cluster # 7

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Anopheles gambiae
cluster # 7 cluster # 7 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7#0 length = 563 sequences # 1

consensus_7#1 length = 270 sequences # 1

consensusID : consensus_7#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 563
fasta sequence

                              [CCGCCTTCTTCTACATTGTGGCGGGCATAGATGGCGATAGATGTGATGGGAATTATAACAGAACTATAAATATATACATATACATATAGACATGCATACAAAATACATGTATTTACAATAAAAAGCTCTACATGTCCAAACGCTTACAACACAGAGATCACTGAATGAATTGGCAAAAAATGAGGGGGCGGGAAGGTGGTGGTAGTAGGGGCAGAAATAGGTAGGGTTATCAATTCATATTCGAGATATGCACATGACGCCATGCGTGTTTCAAAGGACTACTAACACTAAGACTTTTTGCCCTCATATCTTACAGCTTGATAAGCTTCATCATCGTTGTTGAACGTGTTTATTGTGTCAGTTTCCATCTTTTGCTTTGGTGCGATTCCTTAAGGAATCGGCGAACGCCACGACAGAGGTGTTTGTTGGGTAGAGTAAGGGATGAAACACTGATGCCGCCACACAGTGAATGCTAAAGCAACAGTCGTCATCCATTGCACTACTTTTTTCCAATTGCTACTCAAAGCGTAATGTATTTGTGTACATATAAACATATATATACA]

[+] EMBL BM632480             [CCGCCTTCTTCTACATTGTGGCGGGCATAGATGGCGATAGATGTGATGGGAATTATAACAGAACTATAAATATATACATATACATATAGACATGCATACAAAATACATGTATTTACAATAAAAAGCTCTACATGTCCAAACGCTTACAACACAGAGATCACTGAATGAATTGGCAAAAAATGAGGGGGCGGGAAGGTGGTGGTAGTAGGGGCAGAAATAGGTAGGGTTATCAATTCATATTCGAGATATGCACATGACGCCATGCGTGTTTCAAAGGACTACTAACACTAAGACTTTTTGCCCTCATATCTTACAGCTTGATAAGCTTCATCATCGTTGTTGAACGTGTTTATTGTGTCAGTTTCCATCTTTTGCTTTGGTGCGATTCCTTAAGGAATCGGCGAACGCCACGACAGAGGTGTTTGTTGGGTAGAGTAAGGGATGAAACACTGATGCCGCCACACAGTGAATGCTAAAGCAACAGTCGTCATCCATTGCACTACTTTTTTCCAATTGCTACTCAAAGCGTAATGTATTTGTGTACATATAAACATATATATACA]




>consensus_7#0
CCGCCTTCTTCTACATTGTGGCGGGCATAGATGGCGATAGATGTGATGGGAATTATAACA
GAACTATAAATATATACATATACATATAGACATGCATACAAAATACATGTATTTACAATA
AAAAGCTCTACATGTCCAAACGCTTACAACACAGAGATCACTGAATGAATTGGCAAAAAA
TGAGGGGGCGGGAAGGTGGTGGTAGTAGGGGCAGAAATAGGTAGGGTTATCAATTCATAT
TCGAGATATGCACATGACGCCATGCGTGTTTCAAAGGACTACTAACACTAAGACTTTTTG
CCCTCATATCTTACAGCTTGATAAGCTTCATCATCGTTGTTGAACGTGTTTATTGTGTCA
GTTTCCATCTTTTGCTTTGGTGCGATTCCTTAAGGAATCGGCGAACGCCACGACAGAGGT
GTTTGTTGGGTAGAGTAAGGGATGAAACACTGATGCCGCCACACAGTGAATGCTAAAGCA
ACAGTCGTCATCCATTGCACTACTTTTTTCCAATTGCTACTCAAAGCGTAATGTATTTGT
GTACATATAAACATATATATACA

consensusID : consensus_7#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 270
fasta sequence

                              [AGAATCGGCACGAGGGTCTATTCCTTAAGGAATCGGCGAACGCCACGACAGAGGTGTTTGTTGGGTAGACGTAAGGGATGAAACACTGATGCCGCCACACAGTGAATGCTAAAGCAACAGTCGGTCATCCATTGCACTACTTTTTTCCAATTGCTACTCAAAGCGTAATGTATTTGTGTTTCTGACTGTCGGTCGGACACAGCTGTGAAGAACTACGCGGCAAATGTTATGACTTCTGTAGGGCGCGCATATTAATGGTTTAGTAGCATT]

[+] EMBL BX469306             [AGAATCGGCACGAGGGTCTATTCCTTAAGGAATCGGCGAACGCCACGACAGAGGTGTTTGTTGGGTAGACGTAAGGGATGAAACACTGATGCCGCCACACAGTGAATGCTAAAGCAACAGTCGGTCATCCATTGCACTACTTTTTTCCAATTGCTACTCAAAGCGTAATGTATTTGTGTTTCTGACTGTCGGTCGGACACAGCTGTGAAGAACTACGCGGCAAATGTTATGACTTCTGTAGGGCGCGCATATTAATGGTTTAGTAGCATT]




>consensus_7#1
AGAATCGGCACGAGGGTCTATTCCTTAAGGAATCGGCGAACGCCACGACAGAGGTGTTTG
TTGGGTAGACGTAAGGGATGAAACACTGATGCCGCCACACAGTGAATGCTAAAGCAACAG
TCGGTCATCCATTGCACTACTTTTTTCCAATTGCTACTCAAAGCGTAATGTATTTGTGTT
TCTGACTGTCGGTCGGACACAGCTGTGAAGAACTACGCGGCAAATGTTATGACTTCTGTA
GGGCGCGCATATTAATGGTTTAGTAGCATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7#0      CCGCCTTCTTCTACATTGTGGCGGGCATAGATGGCGATAGATGTGATGGGAATTATAACA 60
consensus_7#1      ------------------------------------------------------------
                                                                               

consensus_7#0      GAACTATAAATATATACATATACATATAGACATGCATACAAAATACATGTATTTACAATA 120
consensus_7#1      ------------------------------------------------------------
                                                                               

consensus_7#0      AAAAGCTCTACATGTCCAAACGCTTACAACACAGAGATCACTGAATGAATTGGCAAAAAA 180
consensus_7#1      ------------------------------------------------------------
                                                                               

consensus_7#0      TGAGGGGGCGGGAAGGTGGTGGTAGTAGGGGCAGAAATAGGTAGGGTTATCAATTCATAT 240
consensus_7#1      ------------------------------------------------------------
                                                                               

consensus_7#0      TCGAGATATGCACATGACGCCATGCGTGTTTCAAAGGACTACTAACACTAAGACTTTTTG 300
consensus_7#1      ------------------------------------------------------------
                                                                               

consensus_7#0      CCCTCATATCTTACAGCTTGATAAGCTTCATCATCGTTGTTGAACGTGTTTATTGTGTCA 360
consensus_7#1      ------------------------------------------------------------
                                                                               

consensus_7#0      GTTTCCATCTTTTGCTTTGGTG-CGATTCCTTAAGGAATCGGCGAACGCCACGACAGAGG 419
consensus_7#1      ------AGAATCGGCACGAGGGTCTATTCCTTAAGGAATCGGCGAACGCCACGACAGAGG 54
                         *   *  **    * * * ***********************************

consensus_7#0      TGTTTGTTGGGTAGA-GTAAGGGATGAAACACTGATGCCGCCACACAGTGAATGCTAAAG 478
consensus_7#1      TGTTTGTTGGGTAGACGTAAGGGATGAAACACTGATGCCGCCACACAGTGAATGCTAAAG 114
                   *************** ********************************************

consensus_7#0      CAACAGTCG-TCATCCATTGCACTACTTTTTTCCAATTGCTACTCAAAGCGTAATGTATT 537
consensus_7#1      CAACAGTCGGTCATCCATTGCACTACTTTTTTCCAATTGCTACTCAAAGCGTAATGTATT 174
                   ********* **************************************************

consensus_7#0      TGTGTACAT-ATAAACATATATATACA--------------------------------- 563
consensus_7#1      TGTGTTTCTGACTGTCGGTCGGACACAGCTGTGAAGAACTACGCGGCAAATGTTATGACT 234
                   *****   * *    *      * ***                                 

consensus_7#0      ------------------------------------
consensus_7#1      TCTGTAGGGCGCGCATATTAATGGTTTAGTAGCATT 270