cluster # 6957

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Anopheles gambiae
cluster # 6957 cluster # 6957 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6957#0 length = 985 sequences # 4

consensus_6957#1 length = 557 sequences # 1
consensus_6957#2 length = 483 sequences # 1

consensusID : consensus_6957#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 985
fasta sequence

                              [ATTAGCATTACTTAAAATGAAAAGCTACGGCCAAGAAATAGAAATTACGTATTTAAATAGGCAACCATTATTGTTTTGTCAAAACCAAATCATGTAGAATACATTTCGGAACATGAAAAATATATTAACACACTAATAACCCATCTGTGGATATGCGAAACCACTAACAATTACATTTAATGAACTAAATCGTGTGAAGATTAAACAATTGTACTCGAACTTTATACAAATAGTACCAAAACATTGACTTAGCTGAAGCATCGAACTCATCGGTCAACCGTGGAAGTGGATAACTGGCAGTCCAGGTCGCTGAATATTTGCGTCTGATTAACGCAACAATGAACAAGCTGGTTGACGGCAACGACCTCCAATTTAGAATCAATGAGAGCAGTTTAACAAACGTTTGCAATCCTCACCAACTCCAAAGACGAGATAATCAAGAGAAAACATCCGCATTCTACTGACATTGAAGCTATCAAGAGCCCATATTTAACATCAACGGCATGATTCACCTCATAGAATTCATCCAAAACACAGCAGTTTGGGTACACGAATCTGTTACCAACAGTAAACTCCTCACAGCACCACACGAGATGAGTTTGATACGTTCCACACTAGCAGAACAAGGCGCCGTGATAGACATTCCCAGTACATCCCAGTTAGAAACAGAACAAGCTTCAGAGCTATAGCTGAACATCTAATATTACTGAATAATGGTAACAGCATCAGCTAACGGAGCAAATGCGTTCCTAACAATAGAACAATCCAT-GGGATCTATTTGATCCATGG-GAGTTCTCCAACTGCACAGTTATAATTGGGAAAGATACACCTTCTCATCAAAAACGCCTTCGATTACATCGGAACCATATTGAGTGCCCAAGCAGCAATACCGCCAAATACCAATAACCTTTGGCAACAATGTCATTAATAGGATACGTTAAGCTTCTGCAATTCAGCAACATCGATTACTGGAAGTGGAGTATAC]

[+] EMBL AGA282901            [ATTAGCATTACTTAAAATGAAAAGCTACGGCCAAGAAATAGAAATTACGTATTTAAATAGGCAACCATTATTGTTTTGTCAAAACCAAATCATGTAGAATACATTTCGGAACATGAAAAATATATTAACACACTAATAACCCATCTGTGGATATGCGAAACCACTAACAATTACATTTAATGAACTAAATCGTGTGAAGATTAAACAATTGTACTCGAACTTTATACAAATAGTACCAAAACATTGACTTAGCTGAAGCATCGAACTCATCGGTCAACCGTGGAAGTGGATAACTGGCAGTCCAGGTCGCTGAATATTTGCGTCTGATTAACGCAACAATGAACAAGCTGGTTGACGGCAACGACCTCCAATTTAGAATCAATGAGAGCAGTTTAACAAACGTTTGCAATCCTCACCAACTCCAAAGACGAGATAATCAAGAGAAAACATCCGCATTCTACTGACATTGAAGCTATCAAGAGCCCATATTTAACATCAACGGCATGATTCACCTCATAGAATTCATCC AAACACAGCAGTTTGGGTACACGAATCTGTTACCAACAGTAAACTCCTCACAGCACCACACGAGATGAGTTTGATACGTTCCACACTAGCAGAACAAGGCGCCGTGATAGACATTCCCAGTACATCCCAGTTAGAAACAGAACAAGCTTCAGAGCTATAGCTGAACATCTAATATTACTGAATAATGGTAACAGCATCAGCTAACGGAGCAAATGCGTTCCTAACAATAGAACCATCCAT GG                                                                                                                                                                                                                       ]
[+] EMBL BM653149             [                                                                                                                                                         ccgGAAACAACTAACAATTACATTTAATGAACTAAATCGTGTGAAGATTAAACAATTGTACTCGAACTTTATACAAATAGTACCAAAACATTGACTTAGCTGAAGCATCGAACTCATCGGTCAACCGTGGAAGTGGATAACTGGCAGTCCAGGTCGCTGAATATTTGCGTCTGATTAACGCAACAATGAACAAGCTGGTTGACGGCAACGACCTCCAATTTAGAATCAATGAGAGCAGTTTAACAAACGTTTGCAATCCTCACCAACTCCAAAGACGAGATAATCAAGAGAAAACATCCGCATTCTACTGACATTGAAGCTATCAAGAGCCCATATTTAACATCAACGGCATGATTCACCTCATAGAATTCATCCAAAACACAGCAGTTTGGGTACACGAATCTGTTACCAACAGTAAACTCCTCACAGCACCACACGAGATGAGTTTGATACGTTCCACACTAGCAGAACAAGGCGCCGTGATAGACATTCCCAGTACATCCTAGTTAGAAACAGAACAAGCTTCAAAGCTGTAGCTGAACATCTAATATTACTGAATAATGGTAACAGCATCAGCTAACGGAGCAAATGCGTTCCTAACAATAGAACAATCCATGGGGATCTATTTGATCCATGGAGAGTTCTCCAAATGCACAGTTATAATTGGGA                                                                                                                                                                     ]
[+] EMBL BX607575             [                                                                                                                                                                                                                                   AAATAGTACCAAAACATTGACTTAGCTGAAGCATCGAACTCATCGGTCAACCGTGGAAGTGGATAACTGGCAGTCCAGGTCGTTGAATATTTGCGTCTGATTAACGCAACAATGAACAAGCTGGTTGACGGCAACGACCTCCAATTTAGAATCAATGAGAGCAGTTTAACAAACGTTTGCAATCCTCACCAACTCCAAAGACGAGATAATTAAGAGAAAACATCCGCATTCTACTGACATTGAAGCTATCAATAGCCCATATTTAACATCAACGGCATGATTCACCTCATAGAATTCATCCAAAACACAGCAGTTTGGGTACACGAATCTGTTACCAACAGTAAACTCCTCACAGCACCACACGAGATGAGTTTGATACGTTCCACACTACCAGAACAAGGCGCCGGGATAGACATTCCCAGTACATCCCAGTTAGAAACAGAACAAGCTTCAGAGCTGTAGCTGAACATCTAATATTACTGAATAATGGTAACAGCATCAGCTAACGGAGCAAATGCGTTCCTAACAATAGAACAATCCAT GGGATCTATTTGATCCATGG GAGTTCTCCAACTGCACAGTTATAATTGGGAAAGATACACCTTCTCATCAAAAACGCCTTCGATTACATCGGAACCATATTGAGTGCCCAAGCAGCAATACCGCCAAATACCAATAACCTTTGGCAACAATGTCATTAATAGGATACGTTAAGCTTCTGCAATTCAGCAACATCGATTACTGGAAGTGGAGTATAC]
[+] EMBL BX617869             [                                                                                                                                                                                                                                                                                                                                                                                                                                                            AAACATCCGCATTCTACTGACATTGAAGCTATCAAGAGCCCATATTTAACATCAACGGCATGATTCACCTCATAGAATTCATCCAAAACACAGCAGTTTGGGTACACGAATCTGTTACCAACAGTAAACTCCTCACAGCACCACACGAGATGAGTTTGATACGTTCCACACTAGCAGAACAAGGCGCCGTGATAGACATTCCCAGTACATCCCAGTTAGAAACAGAACAAGCTTCAGAGCTATAGCTGAACATCTAATATTACTGAATAATGGTAACAGCATCAGCTAACGGAGCAAATGCGTTCCTAACAATAGAACAATCCAT GGGATCTATTTGATCCATGG GAGTTCTCCAACTGCACAGCTATAATTGGGAAAGAca                                                                                                                                                               ]




>consensus_6957#0
ATTAGCATTACTTAAAATGAAAAGCTACGGCCAAGAAATAGAAATTACGTATTTAAATAG
GCAACCATTATTGTTTTGTCAAAACCAAATCATGTAGAATACATTTCGGAACATGAAAAA
TATATTAACACACTAATAACCCATCTGTGGATATGCGAAACCACTAACAATTACATTTAA
TGAACTAAATCGTGTGAAGATTAAACAATTGTACTCGAACTTTATACAAATAGTACCAAA
ACATTGACTTAGCTGAAGCATCGAACTCATCGGTCAACCGTGGAAGTGGATAACTGGCAG
TCCAGGTCGCTGAATATTTGCGTCTGATTAACGCAACAATGAACAAGCTGGTTGACGGCA
ACGACCTCCAATTTAGAATCAATGAGAGCAGTTTAACAAACGTTTGCAATCCTCACCAAC
TCCAAAGACGAGATAATCAAGAGAAAACATCCGCATTCTACTGACATTGAAGCTATCAAG
AGCCCATATTTAACATCAACGGCATGATTCACCTCATAGAATTCATCCAAAACACAGCAG
TTTGGGTACACGAATCTGTTACCAACAGTAAACTCCTCACAGCACCACACGAGATGAGTT
TGATACGTTCCACACTAGCAGAACAAGGCGCCGTGATAGACATTCCCAGTACATCCCAGT
TAGAAACAGAACAAGCTTCAGAGCTATAGCTGAACATCTAATATTACTGAATAATGGTAA
CAGCATCAGCTAACGGAGCAAATGCGTTCCTAACAATAGAACAATCCATGGGATCTATTT
GATCCATGGGAGTTCTCCAACTGCACAGTTATAATTGGGAAAGATACACCTTCTCATCAA
AAACGCCTTCGATTACATCGGAACCATATTGAGTGCCCAAGCAGCAATACCGCCAAATAC
CAATAACCTTTGGCAACAATGTCATTAATAGGATACGTTAAGCTTCTGCAATTCAGCAAC
ATCGATTACTGGAAGTGGAGTATAC

consensusID : consensus_6957#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 557
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGTCTGAAACAACGTTAAGCTTCTGCAATTCAGCAACATCGATTACTGGAAGTGGAGTATACCGGGAGGAACACTGAATACCATCGTAACAATGCTTACGTTCACATTTTACCTCGTTATTTACTGCAGAAGAACAATAGGGACCATCGATAGAGCATTAAACTCTAAGAAAAGGCGAATCGCAAAGCGATACCTTAAACGCGTCTTCACCCGCCGGAGGAGTTACGTGCCCAGCTACTGCCACGTGTGCACGCGCTCCCCAGCAACAGTAACGCAACACCAATGTGCTGCGTATCCGGCAACAGCAACCTGATTGCTAACCTGACGCATAATCGATCGAACCAGCCAACAAGCCAGCCAACCAGCCAGCCAACCAGCCAGCCAACCAGCCATCCAACCAGCCATCCAACCAGCCAGCCAACCAGCCAGCCAACCAGCCAGCCAACCAGCCAGCCATCCAGCTAGTCAACCGACCCGTCAGCGAGCCAACAGTTCGTGAAACACTCCATGAGTAAAGAATAAAGTTTTGTTT]

[+] EMBL BM582734             [CCGCCCACGCGTCCGCCCACGCGTCCGTCTGAAACAACGTTAAGCTTCTGCAATTCAGCAACATCGATTACTGGAAGTGGAGTATACCGGGAGGAACACTGAATACCATCGTAACAATGCTTACGTTCACATTTTACCTCGTTATTTACTGCAGAAGAACAATAGGGACCATCGATAGAGCATTAAACTCTAAGAAAAGGCGAATCGCAAAGCGATACCTTAAACGCGTCTTCACCCGCCGGAGGAGTTACGTGCCCAGCTACTGCCACGTGTGCACGCGCTCCCCAGCAACAGTAACGCAACACCAATGTGCTGCGTATCCGGCAACAGCAACCTGATTGCTAACCTGACGCATAATCGATCGAACCAGCCAACAAGCCAGCCAACCAGCCAGCCAACCAGCCAGCCAACCAGCCATCCAACCAGCCATCCAACCAGCCAGCCAACCAGCCAGCCAACCAGCCAGCCAACCAGCCAGCCATCCAGCTAGTCAACCGACCCGTCAGCGAGCCAACAGTTCGTGAAACACTCCATGAGTAAAGAATAAAGTTTTGTTT]




>consensus_6957#1
CCGCCCACGCGTCCGCCCACGCGTCCGTCTGAAACAACGTTAAGCTTCTGCAATTCAGCA
ACATCGATTACTGGAAGTGGAGTATACCGGGAGGAACACTGAATACCATCGTAACAATGC
TTACGTTCACATTTTACCTCGTTATTTACTGCAGAAGAACAATAGGGACCATCGATAGAG
CATTAAACTCTAAGAAAAGGCGAATCGCAAAGCGATACCTTAAACGCGTCTTCACCCGCC
GGAGGAGTTACGTGCCCAGCTACTGCCACGTGTGCACGCGCTCCCCAGCAACAGTAACGC
AACACCAATGTGCTGCGTATCCGGCAACAGCAACCTGATTGCTAACCTGACGCATAATCG
ATCGAACCAGCCAACAAGCCAGCCAACCAGCCAGCCAACCAGCCAGCCAACCAGCCATCC
AACCAGCCATCCAACCAGCCAGCCAACCAGCCAGCCAACCAGCCAGCCAACCAGCCAGCC
ATCCAGCTAGTCAACCGACCCGTCAGCGAGCCAACAGTTCGTGAAACACTCCATGAGTAA
AGAATAAAGTTTTGTTT

consensusID : consensus_6957#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 483
fasta sequence

                              [CACATCAAAAACGCCTTCGATTACATCGGAATCATATTGAGTGCCCAAGCAGCAATACCGCCAAATACCAATAACCTTTGGCAACAATGTCATTAATAGGATGATTCTGGAACAACGTAAAGCTTCTGCAATTCAGCAACATCGATTACTGGAAGTGGAGTATACCGGGAGGAACACTGAATCCCATCGTAACAATGCTTACGTTCACATTTTACCTCGTTATTTACTGCAGAAGAACAATAGGGACCATCGATAGAGCATTAAACTCTAAGAAAAGGCGAATCGCAAAGCGATACCTTAAACGCGTCTTCACCCGCCGGAGGAGTTACGTGCCCAGCTACTGCCACGTGTGCACGCGCTCCCCAGCAACAGTAACGCAACACCAATGTGCTGCGTATCCGGCAACAGCAACCTGATTGCTAACCTGACGCATAATCGATCGAACCAGCCAACAAGCCAGCCAACCAGCCAGCCAACCAGCCA]

[+] EMBL BX609507             [CACATCAAAAACGCCTTCGATTACATCGGAATCATATTGAGTGCCCAAGCAGCAATACCGCCAAATACCAATAACCTTTGGCAACAATGTCATTAATAGGATGATTCTGGAACAACGTAAAGCTTCTGCAATTCAGCAACATCGATTACTGGAAGTGGAGTATACCGGGAGGAACACTGAATCCCATCGTAACAATGCTTACGTTCACATTTTACCTCGTTATTTACTGCAGAAGAACAATAGGGACCATCGATAGAGCATTAAACTCTAAGAAAAGGCGAATCGCAAAGCGATACCTTAAACGCGTCTTCACCCGCCGGAGGAGTTACGTGCCCAGCTACTGCCACGTGTGCACGCGCTCCCCAGCAACAGTAACGCAACACCAATGTGCTGCGTATCCGGCAACAGCAACCTGATTGCTAACCTGACGCATAATCGATCGAACCAGCCAACAAGCCAGCCAACCAGCCAGCCAACCAGCCA]




>consensus_6957#2
CACATCAAAAACGCCTTCGATTACATCGGAATCATATTGAGTGCCCAAGCAGCAATACCG
CCAAATACCAATAACCTTTGGCAACAATGTCATTAATAGGATGATTCTGGAACAACGTAA
AGCTTCTGCAATTCAGCAACATCGATTACTGGAAGTGGAGTATACCGGGAGGAACACTGA
ATCCCATCGTAACAATGCTTACGTTCACATTTTACCTCGTTATTTACTGCAGAAGAACAA
TAGGGACCATCGATAGAGCATTAAACTCTAAGAAAAGGCGAATCGCAAAGCGATACCTTA
AACGCGTCTTCACCCGCCGGAGGAGTTACGTGCCCAGCTACTGCCACGTGTGCACGCGCT
CCCCAGCAACAGTAACGCAACACCAATGTGCTGCGTATCCGGCAACAGCAACCTGATTGC
TAACCTGACGCATAATCGATCGAACCAGCCAACAAGCCAGCCAACCAGCCAGCCAACCAG
CCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6957#1      ------------------------------------------------------------
consensus_6957#2      ------------------------------------------------------------
consensus_6957#0      ATTAGCATTACTTAAAATGAAAAGCTACGGCCAAGAAATAGAAATTACGTATTTAAATAG 60
                                                                                  

consensus_6957#1      ------------------------------------------------------------
consensus_6957#2      ------------------------------------------------------------
consensus_6957#0      GCAACCATTATTGTTTTGTCAAAACCAAATCATGTAGAATACATTTCGGAACATGAAAAA 120
                                                                                  

consensus_6957#1      ------------------------------------------------------------
consensus_6957#2      ------------------------CACATCAAAAACGCCTTCGATTACATCGGAATCATA 36
consensus_6957#0      TATATTAACACACTAATAACCCATCTGTGGATATGCGAAACCACTAACAATTACATTTAA 180
                                                                                  

consensus_6957#1      -----------------------------------------CCGCCCACGCGTCCGCCCA 19
consensus_6957#2      TTGAGTGCCCAAGCAGCAATACCGCCAAATACCAATAACCTTTGGCAACAATGTCATTAA 96
consensus_6957#0      TGAACTAAATCGTGTGAAGATTAAACAATTGTACTCGAACTTTATACAAATAGT-ACCAA 239
                                                                     *           *

consensus_6957#1      CGCGTCCGT-CTGAAACAACGTTAAGCT--TCTGCAATTCAGCAACATCGATTACTGGAA 76
consensus_6957#2      TAGGATGATTCTGGAACAACGTAAAGCT--TCTGCAATTCAGCAACATCGATTACTGGAA 154
consensus_6957#0      AACATTGACTTAGCTGAAGCATCGAACTCATCGGTCAACCGTGGAAGTGGATAACTGGCA 299
                                  *    * * *  * **  ** *  *  *    *  * *** ***** *

consensus_6957#1      GTGGAGTATACCGGG-AGGAACACTGAATACCATCGTAACAATGCTTACGTTCACATTTT 135
consensus_6957#2      GTGGAGTATACCGGG-AGGAACACTGAATCCCATCGTAACAATGCTTACGTTCACATTTT 213
consensus_6957#0      GTCCAGGTCGCTGAATATTTGCGTCTGAT--TAACGCAACAATGAACAAGCTGGTTGACG 357
                      **  **    * *   *    *     **   * ** *******   * * *        

consensus_6957#1      ACCTCGTTATTTACTGCAGAAGAACAATAGGGACCATCGATAGAGCATT---AAACTCTA 192
consensus_6957#2      ACCTCGTTATTTACTGCAGAAGAACAATAGGGACCATCGATAGAGCATT---AAACTCTA 270
consensus_6957#0      GCAACGACCTCCAATTTAGAAT--CAATGAGAGCAGTTTAACAAACGTTTGCAATCCTCA 415
                       *  **   *  * *  ****   ****  *  *  *  *   * * **   ** *   *

consensus_6957#1      AGAA-----AAGGCGA-ATCGCAAAGCGATACCTTAAACGCGTCTTCACCCGCCGGAGGA 246
consensus_6957#2      AGAA-----AAGGCGA-ATCGCAAAGCGATACCTTAAACGCGTCTTCACCCGCCGGAGGA 324
consensus_6957#0      CCAACTCCAAAGACGAGATAATCAAGAGAAAACATCCGCAT-TCTACTGACATTGAAGCT 474
                        **     *** *** **    *** ** * * *   *   *** *   *   * **  

consensus_6957#1      GTTACGTGCCCAGCTACTGCCACGTGTGCACGCGCTCCCCAGCAACAGTAACGCAACAC- 305
consensus_6957#2      GTTACGTGCCCAGCTACTGCCACGTGTGCACGCGCTCCCCAGCAACAGTAACGCAACAC- 383
consensus_6957#0      ATCAAGAGCCCATATTTAACATCAACGGCATGATTCACCTCATAGAATTCATCCAAAACA 534
                       * * * *****  *    *  *    *** *     **    *  * * *  *** ** 

consensus_6957#1      CAATGTGCTGCGTATCCGG---------CAACAGCAACCTGATTGCTA----ACCTGACG 352
consensus_6957#2      CAATGTGCTGCGTATCCGG---------CAACAGCAACCTGATTGCTA----ACCTGACG 430
consensus_6957#0      CAGCAGTTTGGGTACACGAATCTGTTACCAACAGTAAACTCCTCACAGCACCACACGAGA 594
                      **      ** ***  **          ****** ** **  *  *      **  **  

consensus_6957#1      CATAATCGAT------CGAACCAGCC-AACAAGCCAGCCAACCAGCCAGCCAACCAGCCA 405
consensus_6957#2      CATAATCGAT------CGAACCAGCC-AACAAGCCAGCCAACCAGCCAGCCAACCAGCCA 483
consensus_6957#0      TGAGTTTGATACGTTCCACACTAGCAGAACAAGGCGCCGTGATAGACATTCCCAGTACAT 654
                           * ***      *  ** ***  ****** *  *     ** **  *      *  

consensus_6957#1      GCCAACCAGCCATCCAACCAGCCATCCAACCAGCCAGCCAACCAGCCAGCCAACCAGCCA 465
consensus_6957#2      ------------------------------------------------------------
consensus_6957#0      CCCAGTTAGAAACAGAACAAGCTTCAGAGCTA--TAGCTGAACATCTAATATTACTGAAT 712
                                                                                  

consensus_6957#1      GCCAACCAGCCAGCCATCCAGCTAGTCAACCGACCCGTCAGCGAGCCAACAGTTCGTGAA 525
consensus_6957#2      ------------------------------------------------------------
consensus_6957#0      AATGGTAACAGCATCAGCTAACGGAGCAAATGCGTTCCTAACAATAGAACAATCCATGGG 772
                                                                                  

consensus_6957#1      ACACTCCATGAGTAAAGAATAAAGTTTTGTTT---------------------------- 557
consensus_6957#2      ------------------------------------------------------------
consensus_6957#0      AT-CTATTTGATCCATGGGAGTTCTCCAACTGCACAGTTATAATTGGGAAAGATACACCT 831
                                                                                  

consensus_6957#1      ------------------------------------------------------------
consensus_6957#2      ------------------------------------------------------------
consensus_6957#0      TCTCATCAAAAACGCCTTCGATTACATCGGAACCATATTGAGTGCCCAAGCAGCAATACC 891
                                                                                  

consensus_6957#1      ------------------------------------------------------------
consensus_6957#2      ------------------------------------------------------------
consensus_6957#0      GCCAAATACCAATAACCTTTGGCAACAATGTCATTAATAGGATACGTTAAGCTTCTGCAA 951
                                                                                  

consensus_6957#1      ----------------------------------
consensus_6957#2      ----------------------------------
consensus_6957#0      TTCAGCAACATCGATTACTGGAAGTGGAGTATAC 985