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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7012#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1259 fasta sequence
[AGCATACGTGCATTGAAACTGCCGCCAACTTTGTTCTAAGAGCTAGAGCGATCTTAGTAAGCCGTTTAGTAGTAACGTACGTAAGCTACCGAACACGTTAGAGTGATCTTTCGTCTCTCAAGCGGTAAACGCTCATCATCGTTTGCATGATAATGATAAAAAAGCCCACACACACACACACAGATCGATCGCGGAGGTGGACTGGGTGGGCTTCAAACCCATCCCATTCCTGTATGACACTTCATAGGCTACTTGCTTATCTGTTCAATGTAAATAGTTAGTGCGTTAGTGTCTGTTTATTATATTCGTTTTAGTACTTGCATCATACGGTAGCGTTAGCTCGTTTCGATAACATCTTCTGTTGTTCTAATAATGTGTATGTATGTAGGTGTTTCTCTTAACCCTTTTTTCCCCGGAGAGACGTCATTACAACGAAATAATGAACAAAAGAAGACGAAAAA-AAACAATACAATACTAAGCGAAAGAGTTAAGAAGAAGAAACGGTACCTTCGAACAGGGAATTTTTTTTAGCGAGCTAAGCAAACAGGCAAAACATCGTTGAGCGAATGAGTTTTGTGGCGGAAGGAAAACAAACGCC-TTTTGGGGTGATTACAAAAAAGGGAAGGATCTGTAAACGATATGGAATGAAAACACAAAAAGCAAACCACCCGTAGTAGGTAACAGAAAAGAGGGC-AATCGAGCAAATCGAGAAGATAGGAAGCATATGTAGAAAGCCAAGAAGAGAGATTGGCACCGTGTTGGGTGTGTGTTGCCACCATAATGTAGAGTTTTAATTTATTGGATTTAAGTTATGGGATAGTGATTCTTTTCTCTTCTCCACTGCGTTTGTATATGTGTTAGAA-TTTTTGTTTGTTTTTTCTTTCTTCTTCTTATTCTTGCAACGATAACGATATATGCGTATCGTGCAGGAATCGAATGCTGAAACAGTGAGCGTGCGCCGTATCGTTGATTCGATCGGCCGCCGTGGAAGTTTTCGGCGACGAGCAAAAAAGGGTGTTTACACACCAGAGAAGTGCTAGGTATTAGGAATTTTTGATAATTGATAACAATCGAAGCGAGTACNATACACCTCCGTCCACACGTAACGAANGTACGCAATTTTTTCGCGCGAATAGTGTGTATGTGTAGGGTAGTAAGGAGGAAGGTGAACTCGTTCGAACGTTTATAGTAGTGGAAGAACGAAAGATAGGCAAAGGCGAATGAGTGTATTTCGTTTATGTATTTTGTAAAGTGAGTAT]
[+] EMBL BX604749 [AGCATACGTGCATTGAAACTGCCGCCAACTTTGTTCTAAGAGCTAGAGCGATCTTAGTAAGCCGTTTAGTAGTAACGTACGTAAGCTACCGAACACGTTAGAGTGATCTTTCGTCTCTCAAGCGGTAAACGCTCATCATCGTTTGCATGATAATGATAAAAAAGCCCACACACACACACACAGATCGATCGCGGAGGTGGACTGGGTGGGCTTCAAACCCATCCCATTCCTGTATGACACTTCATAGGCTACTTGCTTATCTGTTCAATGTAAATAGTTAGTGCGTTAGTGTCTGTTTATTATATTCGTTTTAGTACTTGCATCATACGGTAGCGTTAGCTCGTTTCGATAACATCTTCTGTTGTTCTAATAATGTGTATGTATGTAGGTGTTTCTCTTAACCCTTTTTTCCCCGGAGAGACGTCATTACAACGAAATAATGAACAAAAGAAGACGAAAAACAAACAATACAATACTAAGCGA AAGAAGAAGAAACGGTACCTTCGAACAGGGGATTTTTTTTAGCGAGCTAAGCAAACAGGCAAAACATCGTTGAGCGAATGAGTTTTGTGGCGGAAGGAAAACAAACGCC TTT ]
[+] EMBL BX623293 [ CCATCCCATTCCTGTATGACACTTCATAGGCTGCTTGCTTATCTGTTCAATGTAAATAGTTAGTGCGTTAGTGTCTGTTTATTATATTCGTTTTAGTACTTGCATCATACGGTAGCGTTAGCTCGTTTCGATAACATCTTCTGTTGTTCTAATAATGTGTATGTATGTAGGTGTTTCTCTTAACCCTTTTTTCCCCGGAGAGACGTGATTACAACGAAATAATGAACAAAAGAAGACGAAAAA AAACAATACAATACTAAGCGAAAGAGTTAAGAAGAAGAAACGGTACCTTCGAACAGGGAATTTTTTTTAGCGAGCTAAGCAAACAGGCAAAACATCGTTGAGCGAATGAGTTTTGTGGCGGAAGGAAAACAAACGCC TTTTGGGGTGATTACAAAAAAGGGAAGGATCTGTAAACGATATGGAATGAAAACACAAAAAGCAAACCACCCGTAGTAGGTAACAGAAAAGAGGGC AATCGAGCAAATCGAGAAGATAGGAAGCATATGTAGAAAGCCAAGAAGAGAGATTGGCACCGTGTTGGGTGTGTGTTGCCACCATAATGTAGAGTTTTAATTTATTGGATTTAAGTTATGGGATAGTGAT ]
[+] EMBL BX623633 [ AGAAGACGAAAAA AAACAATACAATACTAAGCGAAAGAGTTAAGAAGAAGAAACGGTACCTTCGAACAGGGAATTTTTTTTAGCGAGCTAAGCAAACAGGCAAAACATCGTTGAGCGAATGAGTTTTGTGGCGGAAGGAAAACAAACGCC TTTTGGGGTGATTACAAAAAAGGGAAGGATCTGTAAACGATATGGAATGAAAACACAAAAAGCAAACCACCCGTAGTAGGTAACAGAAAAGAGGGC AATCGAGCAAATCGAGAAGATAGGAAGCATATGTAGAAAGCCAAGAAGAGAGATTGGCACCGTGTTGGGTGTGTGTTGCCACCATAATGTAGAGTTTTAATTTATTGGATTTAAGTTATGGGATAGTGATTCTTTTCTCTTCTCCACTGCGTTTGTATATGTGTTAGAA TTTTTGTTTGTTTTTTCTTTCTTCTTCTTATTCTTGCAACGATAACGATATATGCGTATCGTGCAGGAATCGAATGCTGAAACAGTGAGCGTGCGCCGTATCGTTGATTCGATCGGCCGCCGTGGAAGTTTTCGGCGACGAGCAAAAAAGGGTGTTTACACACCAGAGAAGTGCTAGGTATTAGGAATTTTTGATAATTGATAACAATCGAAGCGAGTACNATACACCTCCGTCCACACGTAACGAANGTACGCAATTTTTTCGCGCGAATAGTG ]
[+] EMBL BX612291 [ AATGAGTTTTGTGGCGGAAGGAAAACAAACGCCTTTTTGGGGTGATTACAAAAAAGGGAAGGATCGGTAAACGATATGGAATGAAAACACAGAAAGCAAACCACCCGTAGTAGGTAAAAGAAAA AGGGCAAATCGAGCAAATCGAGAAGATAGGAAGCATATGTAGAAAGCCAAGAAGAGAGATTGGCACCGTGTTGGGTGTGTGTTGCCACCATAATGTAGAGTTTTAATTTATTGGATTTAAGTTATGGGATAGTGATTCTTTTCTCTTCTCCACTGCGTTTGTATATGTGTTAGAATTTTTTGTTTGTTTTT TTTCTTATTCTTATTCTTGCAGCAATAACGATCTATGCGTATCGTGCAGGAATCGAATGCTGAAACAGTGAGCGTGCGCCGTATCGTTGATTCGATCGGCCGCCGTGGAAGTTTTCGGCGACGAGCAAAAAAGGGTGTTTACACACCAGAGAAGTGCTAGGTATTAGGAA TTTTGATAATTGATAACAATCGAAGCGAGTACAATACACCTCCGTCCACACGTAACGAAGGTACGCAA TTTTTCGCGCGAATAGTGTGTATGTGTAGGGTAGTAAGGAGGAAGGTGAACTCGTTCGAACGTTTATAGTAGTGGAAGAACGAAAGATAGGCAAAGGCGAATGAGTGTATTTCGTTTATGTATTTTGTAAAGTGAGTAT]
consensusID : consensus_7012#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 753 fasta sequence
[AGAATCGCACGAGGTGTACTAAGAGCTAGAGCGATCTTACTAAGCCGTTTAATAGTAACGTACGTAAGCTACCGAACACGTTAGAGTGATCTTTCGTGTCGCAAGCGGTAAACGCTCATCATCGTTTGCATGATAATGATAAAAAAGCCCACAAACACACAGATCGATCGCGGAGGTGGACTGGGTGGGCTTCAAACCCATCCCATTCCTGTATGACACTTCATAGGCTGCTTGCTTATCTGTTCAATGTAAATAGTTAGTGCGTTAGTGTCTGTTTATTATATTCGTTTTAGTACTTGCATCATACGGTAGCGTTAGCTCGTTTCGATAACATCTTCTGTTGTTCTAATAATGTGTATGTATGTAGGTGTTTCTCTTAACCCTTTTTTCCCCGGAGGGACGTGATTACAACGAAATAATGAACAAAAGAAGACGAAAAAAAACAATACAATACTAAGCGAAAGAGTTAAGAACGAAGAAACGGTACCTTCGAACAGGGAATNTTTTTTAGCGAGCTAAGCAAACAGGCAGAAACATCGTTGAGCGAATGAGGTTTGTGGCGGANAGGAAAACAAACCGCCCTTTAGGGGTGATTACCAACACANACGGGAAGGATCTGGTAAACGAATCTGGAATGAAACACACCAAAAAGGCAAAACAACCCCGGNAATTAGGTAACAGAACACAAGACGGGCCAATCGAGCACAATCCGAGAAGAATCGGAAGNCATATTTAGAAAAGNGCCAGAACNAC]
[+] EMBL BX469683 [AGAATCGCACGAGGTGTACTAAGAGCTAGAGCGATCTTACTAAGCCGTTTAATAGTAACGTACGTAAGCTACCGAACACGTTAGAGTGATCTTTCGTGTCGCAAGCGGTAAACGCTCATCATCGTTTGCATGATAATGATAAAAAAGCCCACAAACACACAGATCGATCGCGGAGGTGGACTGGGTGGGCTTCAAACCCATCCCATTCCTGTATGACACTTCATAGGCTGCTTGCTTATCTGTTCAATGTAAATAGTTAGTGCGTTAGTGTCTGTTTATTATATTCGTTTTAGTACTTGCATCATACGGTAGCGTTAGCTCGTTTCGATAACATCTTCTGTTGTTCTAATAATGTGTATGTATGTAGGTGTTTCTCTTAACCCTTTTTTCCCCGGAGGGACGTGATTACAACGAAATAATGAACAAAAGAAGACGAAAAAAAACAATACAATACTAAGCGAAAGAGTTAAGAACGAAGAAACGGTACCTTCGAACAGGGAATNTTTTTTAGCGAGCTAAGCAAACAGGCAGAAACATCGTTGAGCGAATGAGGTTTGTGGCGGANAGGAAAACAAACCGCCCTTTAGGGGTGATTACCAACACANACGGGAAGGATCTGGTAAACGAATCTGGAATGAAACACACCAAAAAGGCAAAACAACCCCGGNAATTAGGTAACAGAACACAAGACGGGCCAATCGAGCACAATCCGAGAAGAATCGGAAGNCATATTTAGAAAAGNGCCAGAACNAC]
consensusID : consensus_7012#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 492 fasta sequence
[GATCCCCCGAGGTTTAAAACAACGCCTTTTGGGGTGATTACAAAAAAGGGAAGGATCTGTAAACGATATGGAATGAAAACACAAAAAGCAAACCACCCGTAGTAGGTAACAGAAAAGAGGGCAATCGAGCAAATCGAGAAGATAGGAAGCATATGTAGAAAGCCAAGAAGAGAGATTGGCACCGTGTTGGGTGTGTGTTGCCACCATAATGTAGAGTTTTAATTTATTGGATTTAAGTTATGGGATAGTGATTCTTTTCTCTTCTCCACTGCGTTTGTATATGTGTTAGAATTTTAGTGGTTTTNTCTTTCTTCTTCTTATTCTTGCAACGATAACGATATATGCGTATCGTGCAGGAATCGAATGCTGAAACAGTGAGCGTGCGCCGTATCGTATGATTCGATCGGCGCGCTGGAAGTTTTCGCGCGNACGAGCACACAACACACNGGTGGTACTACACACCAGAGCCCAGTGCTAGGCTACTTAGGAAAT]
[+] EMBL AL929950 [GATCCCCCGAGGTTTAAAACAACGCCTTTTGGGGTGATTACAAAAAAGGGAAGGATCTGTAAACGATATGGAATGAAAACACAAAAAGCAAACCACCCGTAGTAGGTAACAGAAAAGAGGGCAATCGAGCAAATCGAGAAGATAGGAAGCATATGTAGAAAGCCAAGAAGAGAGATTGGCACCGTGTTGGGTGTGTGTTGCCACCATAATGTAGAGTTTTAATTTATTGGATTTAAGTTATGGGATAGTGATTCTTTTCTCTTCTCCACTGCGTTTGTATATGTGTTAGAATTTTAGTGGTTTTNTCTTTCTTCTTCTTATTCTTGCAACGATAACGATATATGCGTATCGTGCAGGAATCGAATGCTGAAACAGTGAGCGTGCGCCGTATCGTATGATTCGATCGGCGCGCTGGAAGTTTTCGCGCGNACGAGCACACAACACACNGGTGGTACTACACACCAGAGCCCAGTGCTAGGCTACTTAGGAAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7012#0 AGCATACGTGCATTGAAACTGCCGCCAACTTTGTTCTAAGAGCTAGAGCGATCTTAGTAA 60
consensus_7012#2 ------------------------------------------------------------
consensus_7012#1 ------------------------------------------------------------
consensus_7012#0 GCCGTTTAGTAGTAACGTACGTAAGCTACCGAACACGTTAGAGTGATCTTTCGTCTCTCA 120
consensus_7012#2 ------------------------------------------------------------
consensus_7012#1 ------------------------------------------------------------
consensus_7012#0 AGCGGTAAACGCTCATCATCGTTTGCATGATAATGATAAAAAAGCCCACACACACACACA 180
consensus_7012#2 ------------------------------------------------------------
consensus_7012#1 ------------------------------------------------------------
consensus_7012#0 CAGATCGATCGCGGAGGTGGACTGGGTGGGCTTCAAACCCATCCCATTCCTGTATGACAC 240
consensus_7012#2 ------------------------------------------------------------
consensus_7012#1 ------------------------------------------------------------
consensus_7012#0 TTCATAGGCTACTTGCTTATCTGTTCAATGTAAATAGTTAGTGCGTTAGTGTCTGTTTAT 300
consensus_7012#2 ------------------------------------------------------------
consensus_7012#1 ------------------------------------------------------------
consensus_7012#0 TATATTCGTTTTAGTACTTGCATCATACGGTAGCGTTAGCTCGTTTCGATAACATCTTCT 360
consensus_7012#2 ------------------------------------------------------------
consensus_7012#1 ------------------------------------------------------------
consensus_7012#0 GTTGTTCTAATAATGTGTATGTATGTAGGTGTTTCTCTTAACCCTTTTTTCCCCGGAGAG 420
consensus_7012#2 ------------------------------------------------------------
consensus_7012#1 ------------------------------------------------------------
consensus_7012#0 ACGTCATTACAACGAAATAATGAACAAAAGAAGACGAAAAAAAACAATACAATACTAAGC 480
consensus_7012#2 ------------------------------------------------------------
consensus_7012#1 ------------------------------------------------------------
consensus_7012#0 GAAAGAGTTAAGAAGAAGAAACGGTACCTTCGAACAGGGAATTTTTTTTAGCGAGCTAAG 540
consensus_7012#2 ------------------------------------------------------------
consensus_7012#1 ------------------------------------------------------------
consensus_7012#0 CAAACAGGCAAAACATCGTTGAGCGAATGAGTTTTGTGGCGGAAGGAAAACAAACGCCTT 600
consensus_7012#2 --------------------------------GATCCCCCGAGGTTTAAAACAACGCCTT 28
consensus_7012#1 --------------------AGAATCGCACGAGGTGTACTAAGAGCTAGAGCGAT-CTTA 39
* * * * * *
consensus_7012#0 TTGGGGTGATTACAAAAAAGGGAAG-GATCTGT-AAACGATATGGAATGAAAACACAAAA 658
consensus_7012#2 TTGGGGTGATTACAAAAAAGGGAAG-GATCTGT-AAACGATATGGAATGAAAACACAAAA 86
consensus_7012#1 CTAAGCCGTTTAATAGTAACGTACGTAAGCTACCGAACACGTTAGAGTGATCTTTCGTGT 99
* * * *** * ** * * * * ** *** * ** *** *
consensus_7012#0 AGCAAACCACCCGTAGTAGGTAACAG--AAAAGAGGGCAATCGAGCAAATCGAGAAGATA 716
consensus_7012#2 AGCAAACCACCCGTAGTAGGTAACAG--AAAAGAGGGCAATCGAGCAAATCGAGAAGATA 144
consensus_7012#1 CGCAAGCGGTAAACGCTCATCATCGTTTGCATGATAATGATAAAAAAGCCCACAAACACA 159
**** * * * * * ** ** * * * ** * *
consensus_7012#0 GGAAGCATATGTAGAAAGCCAAGAAGAGAGATTGGCACCGTGTTGGGTGTGTGT-TGCCA 775
consensus_7012#2 GGAAGCATATGTAGAAAGCCAAGAAGAGAGATTGGCACCGTGTTGGGTGTGTGT-TGCCA 203
consensus_7012#1 CAGATCGATCGCGGAGGTGGACTGGGTGGGCTTCAAACC-CATCCCATTCCTGTATGACA 218
* * * ** * * * * ** *** * * *** ** **
consensus_7012#0 CCATA-ATGTAGAGTTTTAATTTATTGGATTTAA---GTTA-TGGGATAGTGATTCTTTT 830
consensus_7012#2 CCATA-ATGTAGAGTTTTAATTTATTGGATTTAA---GTTA-TGGGATAGTGATTCTTTT 258
consensus_7012#1 CTTCATAGGCTGCTTGCTTATCTGTTCAATGTAAATAGTTAGTGCGTTAGTGTCTGTTTA 278
* * * * * * * ** * ** ** *** **** ** * ***** * ***
consensus_7012#0 CTCTTCTCCACTGCGTTTGTATAT-GTGTTAGAATTTTTGTTTGTTTTT-TCTTTCTTCT 888
consensus_7012#2 CTCTTCTCCACTGCGTTTGTATAT-GTGTTAGAATTTTAGTG-GTTTTN-TCTTTCTTCT 315
consensus_7012#1 TTATATTCGTTTTAGTACTTGCATCATACGGTAGCGTTAGCTCGTTTCGATAACATCTTC 338
* * ** * ** * ** * * ** * **** * *
consensus_7012#0 TCTTATTCTTGCAACGATAACG-ATATATGCGTATCGTGCAGGAATCGAATGCT-GAAAC 946
consensus_7012#2 TCTTATTCTTGCAACGATAACG-ATATATGCGTATCGTGCAGGAATCGAATGCT-GAAAC 373
consensus_7012#1 TGTTGTTCTAATAATGTGTATGTATGTAGGTGTTTCTCTTAACCCTTTTTTCCCCGGAGG 398
* ** **** ** * * * ** ** * ** ** * * * * * *
consensus_7012#0 AGTGAGCGTGCGCCGTATCGT-TGATTCGATCGGCCGCCGTGGAA------GTTTTCG-G 998
consensus_7012#2 AGTGAGCGTGCGCCGTATCGTATGATTCGATCGGC-GCGCTGGAA------GTTTTCGCG 426
consensus_7012#1 GACGTGATTACAACGAAATAATGAACAAAAGAAGACGAAAAAAAACAATACAATACTAAG 458
* * * * ** * * * * * ** * *
consensus_7012#0 CGA-CGAGCAAAAAAGGG--TGTTTACACACCAGAGAAGTGCTAGGTATTAGGAATTTTT 1055
consensus_7012#2 CGNACGAGCACACAACACACNGGTGGTACTACACACCAGAGCCCAGTGCTAGGCTACTTA 486
consensus_7012#1 CGAAAGAGTTAAGAACGAAGAAACGGTACCTTCGAACAGGGAATNTTTTTTAGCGAGCTA 518
** *** * ** ** * ** * * * * *
consensus_7012#0 GATAATTGATAACAATCGAAGCGAGTACNATACACCTCCGTCCACACGTAACGAANGTAC 1115
consensus_7012#2 GGAAAT------------------------------------------------------ 492
consensus_7012#1 AGCAAACAGGCAGAAACATCGTTGAGCGAATGAGGTTTGTGGCGGANAGGAAAACAAACC 578
**
consensus_7012#0 GCAATTTTTTCGCGCGAATAGTGTGTATGTGTAGGGTAGTAAGGAGGAAGGTGAACTCGT 1175
consensus_7012#2 ------------------------------------------------------------
consensus_7012#1 GCCCTTTAGGGGTGATTACCAACACANACGGGAAGGATCTGGTAAACGAATCTGGAATGA 638
consensus_7012#0 TCGAACGTTTATAGTAGTGGAAGAACGAAAGATAGGCAAAGGCGAATGAGTGTATTTCGT 1235
consensus_7012#2 ------------------------------------------------------------
consensus_7012#1 AACACACCAAAAAGGCAAAACAACCCCGGNAATTAGGTAACAGAACACAAGACGGGCCAA 698
consensus_7012#0 TTATGTATTTTGTAAAGTGAGTAT------------------------------- 1259
consensus_7012#2 -------------------------------------------------------
consensus_7012#1 TCGAGCACAATCCGAGAAGAATCGGAAGNCATATTTAGAAAAGNGCCAGAACNAC 753
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||