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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6965#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1096 fasta sequence
[CCGCGGACGCGTGGGCGGACGCGTGGGTGGGTGTGAAGTTCTCCAAGGAGATGGTGCTGACCAAGGAACAGATCTACCCGATGGAGAACGCCAACATGGAGATGACGCCGATGCAGGAGCGGCTGGTGAAGAAGCTGGGCGCGAACGCGTTCCCGTTCACCTTCCACTTCCCGAGCATGGCGCCGAGCTCGGTGACGCTGCAGGCCGGTGAGGACGACACGGGCAAACCGCTCGGCGTCGAGTACGCGATCAAGGCGCACGTCGGCGAGGACGAGAGCGACAAGGGCCACAAGCGCAGCGCCGTCACGCTGACGATCAAGAAGCTCCAGTACGCGCCGGTGTCCCGCGGTCGTCGTCTTCCTTCGTCGCTCGTCAGCAAGGGCTTCACCTTCTCGCAGGGCAAGATCAACCTGGAGGTAACGCTCGATCGGGAGATCTACTACCACGGCGAGAAGATTGCGACCAACATCGTCGTGACGAACAACTCGCGCAAGACTGTCAAGAGCATCAAGTGGCTTCGTGGTGCAGCACTGTGAGGTCACGATGGTGAATGCACAGTTCAGCAAGCACATCGCCTCGCTGGAGACGCGCGAGGGTTGCCCGATCACGCCCGGGGCGAGCTTCACGAAATCGTTCTTCCTGGTCCCGCTCGCCTCCAGCAACAAGGACCGCCGGGGCATTGCGCTCGACGGCCACCTGAAGGAGGATGACGTCAACCTGGCCTCGTCCACGCTGATCAGCGAGGGCAAGTGTCCGTCGGATGCGATGGGTATTGTCATCTCGTACTCGCTGCGCGTCAAGCTCAATTGTGGCACGCTCGGTGGCGAACTCCAGACGGACGTACCGTTCAAGCTGATGAACCCAGCACCTGGATCTGTCGAGCGAGAGCGCGTGAACGCCCTGAAGAAGATGAAGTCGATAGAGCGTCACCGTTACGAGAACTCGCACTACGCCGACGATGACGACAACATCGTGTTCGAAGAAACCGAGCGCGGATGGTGAGGAGAACAACGAGCCGGATTCGATGTGGAGATGACGCTGGAAGACTTCCAACCGGACGACGACGATAACTGGGTGCCGTACGATGATGAGCCAC]
[+] EMBL BM623427 [CCGCGGACGCGTGGGCGGACGCGTGGGTGGGTGTGAAGTTCTCCAAGGAGATGGTGCTGACCAAGGAACAGATCTACCCGATGGAGAACGCCAACATGGAGATGACGCCGATGCAGGAGCGGCTGGTGAAGAAGCTGGGCGCGAACGCGTTCCCGTTCACCTTCCACTTCCCGAGCATGGCGCCGAGCTCGGTGACGCTGCAGGCCGGTGAGGACGACACGGGCAAACCGCTCGGCGTCGAGTACGCGATCAAGGCGCACGTCGGCGAGGACGAGAGCGACAAGGGCCACAAGCGCAGCGCCGTCACGCTGACGATCAAGAAGCTCCAGTACGCGCCGGTGTCCCGCGGTCGTCGTCTTCCTTCGTCGCTCGTCAGCAAGGGCTTCACCTTCTCGCAGGGCAAGATCAACCTGGAGGTAACGCTCGATCGGGAGATCTACTACCACGGCGAGAAGATTGCGACCAACATCGTCGTGACGAACAACTCGCGCAAGACTGTCAAGAGCATCAAGTGGCTTCGTGGTGCAGCACTGTGAGGTCACGATGGTGAATGCACAGTTCAGCAAGCACATCGCCTCGCTGGAGACGCGCGAGGGTTGCCCGATCACGCCCGGGGCGAGCTTCACGAAATCGTTCTTCCTGGTCCCGCTCGCCTCCAGCAACAAGGACCGCCGGGGCATTGCGCTCG ]
[+] EMBL BX617917 [ CCCGATCAC CCCGGGGCGAGCTTCACGAAATCGTTCTTCCTGGTCCCGCTCGCCTCCAGCAACAAGGACCGCCGGGGCATTGCGCTCGACGGCCACCTGAAGGAGGATGACGTCAACCTGGCCTCGTCCACGCTGATCAGCGAGGGCAAGTGTCCGTCGGATGCGATGGGTATTGTCATCTCGTACTCGCTGCGCGTCAAGCTCAATTGTGGCACGCTCGGTGGCGAACTCCAGACGGACGTACCGTTCAAGCTGATGAACCCAGCACCTGGATCTGTCGAGCGAGAGCGCGTGAACGCCCTGAAGAAGATGAAGTCGATAGAGCGTCACCGTTACGAGAACTCGCACTACGCCGACGATGACGACAACATCGTGTTCGAAGAAACCGAGCGCGGATGGTGAGGAGAACAACGAGCCGGATTCGATGTGGAGATGACGCTGGAAGACTTCCAACCGGACGACGACGATAACTGGGTGCCGTACGATGATGAGCCAC]
consensusID : consensus_6965#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 731 fasta sequence
[CCGCGGACGCGTGGCCGCGCACTTGTTCAATTTCGTTTGAAATCTCGTTCAGTTCAGCGGTTGGAAAAAGAAACAAATCAGACACCATGGTTGACGCAGCTGTTATGGAAAAGATGGAGGCTGGCTTCGCCAAGCTGGCTGCCTCGGACTCCAAGTCCCTGCTGAAGAAGTACTTGACCAAGGAAGTCTTCGACGCTCTGAAGAACAAGAAGACCTCCTTTGGCTCGACTCTGCTGGACTGCGTCCAGTCTGGTTTCGAGAACCCAGACTCCGGCGTCGGCATCTACGCCCCGGACGCTGAGGCGTACTCCCTGTTCGCTGATTTGTTCGACCCGATCATCGAGGACTACCACAAGGGCTTCAAGAAGACCGACAAGCACCCGGCCAGTGACTTCGGTGATGTGAACGCCTTCGGCAACGTCGACCCGACCGGCGAGTTCGTCGTGTCGACCCGCGTCCGTTGCGGTCGCTCGATGGAGGGCTACCCGTTCAACCCCTGCCTGACCGAGGCCCAGTACAAGGAGATGGAGGGCAAGGTGTCGACCACGCTGTCCGGGCTGGAGGGTGAGCTGAAGGGCAAGTTCTACCCGCTGACCGGCATGGACAAGGCCGTCCAGCAGCAGCTGATCGACGATCACTTCCT-GTTCAAGGAGGGCGACCGTTTCCTGCAGGCCGCGAACGCGTGCCGCTACTGGCCGTCCGGTCGCGGTATCTACCACAACGACAACAAG]
[+] EMBL BM630606 [CCGCGGACGCGTGGGCACGCACTTGTTCAATTTCGTTTGAAATCTCGTTCAGTTCAGCGGTTGGAAAAAGAAACAAATCAGACACCATGGTTGACGCAGCTGTTATGGAAAAGATGGAGGCTGGCTTCGCCAAGCTGGCTGCCTCGGACTCCAAGTCCCTGCTGAAGAAGTACTTGACCAAGGAAGTCTTCGACGCTCTGAAGAACAAGAAGACCTCCTTCGGCTCGACTCTGCTGGACTGCGTCCAGTCTGGTTTCGAGAACCCAGACTCCGGCGTCGGCATCTACGCCCCGGACGCTGAGGCGTACTCCCTGTTCGCTGATTTGTTCGACCCGATCATCGAGGACTACCACAAGGGCTTCAAGAAGACCGACAAGCACCCGGCCAGTGACTTCGGTGATGTGAACGCCTTCGGCAACGTCGACCCGACCGGCGAGTTCGTCGTGTCGACCCGCGTCCGTTGCGGTCGCTCGATGGAGGGCTACCCGTTCAACCCCTGCCTGACCGAGGCCCAGTACAAGGAGATGGAGGGCAAGGTGTCGACCACGCTGTCCGGGCTGGAGGGTGAGCTGAAGGGCAAGTTCTACCCGCTGACCGGCATGG ]
[+] EMBL BM631803 [ CCGCGCACTTGTTCAATTTCGTTTGAAATCTCGTTCAGTTCAGCGGTTGGAAAAAGAAACAAATCAGACACCATGGTTGACGCAGCTGTTATGGAAAAGATGGAGGCTGGCTTCGCCAAGCTGGCTGCCTCGGACTCCAAGTCCCTGCTGAAGAAGTACTTGACCAAGGAAGTCTTCGACGCTCTGAAGAACAAGAAGACCTCCTTTGGCTCGACTCTGCTGGACTGCGTCCAGTCTGGTTTCGAGAACCCAGACTCCGGCGTCGGCATCTACGCCCCGGACGCTGAGGCGTACTCCCTGTTCGCTGATTTGTTCGACCCGATCATCGAGGACTACCACAAGGGCTTCAAGAAGACCGACAAGCACCCGGCCAGTGACTTCGGTGATGTGAACGCCTTCGGCAACGTCGACCCGACCGGCGAGTTCGTCGTGTCGACCCGCGTCCGTTGCGGTCGCTCGATGGAGGGCTACCCGTTCAACCCCTGCCTGACCGAGGCCCAGTACAAGGAGATGGAGGGCAAGGTGTCGACCACGCTGTCCGGGCTGGAGGGTGAGCTGAAGGGCAAGTTCTACCCGCTGACCGGCATGGACAAGGCCGTCCAGCAGCAGCTGATCGACGATCACTTCCT GTTCAAGGAGGGCGACCGTTTCCTGCAGGCCGCGAACGCGTGCCGCTACTGGCCGTCCGGTCGCGGTATCTACCACAACGACAACAAG]
[+] EMBL BM632596 [ CCGCGCACTTGTTCAATTTCGTTTGAAATCTCGTTCAGTTCAGCGGTTGGAAAAAGAAACAAATCAGACACCATGGTTGACGCAGCTGTTATGGAAAAGATGGAGGCTGGCTTCGCCAAGCTGGCTGCCTCGGACTCCAAGTCCCTGCTGAAGAAGTACTTGACCAAGGAAGTCTTCGACGCTCTGAAGAACAAGAAGACCTCCTTTGGCTCGACTCTGCTGGACTGCGTCCAGTCTGGTTTCGAGAACCCAGACTCCGGCGTCGGCATCTACGCCCCGGACGCTGAGGCGTACTCCCTGTTCGCTGATTTGTTCGACCCGATCATCGAGGACTACCACAAGGGCTTCAAGAAGACCGACAAGCACCCGGCCAGTGACTTCGGTGATGTGAACGCCTTCGGCAACGTCGACCCGACCGGCGAGTTCGTCGTGTCGACCCGCGTCCGTTGCGGTCGCTCGATGGAGGGCTACCCGTTCAACCCCTGCCTGACCGAGGCCCAGTACAAGGAGATGGAGGGCAAGGTGTCGACCACGCTGTCCGGGCTGGAGGGTGAGCTGAAGGGCAAGTTCTACCCGCTGACCGGCATGGACAAGGCCGTCCAGCAGCAGCTGATCGACGATCACTTCCTGGTTCAAGGAGGGCGACCGTTTCCTGCAGGCCGCGAACGCGTG ]
consensusID : consensus_6965#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence
[CCGCCCACGCGTCCGGGCAATTTTGTACGACCAATCTCGAAGCGAGTGAATTGAGGGAGTGAGCTACCGTGTGTGAGAATACTCGTGATACATTTCGAAAGTTCTATCTGATTGTTTGCTCTGTGTTTGCGAAGACACAAACTAACGCGCAGTGATGGTTGTCGCAGTGAAAGTGTTCAAAAAATCCGCCCCGAATGGCAAACTGACCGTCTATCTCGGCAAGCGTGACTGTTTCATCGACCACACCGACTACTGTGACCCGATCGATGGCGTTATCGTGCTGGACGAGGAGTACCTGCGAGGCCGCAAGGTCTTCGGCCAGCTCATCACCACCTACCGCTATGGCCGGGAAGACGATGAGGTGATGGGTGTGAAGTTCTCCAAGGAGATGGTGCTGACCAAGGAACAGATCTACCCGATGGAGAACGCCAACATGGAGATGACGCCGATGCAGGAGCGGCTGGTGAAGAAGCTGGGCGCGAACGCGTTCCCGTTCACCTTCCACTTCCCGAGCATGGCGCCGAGCTCGGTGACGCTGCAGGCCGGTGAGGACGACACGGGCAAACCGCTCGGCGTCGAGTACGCGATCAAGGCGCACGTCGGCGAGGACGAGAGCGACAAGGGC]
[+] EMBL BM590308 [CCGCCCACGCGTCCGGGCAATTTTGTACGACCAATCTCGAAGCGAGTGAATTGAGGGAGTGAGCTACCGTGTGTGAGAATACTCGTGATACATTTCGAAAGTTCTATCTGATTGTTTGCTCTGTGTTTGCGAAGACACAAACTAACGCGCAGTGATGGTTGTCGCAGTGAAAGTGTTCAAAAAATCCGCCCCGAATGGCAAACTGACCGTCTATCTCGGCAAGCGTGACTGTTTCATCGACCACACCGACTACTGTGACCCGATCGATGGCGTTATCGTGCTGGACGAGGAGTACCTGCGAGGCCGCAAGGTCTTCGGCCAGCTCATCACCACCTACCGCTATGGCCGGGAAGACGATGAGGTGATGGGTGTGAAGTTCTCCAAGGAGATGGTGCTGACCAAGGAACAGATCTACCCGATGGAGAACGCCAACATGGAGATGACGCCGATGCAGGAGCGGCTGGTGAAGAAGCTGGGCGCGAACGCGTTCCCGTTCACCTTCCACTTCCCGAGCATGGCGCCGAGCTCGGTGACGCTGCAGGCCGGTGAGGACGACACGGGCAAACCGCTCGGCGTCGAGTACGCGATCAAGGCGCACGTCGGCGAGGACGAGAGCGACAAGGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6965#0 CCGCGGACGCGTGGGCGGACGCGTGGGTGGGTGTGAAGTTCTCCAAGGAGATGGTGCTGA 60
consensus_6965#2 ------------------------------------------------------------
consensus_6965#1 ------------------------------------------------------------
consensus_6965#0 CCAAGGAACAGATCTACCCGATGGAGAACGCCAACATGGAGATGACGCCGATGCAGGAGC 120
consensus_6965#2 ------------------------------------------------------------
consensus_6965#1 ------------------------------------------------------------
consensus_6965#0 GGCTGGTGAAGAAGCTGGGCGCGAACGCGTTCCCGTTCACCTTCCACTTCCCGAGCATGG 180
consensus_6965#2 ------------------------------------------------------------
consensus_6965#1 ------------------------------------------------------------
consensus_6965#0 CGCCGAGCTCGGTGACGCTGCAGGCCGGTGAGGACGACACGGGCAAACCGCTCGGCGTCG 240
consensus_6965#2 ------------------------------------------------------------
consensus_6965#1 ------------------------------------------------------------
consensus_6965#0 AGTACGCGATCAAGGCGCACGTCGGCGAGGACGAGAGCGACAAGGGCCACAAGCGCAGCG 300
consensus_6965#2 ------------------------------------------------------------
consensus_6965#1 ------------------------------------------------------------
consensus_6965#0 CCGTCACGCTGACGATCAAGAAGCTCCAGTACGCGCCGGTGTCCCGCGGTCGTCGTCTTC 360
consensus_6965#2 ------------------------------------------------------------
consensus_6965#1 ------------------------------------------------------------
consensus_6965#0 CTTCGTCGCTCGTCAGCAAGGGCTTCACCTTCTCGCAGGGCAAGATCAACCTGGAGGTAA 420
consensus_6965#2 ----------------------------------------------CCGCCCACGCGTCC 14
consensus_6965#1 --------------------------------CCGCGGACGCGTGGCCGCGCACTTGTTC 28
* * **
consensus_6965#0 CGCTCGATCGGGA----GATCTACTACCACGGCGAGAAGATTGCGACCAACATC-GTCGT 475
consensus_6965#2 GGGCAATTTTGTA----CGACCAATCTCGAAGCGAGTGAATTGAGGGAGTGAGCTACCGT 70
consensus_6965#1 AATTTCGTTTGAAATCTCGTTCAGTTCAGCGGTTGGAAAAAGAAACAAATCAGACACCAT 88
* * * * * * * * * * *
consensus_6965#0 GACGAAC--AACTCGCGCAAGAC-TGTCAAGA---GCATCAAGTGGCTTCGTGGTGCAGC 529
consensus_6965#2 GTGTGAG--AATACTCGTGATACATTTCGAAA---GTTCTATCTGATTGTTTGCTCTGTG 125
consensus_6965#1 GGTTGACGCAGCTGTTATGGAAAAGATGGAGGCTGGCTTCGCCAAGCTGGCTGCCTCG-G 147
* * * * * * * * **
consensus_6965#0 ACTGTGAGGTCACGATGGTGAA-TGCACAGTTCAGCAAGCACATCGCCTCGCTGGAGACG 588
consensus_6965#2 TTTGCGAAGACACAA--ACTAA-CGCGCAGTGATG-------GTTGTCGCAGTGAAAGTG 175
consensus_6965#1 ACTCCAAGTCCCTGCTGAAGAAGTACTTGACCAAGGAAGT-CTTCGACGCTCTGAAGAAC 206
* * * ** * * * * * * ** *
consensus_6965#0 CGCGAGGGTTGCCCGATCACGCCCGGGGCGAGCTTCACGAAATCGTTCTTCCTGGTCCCG 648
consensus_6965#2 TTCAAAAAATCCGC-----CCCGAATGGCAAACTGACCG---TCTATCTCGGCAAGCGTG 227
consensus_6965#1 AAGAAGACCTCCTTTGGCTCGACTCTGCTGGACTGCGTCCAGTCTGGTTTCGAGAACCCA 266
* * * * * ** ** * *
consensus_6965#0 ----CTCGCCTC--CAGCAACAAG--GACCGCCGGGGCAT----TGCGCTCGACGGCCAC 696
consensus_6965#2 ----ACTGTTTCATCGACCACACC--GACTACTGTGACC-------CGATCGATGGCGTT 274
consensus_6965#1 GACTCCGGCGTCGGCATCTACGCCCCGGACGCTGAGGCGTACTCCCTGTTCGCTGATTTG 326
* ** * * ** * * * * * * *** *
consensus_6965#0 CTGAAGGAGGAT---GACGTCAACCTGGCCTCGTCCACGCTGATCAGCGAGGGCAAG-TG 752
consensus_6965#2 ATCGTGCTGGAC---GAGGAGTACCTGCGAGGCCGCAAGGTCTTCGGCCAGCTCA---TC 328
consensus_6965#1 TTCGACCCGATCATCGAGGACTACCACAAGGGCTTCAAGAAGACCGACAAGCACCCGGCC 386
* * ** * *** ** * * * ** *
consensus_6965#0 TCCGTCGGATGCGATGGGTATTGTCATCTCGTACTCGCTGCG--CGTCAAGCTCAATTGT 810
consensus_6965#2 ACCACCTACCGCTATGGCCGGGAAGACGATGAGGT-GATGGG--TGTGAAGTTCTCCAAG 385
consensus_6965#1 AGTGACTTCGGTGATGTGAACGCCTTCGGCAACGTCGACCCGACCGGCGAGTTCGTCGTG 446
* * *** * * * * ** **
consensus_6965#0 --GGCACGC-TCGGTGGCGAACTCCAGACGGAC--GTACCGTTCAAGCTGATGAAC-CCA 864
consensus_6965#2 --GAGATG-----GTGCTGACCAAGGAACAGAT--CTACCC-----GATGGAGAACGCCA 431
consensus_6965#1 TCGACCCGCGTCCGTTGCGGTCGCTCGATGGAGGGCTACCC-----GTTCAACCCCTGCC 501
* * ** * * * ** **** * * * *
consensus_6965#0 GCACCTGGATC-TGTCGA-GCGAGAGCGCGTGAACGCCCTGAAGAAGATGAAGTCGATAG 922
consensus_6965#2 ACATGGAGATGACGCCGATGCAGGAGCGGCTGG------TGAAGAAGCTG--GGCGCGAA 483
consensus_6965#1 TGACCGAGGCCCAGTACAAGGAGATGGAGGGCAAGGTGTCGACCACGCTGTCCGGGCTGG 561
* * * * * * ** * * ** *
consensus_6965#0 AGCGTCACCGTTACGAGAACTCGCACTACGCCGACGATGACGACAACATCGTGTTCGAAG 982
consensus_6965#2 CGCGTTCCCGTTC----ACCTTCCACTTC-CCGAGCATGGCGCCGA------GCTCGGTG 532
consensus_6965#1 AGGGTGAGCTGAAGGGCAAGTTCTACC-CGCTGACCGGCATGGACAAGGCCGTCCAGCAG 620
* ** * * * ** * * ** * * * *
consensus_6965#0 AAACCGAGCGCGGATGG-TGAGGAGAACAACGAGCCGGATTCGATGTGGAGATGACGCTG 1041
consensus_6965#2 ACGCTGCAGGCCGGTGA-GGACGACACGGGCAAACCG--CTCGGCGTCGAGTACGCGATC 589
consensus_6965#1 CAGCTGATCGACGATCACTTCCTGTTCAAGGAGGGCGACCGTTTCCTGCAGGCCGCGAAC 680
* * * * * ** * ** **
consensus_6965#0 GAAG---ACTTCCAACCGGACGACGACGATAACTGGGTGCCGTACGATGATGAGCCAC 1096
consensus_6965#2 AAGGCGCACGTCGGCGAGGACGAGAGCGACAA--GGGC-------------------- 625
consensus_6965#1 GCGTGCCGCTACTGGCCGTCCGGTCGCGGTATCTACCACAACGACAACAAG------- 731
* * * ** ** *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||