#1 GGTTGCGGT-----CTAAGGCAATCGCAGCGTACAAGCGTACGCCGTCGTCAC--ATCGT 66
consensus_6942#2 GGACGCGGCACCCGTTCGCAGAATCGCATCG-ACAAGCGTACGCCGTCGTCACCGTTCGT 250
* **** * ******* ** ********************* ****
consensus_6942#0 TCAGCACCGATCGCCATCATCATCAT---TCTACGCGGCGTAAGTCGTCCGCCGTTCAAC 530
consensus_6942#1 TCAGCACCGATCGCCATCATCATCATCATTCTACGCGGCGTAAGTCGTCCGCCGTTCAAC 126
consensus_6942#2 TCAGCACCGATCGCCATCATCATCAT---TCTACGCGGCGTAAGTCGTCCGCCGTTCAAC 307
************************** *******************************
consensus_6942#0 AACAGGATGGCAACAGCAACGACCGGACAGCGCCGAACGGCCACAACGATGAGGATGAAC 590
consensus_6942#1 AGCAGGATGGCAACAGCAACGACCGGACAGCGCCGAACGGCCACAACGATGAGGATGAAC 186
consensus_6942#2 AACAGGATGGCAACAGCAACGACCGGACAGCGCCGAACGGCCACAACGATGAGGATGAAC 367
* **********************************************************
consensus_6942#0 CAAAGGCTGCTGGTGCTGGCGCTGGTCGCCCTGCTGGTGGCTGTGGGTGGTGCCCACTCC 650
consensus_6942#1 CAAATGCTGCCGGTGCTGGCGCTGGTCGCCCTGCTGGTGGCTGTGGGTGGTGCCCACTCC 246
consensus_6942#2 CAAAGGCTGCTGGTGCTGGCGCTGGTCGCCCTGCTGGTGGCTGTGGGTGGTGCCCACTCC 427
**** ***** *************************************************
consensus_6942#0 TACACGGTACCGCGCGATACCGACATCCTGCTAGCGGATGGGTTCTTCAAGCGTATGCGG 710
consensus_6942#1 TATACGGTACCGCGCGATACCGACATCCTGCTAGCGGATGGGTTCTTCAAGCGTATGCGG 306
consensus_6942#2 TACACGGTACCGCGCGATACCGACATCCTGCTAGCGGATGGGTTCTTCAAGCGTATGCGG 487
** *********************************************************
consensus_6942#0 GACCTGTTTGCCGAGCGCGCGTACGAAGACGCGCTCGGTAGTGGTGGTGCTGCTGCGGGT 770
consensus_6942#1 GACCTGTTTGCCGAGCGCGCGTACGAAGACGCGCTCGGTAGTGGTGGTGCTGCTGCGGGT 366
consensus_6942#2 GACCTGTTTGCCGAGCGCGCGTACGAAGATGCGCTCGGT---GGTGGTGCTGCTGCCGGT 544
***************************** ********* ************** ***
consensus_6942#0 CCGGTAGAGATGGCGGACGAACCGCCACCGCAAGCGCCGGTCGATACCTCGCATCTAGAC 830
consensus_6942#1 CCGGTAGAGATGGCGGACGAACCGCCACCGCAAGCGCCGGTCGATACCTCGCATCTAGAC 426
consensus_6942#2 CCGGCGGAGATGGCGGACGAACCGCCACCGCAAGCGCCGGTCGATACCTCGCATCTGGAC 604
**** ************************************************** ***
consensus_6942#0 AGTCCGCCGAAGCCGAAGCTGGTGGAGGACTGGCCCAAGGTGAAGCACACCTTCGGCCAA 890
consensus_6942#1 AGTCCGCCGAAGCCGAAGCTGGTGGAGGACTGGCCCAAGGTGAAGCACACCTTCGGCCAA 486
consensus_6942#2 ------------------------------------------------------------
consensus_6942#0 GTAACAGCGGTCACGATCGATCTGCAAGGCAACCCGGTCATCTTCCACCGTGGCAGTCGC 950
consensus_6942#1 GTAACAGCGGTCACGATCGATCTGCAAGGCAACCCGGTCATCTTCCACCGTGGCAGTCGC 546
consensus_6942#2 ------------------------------------------------------------
consensus_6942#0 ACATGGACCATGGAGAGCTTCAACGCCACCAACCACTACCAGCACATCGCGGAAGGTCCG 1010
consensus_6942#1 ACATGGACCATGGAGAGCTTCAACGCCACCAACCACTACCAGCACATCGCGGAAGGTCCG 606
consensus_6942#2 ------------------------------------------------------------
consensus_6942#0 ATCCCGGAAAACACGATCGCAACCCTGGCCGCCTCGGGACGGGGCCGTGCTGGAAGGAGC 1070
consensus_6942#1 ATCCCGGAAAACACGATCGCAACCCTGGCCGCCTCGG----------------------- 643
consensus_6942#2 ------------------------------------------------------------
consensus_6942#0 GTGGTGCCGGCATTTTCTACATGCCGCACGGGCTCACGATCGACCACAACGGTAACATGT 1130
consensus_6942#1 ------------------------------------------------------------
consensus_6942#2 ------------------------------------------------------------
consensus_6942#0 GGCTGACGGACGTGGCACTGCACCAGGTGTTCAAGTTTATGCCCGGTCGGGACTATCCCG 1190
consensus_6942#1 ------------------------------------------------------------
consensus_6942#2 ------------------------------------------------------------
consensus_6942#0 CGATTACGCTGGGCCATCGATTCGAGCCTGGCTCGTCCAAGAGCCATCTGTGCAAACCGA 1250
consensus_6942#1 ------------------------------------------------------------
consensus_6942#2 ------------------------------------------------------------
consensus_6942#0 CGGCCGTGGCGATTGCCAGCACGGGTGAGATCTTCGTCGTGGACGGGTACTGCAACAGCC 1310
consensus_6942#1 ------------------------------------------------------------
consensus_6942#2 ------------------------------------------------------------
consensus_6942#0 GGCTGCTCAAGTACAATGCCGCGG 1334
consensus_6942#1 ------------------------
consensus_6942#2 ------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||