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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6999#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1058 fasta sequence
[AGATGGCGGCCGCACTGTTCAGTGCCGGTTTCGAGGTGCACGACGTGGTCATGAACGATCTGCTGCAGGGCCGCACAACGCTCGATCGCTACCGTGTTATCGTGTTTCCGGGTGGATTCAGTTACGCCGACACGCTCGGTTCGGCCAAGGGCTGGGCGGCCTGCATCCAGTACAACGGTACGATCGCACCACAGTTCGAGCACTTCCGGCAACGCGAGGACACGTTCTCGCTCGGTGTCTGCAACGGCTGCCAGCTGATGGGACTGATCGGGTGGGTCGAGACGGGCCTGACACCGACGGCCGCCACGCCGACCGTGCCGGAAGTAGTGCTGGTCGGCAATCGGTCGGAGAAGTTCGAAAGCCGCTGGGTGACGCTGCGTGTTCCGGCGAGCCGGTCGATCATGCTACGCCGCCTGGCGGGCAGTGTGCTCGGCTGCTGGGTGGCCCATGGTGAGGGTCGGTTCTCGTTCCGTACCGATGCGAGCCGCGACCGGCTGGTGATGAGCCAGTGCGTTACGATGCAGTACGTGGACGATGCGAGCAATCCGACCGAGCAGTACCCGATGAATCCGAACGGCAGCCCGATGGGCATTGCGGGCGTTTGCTCGCCGGACGGGCGCCACCTGGCCATCATGCCCCACCCGGAGCGTTGCGTGCAGATGTGGCAGTGGCCGTACGTAACCGCCGATTTCCCGTGCAAAAACGCCGCCCCCT-GGATGTCGATGTTCCAGGAGGCGTACCTGTGGTGCAGTGGGCAGCAACAGTAAAGCAATACCCTTCCACACACACACACACACACACACACACACCCGAAAAGAACATTCCCCAGCGGGCACGGAGCGCAAGGTGTGGTGGCAGCACTAATCCTTTGCTTTCACCTTTCGATCCGATCATCGCTGTTGCCTTTTGCAAATTTAATTGAAGTGCTTTACTGATAAAGCTAAAAGCTTCCCCGTTTCCGCCGTTTTATTCCCCGCGCGCCCACCACTGGCCTTTGGGATGGCAGTGTCTTATAGTTTAAGTATCCAGCTCCGCATGTAACGGTAGCAGCTCGTAGC]
[+] EMBL BX610362 [AGATGGCGGCCGCACTGTTCAGTGCCGGTTTCGAGGTGCACGACGTGGTCATGAACGATCTGCTGCAGGGCCGCACAACGCTCGATCGCTACCGTGTTATCGTGTTTCCGGGTGGATTCAGTTACGCCGACACGCTCGGTTCGGCCAAGGGCTGGGCGGCCTGCATCCAGTACAACGGTACGATCGCACCACAGTTCGAGCACTTCCGGCAACGCGAGGACACGTTCTCGCTCGGTGTCTGCAACGGCTGCCAGCTGATGGGACTGATCGGGTGGGTCGAGACGGGCCTGACACCGACGGCCGCCACGCCGACCGTGCCGGAAGTAGTGCTGGTCGGCAATCGGTCGGAGAAGTTCGAAAGCCGCTGGGTGACGCTGCGTGTTCCGGCGAGCCGGTCGATCATGCTACGCCGCCTGGCGGGCAGTGTGCTCGGCTGCTGGGTGGCCCATGGTGAGGGTCGGTTCTCGTTCCGTACCGATGCGAGCCGCGACCGGCTGGTGATGAGCCAGTGCGTTACGATGCAGTACGTGGACGATGCGAGCAATCCGACCGAGCA ]
[+] EMBL AGA281537 [ TGCCGGTTTCGAGGTGCACGACGTGGTCATGAACGATCTGCTGCAGGGCCGCACAACGCTCGATCGCTACCGTGGTATCGTGTTTCCGGGTGGATTCAGTTACGCCGACACGCTCGGTTCGGCCAAGGGCTGGGCGGCCTGCATCCAGTACAACGGTACGATCGCACCACAGTTCGAGCACTTCCGGCAACGCGAGGACACGTTCTCGCTCGGTGTCTGCAACGGCTGCCAGCTGATGGGACTGATCGGGTGGGTCGAGACGGGCCTGACACCGACGGCCGCCACGCCGACCGTGCCGGAAGTAGTGCTGGTCGGCAATCGGTCGGAGAAGTTCGAAAGCCGCTGGGTGACGCTGCGTGTTCCGGCGAGCCGGTCGATCATGCTACGCCGCCTGGCGGNCAGTGTGCTCGGCTGCTGGGTGGCCCATGGTGAGGGTCGGTTCTCGTTCCGTACCGATGCGAGCCGCGACCGGCTGGTGATGAGCCAGTGCGTTACGATGCAGTACGTGGACGATGCGAGCAATCCGACCGAGCAGTACCCGATGAATCCGAACGGCAGCCCGATGG ]
[+] EMBL BX613733 [ TCTCGCTCGGTGTCTGCAACGGCTGCCAGCTGATGGGACTGATCGGGTGGGTCGAGACGGGCCTGACACCGACGGCCGCCACGCCGACCGTGCCGGAAGTAGTGCTGGTCGGCAATCGGTCGGAGAAGTTCGAAAGCCGCTGGGTGACGCTGCGTGTTCCGGCGAGCCGGTCGATCATGCTACGCCGCCTGGCGGGCAGTGTGCTCGGCTGCTGGGTGGCCCATGGTGAGGGTCGGTTCTCGTTCCGTACCGATGCGAGCCGCGACCGGCTGGTGATGAGCCAGTGCGTTACGATGCAGTACGTGGACGATGCGAGCAATCCGACCGAGCAGTACCCGATGAATCCGAACGGCAGCCCGATGGGCATTGCGGGCGTTTGCTCGCCGGACGGGCGCCACCTGGCCATCATGCCCCACCCGGAGCGTTGCGTGCAGATGTGGCAGTGGCCGTACGTAACCGCCGATTTCCCGTGCAAAAACGCCGCCCCCT GGATGTCGATGT ]
[+] EMBL BM610678 [ ccgCCATGGTGAGGGTCGGTTCTCGTTCCGTACCGATGCGAGCCGCGACCGGCTGGTGATGAGCCAGTGCGTTACGATGCAGTACGTGGACGATGCGAGCAATCCGACCGAGCAGTACCCGATGAATCCGAACGGCAGCCCGATGGGCATTGCGGGCGTTTGCTCGCCGGACGGGCGCCACCTGGCCATCATGCCCCACCCGGAGCGTTGCGTGCAGATGTGGCAGTGGCCGTACGTAACCGCCGATTTCCCGTGCAAAAACGCCGCCCCCTGGGATGTCGATGTTCCAGGAGGCGTACCTGTGGTGCAGTGGGCAGCAACAGTAAAGCAATACCCTTCCACACACACACACACACACACACACACACCCGAAAAGAACATTCCCCAGCGGGCACGGAGCGCAAGGTGTGGTGGCAGCACTAATCCTTTGCTTTCACCTTTCGATCCGATCATCGCTGTTGCCTTTTGCAAATTTAATTGAAGTGCTTTACTGATAAAGCTAAAAGCTTCCCCGTTTCCGCCGTTTTATTCCCCGCGCGCCCACCACTGGCCTTTGGGATGGCAGTGTCTTATAGTTTAAGTATCCAGCTCCGCATGTAACGGTAGCAGCTCGTAGC]
consensusID : consensus_6999#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 697 fasta sequence
[AGCAGACCGGNGATATGAGATTGTGGCTGACTGTTCAGTGTCTGGTTTTGAGGTGCACGACGTGGTCATGAACGATCTGCTGCAGGGGCCGCACAACGCTCGATCGCTACCGTGGTATCGTGTTTCCTGGGTGGATTCAGTTACGCCGACACTGCTCGTGTATCTGTGCCAAGGTGCTGGTGCTGTGCCTGCATCCAGTACAACTGGTACGATCGCACCACAGTTCGAGCACTTCCGGCAACGGCGAGGACACGTTCTCGCTCGGTGTCTGCAAACGGCTGCCAGCTGATGGGACTGATCAGGGTTGGGTCTGAGACGGGCCTTGACACCGACGGNCGCACGCCGACGTGCCGGAAGTATGTGCTGGTCGGCAAATCGGTNCGGAGCAAGTTCGGACAAGCCGCTGGGTTGACGCTGCGTTGTTCCGGCGAGCCTGGTCGNATCATTGCTACCGCCGCCTGGCTGGGCGCAGGTGTGCTCGTGGCTTGCTGCGGTTGGCCCATGGTGAGGGTCAGGTTCTCGTTCCGTACCGATGCGACGCCGCGCACGGGCTGGCTGATGAGCCCAGCTGCCGTAACGATGCAGTACGTTGGACGATGCGAGCAATACCGACCGAGCAGTACCGATGAATCGAACGGCAAGCCGAATGGGCCATTGCGGCCGTTTGNTCGCCGGACGGGCAGCCANCTGGCATCAT]
[+] EMBL AL693081 [AGCAGACCGGNGATATGAGATTGTGGCTGACTGTTCAGTGTCTGGTTTTGAGGTGCACGACGTGGTCATGAACGATCTGCTGCAGGGGCCGCACAACGCTCGATCGCTACCGTGGTATCGTGTTTCCTGGGTGGATTCAGTTACGCCGACACTGCTCGTGTATCTGTGCCAAGGTGCTGGTGCTGTGCCTGCATCCAGTACAACTGGTACGATCGCACCACAGTTCGAGCACTTCCGGCAACGGCGAGGACACGTTCTCGCTCGGTGTCTGCAAACGGCTGCCAGCTGATGGGACTGATCAGGGTTGGGTCTGAGACGGGCCTTGACACCGACGGNCGCACGCCGACGTGCCGGAAGTATGTGCTGGTCGGCAAATCGGTNCGGAGCAAGTTCGGACAAGCCGCTGGGTTGACGCTGCGTTGTTCCGGCGAGCCTGGTCGNATCATTGCTACCGCCGCCTGGCTGGGCGCAGGTGTGCTCGTGGCTTGCTGCGGTTGGCCCATGGTGAGGGTCAGGTTCTCGTTCCGTACCGATGCGACGCCGCGCACGGGCTGGCTGATGAGCCCAGCTGCCGTAACGATGCAGTACGTTGGACGATGCGAGCAATACCGACCGAGCAGTACCGATGAATCGAACGGCAAGCCGAATGGGCCATTGCGGCCGTTTGNTCGCCGGACGGGCAGCCANCTGGCATCAT]
consensusID : consensus_6999#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 670 fasta sequence
[CCGGCGGCCTGCATCCAGTACAACGGTACGATCGCACCACAGTTCGAGCACTTCCGGCAGCGCGAGGACACGTTCTCGCTCGGTGTCTGCAACGGCTGCCAGCTGATGGGACTGATCGGGTGGGTCGAGACGGGCCTGACACCGACGGCCGCCACGCCGACCGTGCCGGAAGTAGTGTTGGTCGGCAATCGGTCGGAGAAGTTCGAAAGCCGCTGGGTGACGCTGCGTGTTCCGGCGAGCCGGTCGATCATGCTACGCCGCCTGGCGGGCAGTGTGCTCGGCTGCTGGGTGGCCCATGGTGAGGGTCGGTTCTCGTTCCGTACCGATGCGAGCCGCGACCGGCTGCTGATGAGCCAGTGCGTTACGATGCAGTACGTGGACGATGCGAGCAATCCGACCGAGCAGTACCCGATGAACCCGAACGGCAGCCCGCTGGGCATTGCGGGCGTTTGCTCGCCGGACGGGCGCCATCTGGCCATCATGCCCCACCCGGAGCGTTGCGTGCAGATGTGGCAGTGGCCGTACGTAACCGCCGATTTCCCGTGCAAAAACGCCGCCCCCTGGGATGTCGATGTTCCAGGAGGCGTACCCTGTGGTGCAGTGGGCAGCAACAGTAAAGCGATAACCTTTCATACACCTCAAAAGAACATTCCCCAGCGGGCACGGAAGC]
[+] EMBL BM593014 [CCGGCGGCCTGCATCCAGTACAACGGTACGATCGCACCACAGTTCGAGCACTTCCGGCAGCGCGAGGACACGTTCTCGCTCGGTGTCTGCAACGGCTGCCAGCTGATGGGACTGATCGGGTGGGTCGAGACGGGCCTGACACCGACGGCCGCCACGCCGACCGTGCCGGAAGTAGTGTTGGTCGGCAATCGGTCGGAGAAGTTCGAAAGCCGCTGGGTGACGCTGCGTGTTCCGGCGAGCCGGTCGATCATGCTACGCCGCCTGGCGGGCAGTGTGCTCGGCTGCTGGGTGGCCCATGGTGAGGGTCGGTTCTCGTTCCGTACCGATGCGAGCCGCGACCGGCTGCTGATGAGCCAGTGCGTTACGATGCAGTACGTGGACGATGCGAGCAATCCGACCGAGCAGTACCCGATGAACCCGAACGGCAGCCCGCTGGGCATTGCGGGCGTTTGCTCGCCGGACGGGCGCCATCTGGCCATCATGCCCCACCCGGAGCGTTGCGTGCAGATGTGGCAGTGGCCGTACGTAACCGCCGATTTCCCGTGCAAAAACGCCGCCCCCTGGGATGTCGATGTTCCAGGAGGCGTACCCTGTGGTGCAGTGGGCAGCAACAGTAAAGCGATAACCTTTCATACACCTCAAAAGAACATTCCCCAGCGGGCACGGAAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6999#0 ------------------------AGATGGCGGCCGCACTGTTCAGTGCCGGTTTCGAGG 36
consensus_6999#2 ------------------------------------------------------------
consensus_6999#1 AGCAGACCGGNGATATGAGATTGTGGCTGACTGTTCAGTGTCTGGTTTTGAGGTGCACGA 60
consensus_6999#0 TGCACGACGTGGTCATGAACGATCTGCTGCAGGGCCGCACAACGCTCGATCGCTACCGTG 96
consensus_6999#2 ------------------------------------------------------------
consensus_6999#1 CGTGGTCATGAACGATCTGCTGCAGGGGCCGCACAACGCTCGATCGCTACCGTGGTATCG 120
consensus_6999#0 TTATCGTGTTTCCGGGTGGATTCAGTTACGCCGACACGCTCGGTTCGGCCAAGGGCTGGG 156
consensus_6999#2 --------------------------------------------------------CCGG 4
consensus_6999#1 TGTTTCCTGGGTGGATTCAGTTACGCCGACACTGCTCGTGTATCTGTGCCAAGGTGCTGG 180
**
consensus_6999#0 CG----GCCTGCATCCAGTACAAC-GGTACGATCGCACCACAGTTCGAGCACTTCCGGCA 211
consensus_6999#2 CG----GCCTGCATCCAGTACAAC-GGTACGATCGCACCACAGTTCGAGCACTTCCGGCA 59
consensus_6999#1 TGCTGTGCCTGCATCCAGTACAACTGGTACGATCGCACCACAGTTCGAGCACTTCCGGCA 240
* ****************** ***********************************
consensus_6999#0 ACG-CGAGGACACGTTCTCGCTCGGTGTCTGCAA-CGGCTGCCAGCTGATGGGACTGATC 269
consensus_6999#2 GCG-CGAGGACACGTTCTCGCTCGGTGTCTGCAA-CGGCTGCCAGCTGATGGGACTGATC 117
consensus_6999#1 ACGGCGAGGACACGTTCTCGCTCGGTGTCTGCAAACGGCTGCCAGCTGATGGGACTGATC 300
** ****************************** *************************
consensus_6999#0 GGG--TGGGTC-GAGACGGGCCT-GACACCGACGGCCGCCACGCCGACCGTGCCGGAAGT 325
consensus_6999#2 GGG--TGGGTC-GAGACGGGCCT-GACACCGACGGCCGCCACGCCGACCGTGCCGGAAGT 173
consensus_6999#1 AGGGTTGGGTCTGAGACGGGCCTTGACACCGACGGNCGC-ACGCCGAC-GTGCCGGAAGT 358
** ****** *********** *********** *** ******** ***********
consensus_6999#0 A-GTGCTGGTCGGCAA-TCGGTC-GGAG-AAGTTCGAA--AGCCGCTGGGT-GACGCTGC 378
consensus_6999#2 A-GTGTTGGTCGGCAA-TCGGTC-GGAG-AAGTTCGAA--AGCCGCTGGGT-GACGCTGC 226
consensus_6999#1 ATGTGCTGGTCGGCAAATCGGTNCGGAGCAAGTTCGGACAAGCCGCTGGGTTGACGCTGC 418
* *** ********** ***** **** ******* * *********** ********
consensus_6999#0 GT-GTTCCGGCGAGCC-GGTCGA-TCAT-GCTAC-GCCGCCTGGC-GGGCA---GTGTGC 429
consensus_6999#2 GT-GTTCCGGCGAGCC-GGTCGA-TCAT-GCTAC-GCCGCCTGGC-GGGCA---GTGTGC 277
consensus_6999#1 GTTGTTCCGGCGAGCCTGGTCGNATCATTGCTACCGCCGCCTGGCTGGGCGCAGGTGTGC 478
** ************* ***** **** ***** ********** **** ******
consensus_6999#0 TCGG---CTGCTGGG--TGGCCCATGGTGAGGGTC-GGTTCTCGTTCCGTACCGATGCGA 483
consensus_6999#2 TCGG---CTGCTGGG--TGGCCCATGGTGAGGGTC-GGTTCTCGTTCCGTACCGATGCGA 331
consensus_6999#1 TCGTGGCTTGCTGCGGTTGGCCCATGGTGAGGGTCAGGTTCTCGTTCCGTACCGATGCGA 538
*** ***** * ****************** ************************
consensus_6999#0 -GCCGCG-ACCGGCTG-GTGATGAGCCAG--TGC-GTTACGATGCAGTACGT-GGACGAT 536
consensus_6999#2 -GCCGCG-ACCGGCTG-CTGATGAGCCAG--TGC-GTTACGATGCAGTACGT-GGACGAT 384
consensus_6999#1 CGCCGCGCACGGGCTGGCTGATGAGCCCAGCTGCCGTAACGATGCAGTACGTTGGACGAT 598
****** ** ***** ********* *** ** ************** *******
consensus_6999#0 GCGAGCAAT-CCGACCGAGCAGTACCCGATGAATCCGAACGGCAGCCCG--ATGGGCATT 593
consensus_6999#2 GCGAGCAAT-CCGACCGAGCAGTACCCGATGAACCCGAACGGCAGCCCG--CTGGGCATT 441
consensus_6999#1 GCGAGCAATACCGACCGAGCAGTACC-GATGAATC-GAACGGCAAGCCGAATGGGCCATT 656
********* **************** ****** * ******** *** ** ****
consensus_6999#0 GCGGGCGTTTGCTCGCCGGACGGGC-GCCACCTGGCCATCATGCCCCACCCGGAGCGTTG 652
consensus_6999#2 GCGGGCGTTTGCTCGCCGGACGGGC-GCCATCTGGCCATCATGCCCCACCCGGAGCGTTG 500
consensus_6999#1 GCGGCCGTTTGNTCGCCGGACGGGCAGCCANCTGGC-ATCAT------------------ 697
**** ****** ************* **** ***** *****
consensus_6999#0 CGTGCAGATGTGGCAGTGGCCGTACGTAACCGCCGATTTCCCGTGCAAAAACGCCGCCCC 712
consensus_6999#2 CGTGCAGATGTGGCAGTGGCCGTACGTAACCGCCGATTTCCCGTGCAAAAACGCCGCCCC 560
consensus_6999#1 ------------------------------------------------------------
consensus_6999#0 CTGG-ATGTCGATGTTCCAGGAGGCGTACC-TGTGGTGCAGTGGGCAGCAACAGTAAAGC 770
consensus_6999#2 CTGGGATGTCGATGTTCCAGGAGGCGTACCCTGTGGTGCAGTGGGCAGCAACAGTAAAGC 620
consensus_6999#1 ------------------------------------------------------------
consensus_6999#0 AATACCCTTCCACACACACACACACACACACACACACACCCGAAAAGAACATTCCCCAGC 830
consensus_6999#2 GATAACCTTTCATACAC----------------------CTCAAAAGAACATTCCCCAGC 658
consensus_6999#1 ------------------------------------------------------------
consensus_6999#0 GGGCACGGAGCGCAAGGTGTGGTGGCAGCACTAATCCTTTGCTTTCACCTTTCGATCCGA 890
consensus_6999#2 GGGCACGGAA-GC----------------------------------------------- 670
consensus_6999#1 ------------------------------------------------------------
consensus_6999#0 TCATCGCTGTTGCCTTTTGCAAATTTAATTGAAGTGCTTTACTGATAAAGCTAAAAGCTT 950
consensus_6999#2 ------------------------------------------------------------
consensus_6999#1 ------------------------------------------------------------
consensus_6999#0 CCCCGTTTCCGCCGTTTTATTCCCCGCGCGCCCACCACTGGCCTTTGGGATGGCAGTGTC 1010
consensus_6999#2 ------------------------------------------------------------
consensus_6999#1 ------------------------------------------------------------
consensus_6999#0 TTATAGTTTAAGTATCCAGCTCCGCATGTAACGGTAGCAGCTCGTAGC 1058
consensus_6999#2 ------------------------------------------------
consensus_6999#1 ------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||