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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7007#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 794 fasta sequence
[CCGACGAACCGTCGCATCTAGCGGACACACA-AAAGAGCGGACGCAGAGCGCGCGAGAAACAAACACAGTGTTAGAAAGCACTACTTACGCGCGCCCTCGAATCCTCCACACGGTGCTGTGTGTGGTTGGTGAATATTTCAAGCGACGTCATTAGAGAAAGGCTAGCAGCCGGAAGCAAA-AGCAACCAGTACAAACTCAAACAAGAACACAAGTTACAAACGGTTACAATCGGTGCGAACTGATAGTTTCAGTAGGTTCGGGTGTTGTATGTGTGTATACGAAGGCAAGTGTGCTGTATCGCGTTGCGACCATTTCGAAGGTGATTATCGTTGGCGTTACACACTTTGACTTCGCAGTGTAGTGAACGAACCGCACCAGTGACATTAGCAAGGACAAAGCCCCGTCCCGTCTAGCTCGGTGTGGGAAAAGCAAAGTTCGAATCAAAGGATACACGGTCACCCGCACCTACCCCCATTAGCTCGGTCGGTGCTGACGCGAAGGCTCGCGCACGACCCGAAAACCGGGCCCGAAACCGAAGGGAAGGTTACGGATCGAGCAGCGTGTTTGCCAACAGCCCGCGGAAGCGCACGCTTGGCCTGGCAAATCTGGCAAGCGGCTTAAGCAAAAACTCGGGTACAAAAGGCGCTCGATTCAACGGTCCGCCCGACAGTATAGCGTGTGTAACGTGTGAGTGCTCTGGGAGCGTAGCCACGGGAAAAAAAGGACACTCGCGCCATTGGAAGGATCGTTGTGGTACCGGTCAGGACACACAGAAACATTTTGGGTTGCGTGCA]
[+] EMBL BM603115 [CCGACGAACCGTCGCATCTAGCGGACACACA AAAGAGCGGACGCAGAGCGCGCGAGAAACAAACACAGTGTTAGAAAGCACTACTTACGCGCGCCCTCGAATCCTCCACACGGTGCTGTGTGTGGTTGGTGAATATTTCAAGCGACGTCATTAGAGAAAGGCTAGCAGCAGGAAGCAAATAACAACCAGTACAAACTCAAACAAGAACACAAGTTACAAACGGTTACAATCGGTGCGAACTGATAGTTTCAGTAGGTTCGGGTGTTGTATGTGTGTATACGAAGGCAAGTGTGCTGTATCGCGTTGCGACCATTTCGAAGGTGATTATCGTTGGCGTTACACACTTTGACTTCGCAGTGTAGTGAACGAACCGCACCAGTGACATTAGCAAGGACAAAGCCCCGTCCCGTCTAGCTCGGTGTGGGAAAAGCAAAGTTCGAATCAAAGGATACACGGTCACCCGCACCTACCCCCATTAGCTCGGTCGGTGCTGACGCGAAGGCTCGCGCACGACCCGAAAACCGGGCCCGAAACCGAAGGGAAGGTTACGGATCGAGCAGCGTGTTTGCCAACAGCCCGCGGAAGCGCACGCTTGGCCTGGCAAATCTGGCAAGCGGCTTAAGCAAAAACTCGGG ]
[+] EMBL BX619163 [ gctGAACCGTCGCATCTAGCGGACACACACAAAGAGCGGCCGCAGAGCGCGCGAGAAACAAACACAGTGTTAGAAAGCACTACTTACGCGCGCCCTCGAATCCTCCACACGGTGCTGTGTGTGGTTGGTGAATATTTCAAGCGACGTCATTAGAGAAAGGCTAGCAGCCGGAAGCAAA AGCAACCAGnt ]
[+] EMBL BX623152 [ CGCGCGAGAAACAAACACAGTGTTAGAAAGCACTACTTACGCGCGCCCTCGAATCCTCCACACGGTGCTGTGTGTGGTTGGTGAATATTTCAAGCGACGTCATTAGAGAAAGGCTAGCAGCCGGAAGCAAA AGCAACCAGTACAAACTCAAACAAGAACACAAGTTACAAACGGTTACAATCGTTTCGAACTGATAGTTTCAGTAGGTTCGGGTGTTGTGTGTGTGTATACGAAGGCAAGTGTGCGGTATCGCTTTGCGACCATTTCGAAGGTGATTATCGTTGGCGTTACACACTTTGACTTCGCAGTGTAGTGAACGAACCGCACCAGTGACATTAGCAAGGACAAAGCCCCGTCCCGTCTAGCTCGGTGTGGGAAACGCAAAGTTCGAATCAAAGGATACACGGTCACCCGCACCTACCCCCATTGGCTCGGTCGGTGCTGACGCGAAGGCTCGCGCACGACCCGAAAATCGGGCCCGAAACCGAAGGGAAGGTTACGGATCGAGCAGCGTGTTTGCCAACAGCCCGCGGAAGCGCACGCTTGGCCTAGCAAATCTGGCAAGCGGCTTAAGC AAAACTCGGGTACAAAAGGCGCTCGATTCAACGGTCCGCCCGACAGTATAGCGTGTGTAACGTGTGAGTGCTCTGGGAGCGTAGCCACGGGAAAAAAAGGACACTCGCGCCATTGGAAGGATCGTTGTGGTACCGGTCAGGACACACAGAAACATTTTGGGTTGCGTGCA]
consensusID : consensus_7007#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 569 fasta sequence
[AGCAGAATCGCCCAGGCTTATACACAAAAGAGCGGCGCAGNCCGCGCGAGTAAACAACACAGTGTTAGAAAGCACTACTTACGCGCGCCCTCGAATCCTCCACACGGTGCTGTGTGTGGTTGGTGAATATTTCAAGCGACGTCATTAGAGAAAGTGCTAGCAGCCGGAAGCAAAGCAACCAGTACAAACTCAAACAAGAACACCAAGTTACCAACGGTTACAATCGTTTCGAACTGATAGTTTCAGTAGGTTCGGGTGTAAGTGTGTGTGTATACGAAGGCAAGTNNTGCGGTCATCGCTTTGCGACCATTTCGAAGGTGACTTANTCGTNGGCGTTACACACTTTGACTTCGCAGTGTAGTGANACGAACCGACCAGTGACATTAGCAAGGACANAAGGCCCCGATACCGTCTAGCTCGGTGTGGGAAACGCAAAGTTCGAATCAACAGGATACACAGGTCACCCGCACCTAGACACCCATNGGCTCGGTCGGTGCTGACCGCGAAGGCGTCGCGCACGACCCGAAAATCGGGCCGAAACCGAAGGGAAGGTTACGGATCGAGCAGCG]
[+] EMBL AL929896 [AGCAGAATCGCCCAGGCTTATACACAAAAGAGCGGCGCAGNCCGCGCGAGTAAACAACACAGTGTTAGAAAGCACTACTTACGCGCGCCCTCGAATCCTCCACACGGTGCTGTGTGTGGTTGGTGAATATTTCAAGCGACGTCATTAGAGAAAGTGCTAGCAGCCGGAAGCAAAGCAACCAGTACAAACTCAAACAAGAACACCAAGTTACCAACGGTTACAATCGTTTCGAACTGATAGTTTCAGTAGGTTCGGGTGTAAGTGTGTGTGTATACGAAGGCAAGTNNTGCGGTCATCGCTTTGCGACCATTTCGAAGGTGACTTANTCGTNGGCGTTACACACTTTGACTTCGCAGTGTAGTGANACGAACCGACCAGTGACATTAGCAAGGACANAAGGCCCCGATACCGTCTAGCTCGGTGTGGGAAACGCAAAGTTCGAATCAACAGGATACACAGGTCACCCGCACCTAGACACCCATNGGCTCGGTCGGTGCTGACCGCGAAGGCGTCGCGCACGACCCGAAAATCGGGCCGAAACCGAAGGGAAGGTTACGGATCGAGCAGCG]
consensusID : consensus_7007#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 517 fasta sequence
[CACGCGTCCGGCCGGAAGCAAAAGCAACCAGTACAAACTCAAACAAGAACACAAGTTACAAACGGTTACAATCGTTTCGAACTGATAGTTTCAGTAGGTTCGGGTGTTGTGTGTGTGTATACGAAGGCAAGTGTGCGGTATCGCTTTGCGACCATTTCGAAGGTGATTATCGTTGGCGTTACACACTTTGACTTCGCAGTGTAGTGAACGAACCGCACCAGTGACATTAGCAAGGACAAAGCCCCGTCCCGTCTAGCTCGGTGTGGGAAACGCAAAGTTCGAATCAAAGGATACACGGTCACCCGCACCTACCCCCATTGGCTCGGTCGGTGCTGACGCGAAGGCTCGCGCACGACCCGAAAATCGGGCCCGAAACCGAAGGGAAGGTTACGGATCGAGCAGCGTGTTTGCCAACAGCCCGCGGAAGCGCACGCTTGGCCTAGCAAATCTGGCAAGCGGCTTAAGCAAAACTCGGGTACAAAAGGCGCTCGATTCAACGGTCCGCCCGACAGTATAG]
[+] EMBL BM596582 [CACGCGTCCGGCCGGAAGCAAAAGCAACCAGTACAAACTCAAACAAGAACACAAGTTACAAACGGTTACAATCGTTTCGAACTGATAGTTTCAGTAGGTTCGGGTGTTGTGTGTGTGTATACGAAGGCAAGTGTGCGGTATCGCTTTGCGACCATTTCGAAGGTGATTATCGTTGGCGTTACACACTTTGACTTCGCAGTGTAGTGAACGAACCGCACCAGTGACATTAGCAAGGACAAAGCCCCGTCCCGTCTAGCTCGGTGTGGGAAACGCAAAGTTCGAATCAAAGGATACACGGTCACCCGCACCTACCCCCATTGGCTCGGTCGGTGCTGACGCGAAGGCTCGCGCACGACCCGAAAATCGGGCCCGAAACCGAAGGGAAGGTTACGGATCGAGCAGCGTGTTTGCCAACAGCCCGCGGAAGCGCACGCTTGGCCTAGCAAATCTGGCAAGCGGCTTAAGCAAAACTCGGGTACAAAAGGCGCTCGATTCAACGGTCCGCCCGACAGTATAG]
consensusID : consensus_7007#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 484 fasta sequence
[GACGCGCCGTACGGCGTCGAGGCAAGAATCCGACGATGATCAGTTGGGTTACACACTTTTGACNTTCCGCGCCAGTGTAGTGAACGAAACGGACCAGGTGACATTATCCAGGGCAAATGCCCCGTTCCGTATAAACTCGGTGTGGGGAAACGCACAAGTTCCGCACATCNCAAGGAGTACACGGTCACCCGCAANCTACCCCATTGGCTCGCGTCGGTGCGTGACGCGAAAGGCTCGCGCACGAACCGAAAATCGGGGCCGAAACCGAAGGGGAAGTGTTACGGATCGAGCAGCGTGTTTGGCAAACAGGCCGCGGGAAAGCGCACGCTTGTGCCTAGCAAATCTGGCAAGCGGGTTAAGCAAAACTCGGGTACAAAACGGCGCTCGATTCAACGGNCCGGCCGAACAGTATAGCGTGTGTAACGTGTTGAGTGCTCTGGGAGCGTAGCCACGGGGGACAACAACAAGGACACTCGCGGCCATT]
[+] EMBL BX469080 [GACGCGCCGTACGGCGTCGAGGCAAGAATCCGACGATGATCAGTTGGGTTACACACTTTTGACNTTCCGCGCCAGTGTAGTGAACGAAACGGACCAGGTGACATTATCCAGGGCAAATGCCCCGTTCCGTATAAACTCGGTGTGGGGAAACGCACAAGTTCCGCACATCNCAAGGAGTACACGGTCACCCGCAANCTACCCCATTGGCTCGCGTCGGTGCGTGACGCGAAAGGCTCGCGCACGAACCGAAAATCGGGGCCGAAACCGAAGGGGAAGTGTTACGGATCGAGCAGCGTGTTTGGCAAACAGGCCGCGGGAAAGCGCACGCTTGTGCCTAGCAAATCTGGCAAGCGGGTTAAGCAAAACTCGGGTACAAAACGGCGCTCGATTCAACGGNCCGGCCGAACAGTATAGCGTGTGTAACGTGTTGAGTGCTCTGGGAGCGTAGCCACGGGGGACAACAACAAGGACACTCGCGGCCATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7007#0 CCGACGAACCGTCGCATCTAGCGGACACACAAAAGAGCGGACGCAGAGCGCGCGAGAAAC 60
consensus_7007#1 ----AGCAGAATCGC-CCAGGCTTATACACAAAAGAGCGG-CGCAGNCCGCGCGAGTAAA 54
consensus_7007#2 ------------------------------------------------------------
consensus_7007#3 ----------------------------------GACGCGCCGTACGGCGT-CGAGGCAA 25
consensus_7007#0 AAACACAGTGTTAGAAAGCACTACTTACGCGCGCCCTCGAATCCTCCACACGGTGCTGTG 120
consensus_7007#1 CAACACAGTGTTAGAAAGCACTACTTACGCGCGCCCTCGAATCCTCCACACGGTGCTGTG 114
consensus_7007#2 ------------------------------------------------------------
consensus_7007#3 GAATCCGACGATGATCAGTTGGGTT---ACACACTTTTGACNTTCCGCGCCAGTGTAGTG 82
consensus_7007#0 TGTGGTTGGTGAATATTTCAAGCGACGTCATT-AGAGAAAG-GCTAGCAGCCGGAAGCAA 178
consensus_7007#1 TGTGGTTGGTGAATATTTCAAGCGACGTCATT-AGAGAAAGTGCTAGCAGCCGGAAGCAA 173
consensus_7007#2 ---------------------------------------CACGCGTCCGGCCGGAAGCAA 21
consensus_7007#3 AACGA------AACGGACCAGGTGACATTATCCAGGGCAAATGCCCCGTTCCGTA--TAA 134
** *** * **
consensus_7007#0 AAGCAACCAGTACAAACTCAAACAAGAACAC-AAGTTACAAACGGT-TACAATCGGTGCG 236
consensus_7007#1 A-GCAACCAGTACAAACTCAAACAAGAACACCAAGTTACCAACGGT-TACAATCGTTTCG 231
consensus_7007#2 AAGCAACCAGTACAAACTCAAACAAGAACAC-AAGTTACAAACGGT-TACAATCGTTTCG 79
consensus_7007#3 ACTCGGTGTGGGGAAACGC--ACAAGTTCCGCACATCNCAAGGAGTACACGGTCACCCGC 192
* * * **** * ***** * * * * * ** ** **
consensus_7007#0 AACTGATAGTTTCAGTAGGTTCGGGTGTT-GTATGTGTGTATACGAA-GGCAAGTGT-GC 293
consensus_7007#1 AACTGATAGTTTCAGTAGGTTCGGGTGTAAGTGTGTGTGTATACGAA-GGCAAGTNNTGC 290
consensus_7007#2 AACTGATAGTTTCAGTAGGTTCGGGTGTT-GTGTGTGTGTATACGAA-GGCAAGTGT-GC 136
consensus_7007#3 AANCTAC----CCCATTGGCTCG--CGTCGGTGCGTG---ACGCGAAAGGCTCGCGCACG 243
** * * * ** *** ** ** *** * **** *** *
consensus_7007#0 TGT-ATCGCGTTGCGACCATTTCGAAGGTGATT--ATCGTTGGCGTTACACACTTTGACT 350
consensus_7007#1 GGTCATCGCTTTGCGACCATTTCGAAGGTGACTTANTCGTNGGCGTTACACACTTTGACT 350
consensus_7007#2 GGT-ATCGCTTTGCGACCATTTCGAAGGTGATT--ATCGTTGGCGTTACACACTTTGACT 193
consensus_7007#3 AACCGAAAATCGGGGCCGAAACCGAAGGGGAA---GTGTTACGGATCGAGCAGCGTGTTT 300
* * * * ****** ** * * * * ** ** *
consensus_7007#0 TCGCAGTGTAGTGAA-CGAACCGCACCAGTGACATTAGCAAGGACAAA--GCCCCG-TCC 406
consensus_7007#1 TCGCAGTGTAGTGANACGAACCG-ACCAGTGACATTAGCAAGGACANAAGGCCCCGATAC 409
consensus_7007#2 TCGCAGTGTAGTGAA-CGAACCGCACCAGTGACATTAGCAAGGACAAA--GCCCCG-TCC 249
consensus_7007#3 GGCAAACAGGCCGCGGGAAAGCGCACGCTTGTGCCTAGCAAATCTGGCAAGC--GGGTTA 358
* * ** ** ** ** ****** ** * *
consensus_7007#0 CGTCTAGCTCGGTGTGGGAAAAGCAAAGTTCGAATCAA-AGGATACAC-GGTCACCCGCA 464
consensus_7007#1 CGTCTAGCTCGGTGTGGGAAACGCAAAGTTCGAATCAACAGGATACACAGGTCACCCGCA 469
consensus_7007#2 CGTCTAGCTCGGTGTGGGAAACGCAAAGTTCGAATCAA-AGGATACAC-GGTCACCCGCA 307
consensus_7007#3 AGCAAAACTCGG-GTACAAAACG--GCGCTCGATTCAA-CGGNCCGGCCGAACAGTATAG 414
* * ***** ** *** * * **** **** ** * * **
consensus_7007#0 CCTA--CCCCCATTAGCTCGGTCGGTGCTGAC-GCGAAGGC-TCGCGCACGACCCGAAAA 520
consensus_7007#1 CCTAGACACCCATNGGCTCGGTCGGTGCTGACCGCGAAGGCGTCGCGCACGACCCGAAAA 529
consensus_7007#2 CCTA--CCCCCATTGGCTCGGTCGGTGCTGAC-GCGAAGGC-TCGCGCACGACCCGAAAA 363
consensus_7007#3 CGTG---TGTAACGTGTTGAGT--GCTCTGGGAGCGTAGCCACGGGGGACAA--CAACAA 467
* * * * * ** * *** *** ** * * * ** * * * **
consensus_7007#0 CCGGGCCCGAAACCGAAGGGAAGGTTACGGATCGAGCAGCGTGTTTGCCAACAGCCCGCG 580
consensus_7007#1 TCGGGCC-GAAACCGAAGGGAAGGTTACGGATCGAGCAGCG------------------- 569
consensus_7007#2 TCGGGCCCGAAACCGAAGGGAAGGTTACGGATCGAGCAGCGTGTTTGCCAACAGCCCGCG 423
consensus_7007#3 GGACACTCGCGGCCATT------------------------------------------- 484
* * **
consensus_7007#0 GAAGCGCACGCTTGGCCTGGCAAATCTGGCAAGCGGCTTAAGCAAAAACTCGGGTACAAA 640
consensus_7007#1 ------------------------------------------------------------
consensus_7007#2 GAAGCGCACGCTTGGCCTAGCAAATCTGGCAAGCGGCTTAAGCAAAACTCGGGTACAAAA 483
consensus_7007#3 ------------------------------------------------------------
consensus_7007#0 AGGCGCTCGATTCAACGGTCCGCCCGACAGTATAGCGTGTGTAACGTGTGAGTGCTCTGG 700
consensus_7007#1 ------------------------------------------------------------
consensus_7007#2 GGCGCTCGATTCAACGGTCCGCCCGACAGTATAG-------------------------- 517
consensus_7007#3 ------------------------------------------------------------
consensus_7007#0 GAGCGTAGCCACGGGAAAAAAAGGACACTCGCGCCATTGGAAGGATCGTTGTGGTACCGG 760
consensus_7007#1 ------------------------------------------------------------
consensus_7007#2 ------------------------------------------------------------
consensus_7007#3 ------------------------------------------------------------
consensus_7007#0 TCAGGACACACAGAAACATTTTGGGTTGCGTGCA 794
consensus_7007#1 ----------------------------------
consensus_7007#2 ----------------------------------
consensus_7007#3 ----------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||