cluster # 6974

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Anopheles gambiae
cluster # 6974 cluster # 6974 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6974#0 length = 712 sequences # 1

consensus_6974#1 length = 639 sequences # 4
consensus_6974#2 length = 621 sequences # 1

consensusID : consensus_6974#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 712
fasta sequence

                              [AATGCGATTGAAATTAATGTATTAACACATGTCTCACTTACGAAAATTAAAGAATATTTGCTAAAGGTTCTTCAAATGTTCAACATTGCCTATTTTGTGACGCATCCTGCCCACCAGTTCTGCCGCGGGGTCAACATAAATCAGCATTATCAGAACAACATTAGGCACTCGCGGGAACATCGCTGGTTCCGACCAGTTCGGCACAAATGTCACACCAGATTACGTCGCTAAAGATGCGAACTAATGTCCAGCCATGCTATGCCCACGCAAAGGCGTAAATCCCCAACTTCAAAATGTTCTAGAAATATGAACTGCTCATCGACACTATCTTCATTTCATTCTTGTTCATTCATTCCCTCCCTTTAGATTGTTCTTTTCGCTGCCCTGGCCGTGTTCTGTGCCGTTAAGGCGCAGGATGAGGTGCAAGTCATAAGCTTTAACAACGACAACAACGTCGATGGAAGCTACCAATTTGCCTACGAACAGAGCGATGGCCAAAAGCGGGAGGAAAAGGGTGAGCTGAAGCCGGTGGAAGGATCCGACGAGCCAGCCCTGTCCGTGAAAGGTTCGTACGAGTATACCGACTCGAATGGACAGCGATACCGGGTGGACTATGTTGCTGACGAGCGANGATACCGCCCGACGGTGACCAAGCTGTAAGATGCGGAGACGGTACAGCCTCGCCATCACAAGCACAAACACTCAGTGAGAT]

[+] EMBL BX624465             [AATGCGATTGAAATTAATGTATTAACACATGTCTCACTTACGAAAATTAAAGAATATTTGCTAAAGGTTCTTCAAATGTTCAACATTGCCTATTTTGTGACGCATCCTGCCCACCAGTTCTGCCGCGGGGTCAACATAAATCAGCATTATCAGAACAACATTAGGCACTCGCGGGAACATCGCTGGTTCCGACCAGTTCGGCACAAATGTCACACCAGATTACGTCGCTAAAGATGCGAACTAATGTCCAGCCATGCTATGCCCACGCAAAGGCGTAAATCCCCAACTTCAAAATGTTCTAGAAATATGAACTGCTCATCGACACTATCTTCATTTCATTCTTGTTCATTCATTCCCTCCCTTTAGATTGTTCTTTTCGCTGCCCTGGCCGTGTTCTGTGCCGTTAAGGCGCAGGATGAGGTGCAAGTCATAAGCTTTAACAACGACAACAACGTCGATGGAAGCTACCAATTTGCCTACGAACAGAGCGATGGCCAAAAGCGGGAGGAAAAGGGTGAGCTGAAGCCGGTGGAAGGATCCGACGAGCCAGCCCTGTCCGTGAAAGGTTCGTACGAGTATACCGACTCGAATGGACAGCGATACCGGGTGGACTATGTTGCTGACGAGCGANGATACCGCCCGACGGTGACCAAGCTGTAAGATGCGGAGACGGTACAGCCTCGCCATCACAAGCACAAACACTCAGTGAGAT]




>consensus_6974#0
AATGCGATTGAAATTAATGTATTAACACATGTCTCACTTACGAAAATTAAAGAATATTTG
CTAAAGGTTCTTCAAATGTTCAACATTGCCTATTTTGTGACGCATCCTGCCCACCAGTTC
TGCCGCGGGGTCAACATAAATCAGCATTATCAGAACAACATTAGGCACTCGCGGGAACAT
CGCTGGTTCCGACCAGTTCGGCACAAATGTCACACCAGATTACGTCGCTAAAGATGCGAA
CTAATGTCCAGCCATGCTATGCCCACGCAAAGGCGTAAATCCCCAACTTCAAAATGTTCT
AGAAATATGAACTGCTCATCGACACTATCTTCATTTCATTCTTGTTCATTCATTCCCTCC
CTTTAGATTGTTCTTTTCGCTGCCCTGGCCGTGTTCTGTGCCGTTAAGGCGCAGGATGAG
GTGCAAGTCATAAGCTTTAACAACGACAACAACGTCGATGGAAGCTACCAATTTGCCTAC
GAACAGAGCGATGGCCAAAAGCGGGAGGAAAAGGGTGAGCTGAAGCCGGTGGAAGGATCC
GACGAGCCAGCCCTGTCCGTGAAAGGTTCGTACGAGTATACCGACTCGAATGGACAGCGA
TACCGGGTGGACTATGTTGCTGACGAGCGANGATACCGCCCGACGGTGACCAAGCTGTAA
GATGCGGAGACGGTACAGCCTCGCCATCACAAGCACAAACACTCAGTGAGAT

consensusID : consensus_6974#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 639
fasta sequence

                              [AATCGCCCGAGGGTCNCGGTACGGC-ATCGAGT-CAGTACACACCCTGTGGTCGTCCTGTGATTAGCGAGTGAGATTTTGCGCCCAACATTGCTCCCGTGCTCCCGGTACTCCAGGAAACGTTTTATTACAGCCGTTGGATTATT-CCCCGTGTGGTGTGTCCGTGTGTACCGTCTAACCGTCAGCATGAAGCACGTGATTGTTCTTTTCGCTG-CCCTGGCCGTGTTCTGTGCCGTTAAGGCGCAGGATGAGGTGCAAGTCATAAGCTTTAACAACGACAACAACGTCGATGGAAGCTACCAATTTGCCTACGAACAGAGCGATGGCCAAAAGCGGGAGGAAAAGGGTGAGCTGAAGCCGGTGGAAGGATCCGACGAGCCAGCCCTGTCCGTGAAAGGTTCGTACGAGTATACCGACTCGAATGGACAGCGATACCGGGTGGACTATGTTGCTGACGAGCGAGGATACCGCCCGACGGTGACCAAGCTGTAAGATGCGGAGACGGTACAGCCTCGCCATCACAAGCACAAACACTCAGTGAGATTCAAATGCCACAAACAGTATGTAAAAAAAAGTGAATAAAGTTGTGAACAATGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGG]

[+] EMBL AL933767             [AATCGCCCGAGGGTCNCGGTACGGC ATCGAGT CAGTACACACCCTGTGGTCGTCCTGTGATTAGCGAGTGAGATTTTGCGCCCAACATTGCTCCCGTGCTCCCGGTACTCCAGGAAACGTTTTATTACAGCCGTTGGATTATT CCCCGTGTGGTGTGTCCGTGTGTACCGTCTAACCGTCAGCATGAAGCACGTGATTGTTCTTTTCGCTGCCCCTGGCCGTGTTCTGTGCCGTTAAGGCGCAGGATGAGGTGCAAGTCATAAGCTTTAACAACGACAACAACGTCGATGGAAGCTACCAATTTGCCTACGAACAGAGCGATGGCCAAAAGCGGGAGGAAAAGGGTGAGCTGAAGCCGGTGGAAGGATCCGACGAGCCAGCCCTGTCCGTGAAAGGTTCGTACGAGTATACCGACTCGAATGGACAGCGATACCGGGTG                                                                                                                                                                                                         ]
[+] EMBL CNS08W8Q             [                  GTACGGCGATCGTGTCCAGTACACACCCTGTGGTCGTCCTGTGATTAGCGAGTGAGATTTTGCGCCCAACATTGCTCCCGTGCTCCCGGTACTCCAGGAAACGTTTTATTGCAGCCGTTGGATTATTCCCCCGTGCGGTGTGTCCGTGTGTATCGTCAAACCGTCAGCATGAAGCACGTGATTGTTATTTTCGCTG CCCTGGCCGTGTTCTGTGCCGTTAAGGCGCAGGATGAGGTGCAAGTCATAAGCTTCAACAACGACAACAACGTCGATGGAAGCTACCAATTTGCCTACGAACAGAGCGATGGCCAAAAGCGGGAGGAAAAGGGTGAGCTGAAGCCGGTGGAAGGATCCGACGAGCCAGCCCTGTCCGTGAAAGGTTCGTACGAGTATACCGACTCCAATGGACAGCGATACCGGGTGGACTATGTTGCTGACGAGCGAGGATACCGCCCGACGGTGACCAAGCTGTAAGATGCGGAGACGGTACAACCTCGCCATCACAAGCACAAACACTCAGTGAGATTCAAATGCCACAAACAGTATGTAAAAAAAAGTGAATAAAGTTGTGAACAATGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGG]
[+] EMBL BX614802             [                                                        CTGTGATTAGCGAGTGAGATTTTGCGCCCAACATTGCTCCCGTGCTCCCGGTACTCCAGGAAACGTTTTATTACAGCCGTTGGATTATT CCCCGTGTGGTGTGTCCGTGTGTACCGTCTAACCGTCAGCATGAAGCACGTGATTGTTCTTTTCGCTG CCCTGGCCGTGTTCTGTGCCGTTAAGGCGCAGGATGAGGTGCAAGTCATAAGCTTTAACAACGACAACAACGTCGATGGAAGCTACCAATTTGCCTACGAACAGAGCGATGGCCAAAAGCGGGAGGAAAAGGGTGAGCTGAAGCCGGTGGAAGGATCCGACGAGCCAGCCCTGTCCGTGAAAGGTTCGTACGAGTATACCGACTCGAATGGACAGCGATACCGGGTGGACTATGTTGCTGACGAGCGAGGATACCGCCCGACGGTGACCAAGCTGTAAGATGCGGAGACGGTACAGCCTCGCCATCACAAGCACAAACACTCAGTGAGATTCAAATGCCACAAACAGTATGTAAAAAAAAGTGAATAAAGT                                                         ]
[+] EMBL BX624524             [                                                            GATTAGCGAGTGAGATTTTGCGCCCAACATTGCTCCCGTGCTCCCGGTACTCCAGGAAACGTTTTATTACAGCCGTTGGATTATT CCCCGTGTGGTGTGTCCGTGTGTACCGTCTAACCGTCAGCATGAAGCACGTGATTGTTCTTTTCGCTG CCCTGGCCGTGTTCTGTGCCGTTAAGGCGCAGGATGAGGTGCAAGTCATAAGCTTTAACAACGACAACAACGTCGATGGAAGCTACCAATTTGCCTACGAACAGAGCGATGGCCAAAAGCGGGAGGAAAAGGGTGAGCTGAAGCCGGTGGAAGGATCCGACGAGCCAGCCCTGTCCGTGAAAGGTTCGTACGAGTATACCGACTCGAATGGACAGCGATACCGGGTGGACTATGTTGCTGACGAGCGAGGATACCGCCCGACGGTGACCAAGCTGTAAGATGCGGAGACGGTACAGCCTCGCCATCACAAGCACAAACACTCAGTGAGATTCAAATGCCACAAACAGTATGTAAAAAAAAGTGAATAAAGTTGTGAACAA                                                ]




>consensus_6974#1
AATCGCCCGAGGGTCNCGGTACGGCATCGAGTCAGTACACACCCTGTGGTCGTCCTGTGA
TTAGCGAGTGAGATTTTGCGCCCAACATTGCTCCCGTGCTCCCGGTACTCCAGGAAACGT
TTTATTACAGCCGTTGGATTATTCCCCGTGTGGTGTGTCCGTGTGTACCGTCTAACCGTC
AGCATGAAGCACGTGATTGTTCTTTTCGCTGCCCTGGCCGTGTTCTGTGCCGTTAAGGCG
CAGGATGAGGTGCAAGTCATAAGCTTTAACAACGACAACAACGTCGATGGAAGCTACCAA
TTTGCCTACGAACAGAGCGATGGCCAAAAGCGGGAGGAAAAGGGTGAGCTGAAGCCGGTG
GAAGGATCCGACGAGCCAGCCCTGTCCGTGAAAGGTTCGTACGAGTATACCGACTCGAAT
GGACAGCGATACCGGGTGGACTATGTTGCTGACGAGCGAGGATACCGCCCGACGGTGACC
AAGCTGTAAGATGCGGAGACGGTACAGCCTCGCCATCACAAGCACAAACACTCAGTGAGA
TTCAAATGCCACAAACAGTATGTAAAAAAAAGTGAATAAAGTTGTGAACAATGTAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGG

consensusID : consensus_6974#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 621
fasta sequence

                              [CCCGAGGTTTAACACATGTCTCACTTACGAACAATTAAAGAATATTTGCTAAAGGTTCTTCAAATGTTCAACATTGCCTATTTTGTGACGCATCCTGCCCACCAGTTCTGCCGCGGGGTCAACATAAATCAGCATTATCAGAACAACATTAGGCACTCGCGGGAACATCGCTGGTTCCGACCAGTTCGGACAAATGTCACACCAGATTACGTCGCTAAAGATGCGAACTAATGTCCAGCATGCTATGCCCACGCAAAGGCGTAAATCCCCAATTCAAAATGTCTAAAATATGAACTGCTCATCGACACTATCTTCATTTCATTCTTGTTCATTCATTCCCTCCCTTTAGATTGTTCTTTTTCGCTGCCCTGGCCGTGTTCTGTGCCGTTAAGGCGCAGGATGAGGTGCAAGTCATAAGCTTTAACAACGACAACAACGTCGATGGAAGCTACCAAATTTGCGTAAGTTTCAACCCATGCTTTCGCCATGAAATTTATCCCTTTTCGATTGTTTTTGGCACTATCGTGGTGGCATTTATGGGGGTTTNACTAATGTGAGTTTCGTTAATCTTTGAACTGCNACAGACTACGAACAGAGCGATGGCAAAAGCGGGAGGAAAAG]

[+] EMBL AL697439             [CCCGAGGTTTAACACATGTCTCACTTACGAACAATTAAAGAATATTTGCTAAAGGTTCTTCAAATGTTCAACATTGCCTATTTTGTGACGCATCCTGCCCACCAGTTCTGCCGCGGGGTCAACATAAATCAGCATTATCAGAACAACATTAGGCACTCGCGGGAACATCGCTGGTTCCGACCAGTTCGGACAAATGTCACACCAGATTACGTCGCTAAAGATGCGAACTAATGTCCAGCATGCTATGCCCACGCAAAGGCGTAAATCCCCAATTCAAAATGTCTAAAATATGAACTGCTCATCGACACTATCTTCATTTCATTCTTGTTCATTCATTCCCTCCCTTTAGATTGTTCTTTTTCGCTGCCCTGGCCGTGTTCTGTGCCGTTAAGGCGCAGGATGAGGTGCAAGTCATAAGCTTTAACAACGACAACAACGTCGATGGAAGCTACCAAATTTGCGTAAGTTTCAACCCATGCTTTCGCCATGAAATTTATCCCTTTTCGATTGTTTTTGGCACTATCGTGGTGGCATTTATGGGGGTTTNACTAATGTGAGTTTCGTTAATCTTTGAACTGCNACAGACTACGAACAGAGCGATGGCAAAAGCGGGAGGAAAAG]




>consensus_6974#2
CCCGAGGTTTAACACATGTCTCACTTACGAACAATTAAAGAATATTTGCTAAAGGTTCTT
CAAATGTTCAACATTGCCTATTTTGTGACGCATCCTGCCCACCAGTTCTGCCGCGGGGTC
AACATAAATCAGCATTATCAGAACAACATTAGGCACTCGCGGGAACATCGCTGGTTCCGA
CCAGTTCGGACAAATGTCACACCAGATTACGTCGCTAAAGATGCGAACTAATGTCCAGCA
TGCTATGCCCACGCAAAGGCGTAAATCCCCAATTCAAAATGTCTAAAATATGAACTGCTC
ATCGACACTATCTTCATTTCATTCTTGTTCATTCATTCCCTCCCTTTAGATTGTTCTTTT
TCGCTGCCCTGGCCGTGTTCTGTGCCGTTAAGGCGCAGGATGAGGTGCAAGTCATAAGCT
TTAACAACGACAACAACGTCGATGGAAGCTACCAAATTTGCGTAAGTTTCAACCCATGCT
TTCGCCATGAAATTTATCCCTTTTCGATTGTTTTTGGCACTATCGTGGTGGCATTTATGG
GGGTTTNACTAATGTGAGTTTCGTTAATCTTTGAACTGCNACAGACTACGAACAGAGCGA
TGGCAAAAGCGGGAGGAAAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6974#0      AATGCGATTGAAATTAATGTATTAACACATGTCTCACTTACGAA-AATTAAAGAATATTT 59
consensus_6974#2      ------------CCCGAGGT-TTAACACATGTCTCACTTACGAACAATTAAAGAATATTT 47
consensus_6974#1      ------------------------------------------------------------
                                                                                  

consensus_6974#0      GCTAAAGGTTCTTCAAATGTTCAACATTGCCTATTTTGTGACGCATCCTGCCCACCAGTT 119
consensus_6974#2      GCTAAAGGTTCTTCAAATGTTCAACATTGCCTATTTTGTGACGCATCCTGCCCACCAGTT 107
consensus_6974#1      ------------------------------------------------------------
                                                                                  

consensus_6974#0      CTGCCGCGGGGTCAACATAAATCAGCATTATCAGAACAACATTAGGCACTCGCGGGAACA 179
consensus_6974#2      CTGCCGCGGGGTCAACATAAATCAGCATTATCAGAACAACATTAGGCACTCGCGGGAACA 167
consensus_6974#1      -----------------------------------------------AATCGCCCGAGGG 13
                                                                     * ****  **   

consensus_6974#0      TCGCTGGTTCCGACCAGTTCGGCACAAATGTCACACCAGATTACGTCGCTAAAGA-TGCG 238
consensus_6974#2      TCGCTGGTTCCGACCAGTTCGG-ACAAATGTCACACCAGATTACGTCGCTAAAGA-TGCG 225
consensus_6974#1      TCNCGGTACGGCATCGAGTCAGTACACACCCTGTGGTCG-TCCTGTGATTAGCGAGTGAG 72
                      ** * *      * *   ** * *** *          * *   **   **  ** ** *

consensus_6974#0      AACTAATGTCCAGCCATGCT---ATGCCCACGCAAAGGCGTAAATCCCCAACTTCAAAAT 295
consensus_6974#2      AACTAATGTCCAGC-ATGCT---ATGCCCACGCAAAGGCGTAAATCCCCAA-TTCAAAAT 280
consensus_6974#1      ATTTTGCGCCCAACATTGCTCCCGTGCTCCCGGTACTCCAGGAAACGTTTTATTACAGCC 132
                      *  *   * *** *  ****    *** * **  *   *   ** *      **  *   

consensus_6974#0      GTTCTAGAAATATGAACTGCTCATCG-ACACTATCTTCATTT-CATTCTTGTTCATTCAT 353
consensus_6974#2      GTCT--AAAATATGAACTGCTCATCG-ACACTATCTTCATTT-CATTCTTGTTCATTCAT 336
consensus_6974#1      GT----------TGGATTATTCCCCGTGTGGTGTGTCCGTGTGTACCGTCTAACCGTCAG 182
                      **          ** * *  **  **     * * * * * *  *   *    *  *** 

consensus_6974#0      TCCCTCCCTTTAGATTGTTCTTTT-CGCTGCCCTGGCCGTGTTCTGTGCCGTTAAGGCGC 412
consensus_6974#2      TCCCTCCCTTTAGATTGTTCTTTTTCGCTGCCCTGGCCGTGTTCTGTGCCGTTAAGGCGC 396
consensus_6974#1      CATGAAGCACGTGATTGTTCTTTT-CGCTGCCCTGGCCGTGTTCTGTGCCGTTAAGGCGC 241
                             *    ************ ***********************************

consensus_6974#0      AGGATGAGGTGCAAGTCATAAGCTTTAACAACGACAACAACGTCGATGGAAGCTACCAA- 471
consensus_6974#2      AGGATGAGGTGCAAGTCATAAGCTTTAACAACGACAACAACGTCGATGGAAGCTACCAAA 456
consensus_6974#1      AGGATGAGGTGCAAGTCATAAGCTTTAACAACGACAACAACGTCGATGGAAGCTACCAA- 300
                      *********************************************************** 

consensus_6974#0      TTTGCCTACGAACAGAGCGATGGCCAAAAGCGGGAGGAAAAGGGTGAGCTGAAGCCGGTG 531
consensus_6974#2      TTTGCGTAAGTTTCAACCCATGCTT----TCGCCATGAAA--------TTTATCCCTTTT 504
consensus_6974#1      TTTGCCTACGAACAGAGCGATGGCCAAAAGCGGGAGGAAAAGGGTGAGCTGAAGCCGGTG 360
                      ***** ** *     * * ***        **  * ****         * *  **  * 

consensus_6974#0      GAAGGATCCGACGAGCCAGCCCTGTCCGTGAAAGGTTCGTACGAGTATACCGACTCGAAT 591
consensus_6974#2      CGATTGTTT------TTGGCACTATCGTGGTGGCATTTATGGGGGTTTN---ACTAATGT 555
consensus_6974#1      GAAGGATCCGACGAGCCAGCCCTGTCCGTGAAAGGTTCGTACGAGTATACCGACTCGAAT 420
                        *   *           ** ** **   *     **  *  * ** *    ***    *

consensus_6974#0      GGACAGCGATACCGGGTGGACTATGTTGCTGACGAGCGANGATACCGCCCGACGGTGACC 651
consensus_6974#2      GAGTTTCGTTAATCTTTGAACTGCN------ACAGACTACGA-ACAGAGCGATGGCAA-- 606
consensus_6974#1      GGACAGCGATACCGGGTGGACTATGTTGCTGACGAGCGAGGATACCGCCCGACGGTGACC 480
                      *     ** **     ** ***         **   * * ** ** *  *** **  *  

consensus_6974#0      AAGCTGTAAGATGCGGAGACGGTACAGCCTCGCCATCACAAGCACAAACACTCAGTGAGA 711
consensus_6974#2      AAGCGGGAGGAAAAG--------------------------------------------- 621
consensus_6974#1      AAGCTGTAAGATGCGGAGACGGTACAGCCTCGCCATCACAAGCACAAACACTCAGTGAGA 540
                      **** * * **   *                                             

consensus_6974#0      T----------------------------------------------------------- 712
consensus_6974#2      ------------------------------------------------------------
consensus_6974#1      TTCAAATGCCACAAACAGTATGTAAAAAAAAGTGAATAAAGTTGTGAACAATGTAAAAAA 600
                                                                                  

consensus_6974#0      ---------------------------------------
consensus_6974#2      ---------------------------------------
consensus_6974#1      AAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGG 639