|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6995#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1136 fasta sequence
[CCGCCGATCTCGATCGTGAGCATCGCGAGCTGCCCAGGAACTAGTTTGCTGTGGCGCGAAAAAGTGGCAAAAAAGTATTATCATAATAAGTTTGTGGTTATGGTGCAACTTTAGGGTGTGAATTTTGAAAACAGAGAACGAAAAAGTTTGAAAAGTTACTTACTTACATATAATAAACGAACGACCATGGCAACCATAGAGCAGCTGGGCTACAGTGCATTCTTCATTGCGCTTACCTGCATCTTCGCAATCGTAGCGCGCCGCCTGAACGAACGCATGTCGAAAGATGGGCTGGTGAAGGATTTAATTTTCGAGGCGATAGCAGCGGCAGAACTGTGCGGATGTTGCTTCGAGCTGATAATTGTGGCGGACAATTTTGGCGTCGCGACGTACGCGGTGTTCCTGTTTACGCTTACCATTTGGTGGGGCCGCAACTGGGGCTCGGCTACCGCCTGCCCTTACACCTACATGGAACAGATTGTCGAAGGTGAGGTAAGCTTCAAGGAGGCTTCGCTCAAGATCTGGGCCCAGCTGATGGGAGGCTGCTGCATATTCCGCTACGTGCAGCTGTATTGGTGGTTTGAGCTGGCAGAAACTCACGAAGGCCGTGCCTTCGAAGACTGCAAGGCGGACCTACAGGTGAACCAGTACCTCGGTGCGTTCATCGAAGGTTTTG-CGACGCTCTGCTGCCGGCTCGCATCGAAAGTGATCTCGGAGAAGGATGCCCGGTTCGGTGCGTTCATCGATTCGTTCATCGGAACGAGCCTGGTTGTTGCCGCGTTCAACTACTCGGGCGGCTACTTCAACCCGGTGCTGGCGACCGCCCTGAAGTGGGGCTGTGCGGGCAATTCCGCCCTCGAGCATATCATCGTCTACTGGATTGGATCGTGCATGGGTGCGGTGCTTTCGGTGCCACTGTTCAAGACGGCCACCTTCCGCAACATGTTCCTGACCGACACCAAGACCAAGAGCGAATAAGATGGATGACATGAGGGGGGAGGGGGGGGGGCGGTGCTTCAATAAGCGAAACCAATTTCTAGTCAACGAATGAAGCCTGTGGAAGGTTTATTTATACAACGTTTATTCAATCCTTTGAATTCTTCTACCCCTACAAGCGGCTAGCTACGAGATCTAAC]
[+] EMBL BM624218 [CCGCCGATCTCGATCGTGAGCATCGCGAGCTGCCCAGGAACTAGTTTGCTGTGGCGCGAAAAAGTGGCAAAAAAGTATTATCATAATAAGTTTGTGGTTATGGTGCAACTTTAGGGTGTGAATTTTGAAAACAGAGAACGAAAAAGTTTGAAAAGTTACTTACTTACATATAATAAACGAACGACCATGGCAACCATAGAGCAGCTGGGCTACAGTGCATTCTTCATTGCGCTTACCTGCATCTTCGCAATCGTAGCGCGCCGCCTGAACGAACGCATGTCGAAAGATGGGCTGGTGAAGGATTTAATTTTCGAGGCGATAGCAGCGGCAGAACTGTGCGGATGTTGCTTCGAGCTGATAATTGTGGCGGACAATTTTGGCGTCGCGACGTACGCGGTGTTCCTGTTTACGCTTACCATTTGGTGGGGCCGCAACTGGGGCTCGGCTACCGCCTGCCCTTACACCTACATGGAACAGATTGTCGAAGGTGAGGTAAGCTTCAAGGAGGCTTCGCTCAAGATCTGGGCCCAGCTGATGGGAGGCTGCTGCATATTCCGCTACGTTCAACTGTATTGGTGGTTTGAGCTGGCAGAAACTCACGAAGGCCGTGCCTTCGAAGACTGCAAGGCGGACCTGCAGGTGAACCAGTACCTCGGTGCGTTCA ]
[+] EMBL BX610614 [ GCGACGTACGCGGTGTTCCTGTTTACGCTTACCATTTGGTGGGGCCGCAACTGGGGCTCGGCTACCGCCTGCCCTTACACCTACATGGAACAGATTGTCGAAGGTGAGGTAAGCTTCAAGGAGGCTTCGCTCAAGATCTGGGCCCAGCTGATGGGAGGCTGCTGCATATTCCGCTACGTGCAGCTGTATTGGTGGTTTGAGCTGGCAGAAACTCACGAAGGCCGTGCCTTCGAAGACTGCAAGGCGGACCTACAGGTGAACCAGTACCTCGGTGCGTTCATCGAAGGTTTTG CGACGCTCTGCTGCCGGCTCGCATCGAAAGTGATCTCGGAGAAGGATGCCCGGTTCGGTGCGTTCATCGATTCGTTCATCGGAACGAGCCTGGTTGTTGCCGCGTTCAACTACTCGGGCGGCTACTTCAACCCGGTGCTGGCGACCGCCCTGAAGTGGGGCTGTGCGGGCAATTCCGCCCTCGAGCATATCATCGTCTACTGGATTGGATCGTGCATGGGTGCGGTGCTTTCGG ]
[+] EMBL BX622879 [ TACGCGGTGTTCCTGTTTACGCTTACCATTTGGTGGGGCCGCAACTGGGGCTCGGCTACCGCCTGCCCTTACACCTACATGGAACAGATTGTCGAAGGTGAGGTAAGCTTCAAGGAGGCTTCGCTCAAGATCTGGGCCCAGCTGATGGGAGGCTGCTGCATATTCCGCTACGTGCAGCTGTATTGGTGGTTTGAGCTGGCAGAAACTCACGAAGGCCGTGCCTTCGAAGACTGCAAGGCGGACCTACAGGTGAACCAGTACCTCGGTGCGTTCATCGAAGGTTTTG CGACGCTCTGCTGCCGGCTCGCATCGAAAGTGATCTCGGAGAAGGATGCCCGGTTCGGTGCGTTCATCGATTCGTTCATCGGAACGAGCCTGGTTGTTGCCGCGTTCAACTACTCGGGCGGCTACTTCAACCCGGTGCTGGCGACCGCCCTGAAGTGGGGCTGTGCGGGCAATTCCGCCCTCGAGCATATCATCGTCTACTGGATTGGATCGTGCATGGGTGCGGTGCTTTCGGTGCCACTGTTCAAGACGGCCACCTTCCGCAACATGTTCCTGACCGACACCAAGACCAAGAGCGAATAAGATGGAT ]
[+] EMBL BX610613 [ CGGCTACCGCCTGCCCTTACACCTACATGGAACAGATTGTCGAAGGTGAGGTAAGCTTCAAGGAGGCTTCGCTCAAGATCTGGGCCCAGCTGATGGGAGGCTGCTGCATATTCCGCTACGTGCAGCTGTATTGGTGGTTTGAGCTGGCAGAAACTCACGAAGGCCGTGCCTTCGAAGACTGCAAGGCGGACCTACAGGTGAACCAGTACCTCGGTGCGTTCATCGAAGGTTTTGTCTACGCTCTGCTGCCGGCTCGCATCGAAAGTGATCTCGGAGAAGGATGCCCGGTTCGGTGCGTTCATCGATTCGTTCATCGGAACGAGCCTGGTTGTTGCCGCGTTCAACTACTCGGGCGGCTACTTCAACCCGGTGCTGGCGACCGCCCTGAAGTGGGGCTGTGCGGGCAATTCCGCCCTCGAGCATATCATCGTCTACTGGATTGGATCGTGCATGGGTGCGGTGCTTTCGGTGCCACTGTTCAAGACGGCCACCTTCCGCAACATGTTCCT ]
[+] EMBL BX626654 [ GCTTCGCTCAAGATCTGGGCCCAGCTGATGGGAGGCTGCTGCATATTCCGCTACGTGCAGCTGTATTGGTGGTTTGAGCTGGCAGAAACTCACGAAGGCCGTGCCTTCGAAGACTGCAAGGCGGACCTACAGGTGAACCAGTACCTCGGTGCGTTCATCGAAGGTTTTG CGACGCTCTGCTGCCGGCTCGCATCGAAAGTGATCTCGGAGAAGGATGCCCGGTTCGGTGCGTTCATCGATTCGTTCATCGGAACGAGCCTGGTTGTTGCCGCGTTCAACTACTCGGGCGGCTACTTCAACCCGGTGCTGGCGACCGCCCTGAAGTGGGGCTGTGCGGGCAATTCCGCCCTCGAGCATATCATCGTCTACTGGATTGGATCGTGCATGGGTGCGGTGCTTTCGGTGCCACTGTTCAAGACGGCCACCTTCCGCAACATGTTCCTGACCGACACCAAGACCAAGAGCGAATAAGATGGATGACATGAGGGGGGAGGGGGGGGGGCGGTGCTTCAATAAGCGAAACCAATTTCTAGTCAACGAATGAAGCCTGTGGAAGGTTTATTTATACAACGTTTATTCAATCCTTTGAATTCTTCTACCCCTACAAGCGGCTAGCTACGAGATCTAAC]
consensusID : consensus_6995#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 293 fasta sequence
[GGCCAAAGAAATGCNAGAGGGTNACTCAGAGGCTCGCTTCAGATCTGTGCCAGCTGATGGGAGGCTGCTGCATATCCGCTACGTGCAGCTGTATTGGTGGTTTGAGCTGGCGAGAAACTCACGAAGGCCGTGCCTTCGAAGACTGCAAGGGCGGACCTACAGGTGAACCAGTACCTCGGTGCGTTCATCGAAGGTTTTGCGACGCTCTGCTGCCGGCTCGCATCGAAAGTGATCTCGGAGAAGGATGCCCGGTTCGGTGCCGTTCATCGATTCGTTCATCGGGAACGAGCCTG]
[+] EMBL AL929756 [GGCCAAAGAAATGCNAGAGGGTNACTCAGAGGCTCGCTTCAGATCTGTGCCAGCTGATGGGAGGCTGCTGCATATCCGCTACGTGCAGCTGTATTGGTGGTTTGAGCTGGCGAGAAACTCACGAAGGCCGTGCCTTCGAAGACTGCAAGGGCGGACCTACAGGTGAACCAGTACCTCGGTGCGTTCATCGAAGGTTTTGCGACGCTCTGCTGCCGGCTCGCATCGAAAGTGATCTCGGAGAAGGATGCCCGGTTCGGTGCCGTTCATCGATTCGTTCATCGGGAACGAGCCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6995#0 CCGCCGATCTCGATCGTGAGCATCGCGAGCTGCCCAGGAACTAGTTTGCTGTGGCGCGAA 60
consensus_6995#1 ------------------------------------------------------------
consensus_6995#0 AAAGTGGCAAAAAAGTATTATCATAATAAGTTTGTGGTTATGGTGCAACTTTAGGGTGTG 120
consensus_6995#1 ------------------------------------------------------------
consensus_6995#0 AATTTTGAAAACAGAGAACGAAAAAGTTTGAAAAGTTACTTACTTACATATAATAAACGA 180
consensus_6995#1 ------------------------------------------------------------
consensus_6995#0 ACGACCATGGCAACCATAGAGCAGCTGGGCTACAGTGCATTCTTCATTGCGCTTACCTGC 240
consensus_6995#1 ------------------------------------------------------------
consensus_6995#0 ATCTTCGCAATCGTAGCGCGCCGCCTGAACGAACGCATGTCGAAAGATGGGCTGGTGAAG 300
consensus_6995#1 ------------------------------------------------------------
consensus_6995#0 GATTTAATTTTCGAGGCGATAGCAGCGGCAGAACTGTGCGGATGTTGCTTCGAGCTGATA 360
consensus_6995#1 ------------------------------------------------------------
consensus_6995#0 ATTGTGGCGGACAATTTTGGCGTCGCGACGTACGCGGTGTTCCTGTTTACGCTTACCATT 420
consensus_6995#1 ------------------------------------------------------------
consensus_6995#0 TGGTGGGGCCGCAACTGGGGCTCGGCTACCGCCTGCCCTTACACCTACATGGAACAGATT 480
consensus_6995#1 --------------------------------------------------------GGCC 4
*
consensus_6995#0 GTCGAAGGTGAGGTAAGCTTCAAGGAGGCTTCGCTCAAGATCTGGGCCCAGCTGATGGGA 540
consensus_6995#1 AAAGAAATGCNAGAGGGTNACTCAGAGGCT-CGCTTCAGATCTGTGCC-AGCTGATGGGA 62
*** * * * ****** **** ******* *** ***********
consensus_6995#0 GGCTGCTGCATATTCCGCTACGTGCAGCTGTATTGGTGGTTTGAGCTGGC-AGAAACTCA 599
consensus_6995#1 GGCTGCTGCATAT-CCGCTACGTGCAGCTGTATTGGTGGTTTGAGCTGGCGAGAAACTCA 121
************* ************************************ *********
consensus_6995#0 CGAAGGCCGTGCCTTCGAAGACTGCAAGG-CGGACCTACAGGTGAACCAGTACCTCGGTG 658
consensus_6995#1 CGAAGGCCGTGCCTTCGAAGACTGCAAGGGCGGACCTACAGGTGAACCAGTACCTCGGTG 181
***************************** ******************************
consensus_6995#0 CGTTCATCGAAGGTTTTGCGACGCTCTGCTGCCGGCTCGCATCGAAAGTGATCTCGGAGA 718
consensus_6995#1 CGTTCATCGAAGGTTTTGCGACGCTCTGCTGCCGGCTCGCATCGAAAGTGATCTCGGAGA 241
************************************************************
consensus_6995#0 AGGATGCCCGGTTCGGTGC-GTTCATCGATTCGTTCATCGG-AACGAGCCTGGTTGTTGC 776
consensus_6995#1 AGGATGCCCGGTTCGGTGCCGTTCATCGATTCGTTCATCGGGAACGAGCCTG-------- 293
******************* ********************* **********
consensus_6995#0 CGCGTTCAACTACTCGGGCGGCTACTTCAACCCGGTGCTGGCGACCGCCCTGAAGTGGGG 836
consensus_6995#1 ------------------------------------------------------------
consensus_6995#0 CTGTGCGGGCAATTCCGCCCTCGAGCATATCATCGTCTACTGGATTGGATCGTGCATGGG 896
consensus_6995#1 ------------------------------------------------------------
consensus_6995#0 TGCGGTGCTTTCGGTGCCACTGTTCAAGACGGCCACCTTCCGCAACATGTTCCTGACCGA 956
consensus_6995#1 ------------------------------------------------------------
consensus_6995#0 CACCAAGACCAAGAGCGAATAAGATGGATGACATGAGGGGGGAGGGGGGGGGGCGGTGCT 1016
consensus_6995#1 ------------------------------------------------------------
consensus_6995#0 TCAATAAGCGAAACCAATTTCTAGTCAACGAATGAAGCCTGTGGAAGGTTTATTTATACA 1076
consensus_6995#1 ------------------------------------------------------------
consensus_6995#0 ACGTTTATTCAATCCTTTGAATTCTTCTACCCCTACAAGCGGCTAGCTACGAGATCTAAC 1136
consensus_6995#1 ------------------------------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||