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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7016#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1030 fasta sequence
[GGTGCTGGCGGAGCTGGCCCGCTTTCACGCGGTCAGCCTCGCGTACCAGCGGCGCCATCCGGCCGAGTTCCGGCAGCTGACCGGCGCGCTCGAGGAGGGCATCTTTTCGCAGGCGAACGAGGAATGGTACCGCCGGTACTACGACGTGCTGACGCGCAACGCCATCCAGATGGTGCGGCAAACGGTGCCGGAAAAGCGGGACCATCTGGCCAAGCTGGAGGCGTTCCTGGGCAACTGTTTCGGCCACCTGGTGGAGCTGGTAAACCGGACCAGCGAGCTGTCGGTCATCTGCCACGGCGACTGCTGGACGAACAACATACTCTTCCGGTACGATGATGCCGGCGCAATCGCTGAGACGTTTTTGGTGGACTTTCAGCTCATCCGGCACGGTTCGCTAGCGCTCGATCTCGCCTACCTGATCTACTGCTGCACCGATGGGGCGCTGCGCAAGAAGAGCCTGCAGCACTGGCTGCAGACGTACCACCAGCAACTGGTACGCTCGCTGCGGTTGCTGCTGGGCGACGGTGGGTTCGCCGAAGCGTTCGGCTCCGACCAGCGGCTGTGGGAGCAGATCGGCGACGAGTTCAGGGTGTGCGCCCGGTTCGGGCTCGGCGCGGCCATGGACATGCTGCCGATCAGCACCTGCTCGTCGGAGGAGGCGCCCGATCTGTACGCGAGCGGGACGGAGACGGCCGCCACGCCGCCCGAGCTGAACGTGCCGCCGAACGAGCTGTGCCGGCAGAAGATGACCATGCTGGTGCTGGAGCTGATCGATGGCGGCATGCTGTGAGGCGCAGAAACGAAAGAACGCTGACGGCGGTGGCGGTTTAAAGGCTCTCTAGGAGGAAGGCGTGCCGGTCGTTACTAGCGATACCTGAGCGTTGGGACCTGCGAGGGGCGGGTCCGGGGAATGTTGGCAGTATTTTAGGGGCCCCGCAGGGCTGTAGCAAATGTACTATTCGTTAGTCAACTGTGCCGATTATGCACTATGCTCGTGCTCGTTTATGCTACCCAATGACAATAAATATAT]
[+] EMBL BX609085 [GGTGCTGGCGGAGCTGGCCCGCTTTCACGCGGTCAGCCTCGCGTACCAGCGGCGCCATCCGGCCGAGTTCCGGCAGCTGACCGGCGCGCTCGAGGAGGGCATCTTTTCGCAGGCGAACGAGGAATGGTACCGCCGGTACTACGACGTGCTGACGCGCAACGCCATCCAGATGGTGCGGCAAACGGTGCCGGAAAAGCGGGACCATCTGGCCAAGCTGGAGGCGTTCCTGGGCAACTGTTTCGGCCACCTGGTGGAGCTGGTAAACCGGACCAGCGAGCTGTCGGTCATCTGCCACGGCGACTGCTGGACGAACAACATACTCTTCCGGTACGATGATGCCGGCGCAATCGCTGAGACGTTTTTGGTGGACTTTCAGCTCATCCGGCACGGTTCGCTAGCGCTCGATCTCGCCTACCTGATCTACTGCTGCACCGATGGGGCGCTGCGCAAGAAGAGCCTGCAGCACTGGCTGCAGACGTACCACCAGCAACTGGTACGTTCGCTGCGGTTGCTGCTGGGCGACGGTGGGTTCGCCGAAGCGTTCGGCTCCGACCAGCGGCTGTGGGAGC ]
[+] EMBL BX610394 [GGTGCTGGCGGAGCTGGCCCGCTTTCACGCGGTCAGCCTCGCGTACCAGCGGCGCCATCCGGCCGAGTTCCGGCAGCTGACCGGCGCGCTCGAGGAGGGCATCTTTTCGCAGGCGAACGAGGAATGGTACCGCCGGTACTACGACGTGCTGACGCGCAACGCCATCCAGATGGTGCGGCAAACGGTGCCGGAAAAGCGGGACCATCTGGCCAAGCTGGAGGCGTTCCTGGGCAACTGTTTCGGCCACCTGGTGGAGCTGGTAAACCGGACCAGCGAGCTGTCGGTCATCTGCCACGGCGACTGCTGGACGAACAACATACTCTTCCGGTACGATGATGCCGGCGCAATCGCTGAGACGTTTTTGGTGGACTTTCAGCTCATCCGGCACGGTTCGCTAGCGCTCGATCTCGCCTACCTGATCTACTGCTGCACCGATGGGGCGCTGCGCAAGAAGAGCCTGCAGCACTGGCTGCAGACGTACCACCAGCAACTGGTA ]
[+] EMBL BX617202 [ GATGGTGCGGCAAACGGTGCCGGAAAAGCGGGACCATCTGGCCAAGCTGGAGGCGTTCCTGGGCAACTGTTTCGGCCACCTGGTGGAGCTGGTAAACCGGACCAGCGAGCTGTCGGTCATCTGCCACGGCGACTGCTGGACGAACAACATACTCTTCCGGTACGATGATGCCGGCGCAATCGCTGAGACGTGTTTGGTGGACTTTCAGCTCATCCGGCACGGTTCGCTAGCGCTCGATCTCGCCTACCTGATCTACTGCTGCACCGATGGGGCGCTGCGCAAGAAGAGCCTGCAGCACTGGCTGCAGACGTACCACCAGCAACTGGTACGCTCGCTGCGGTTGCTGCTGGGCGACGGTGGGTTCGCCGAAGCGTTCGGCTCCGACCAGCGGCTGTGGGAGCAGATCGGCGACGAGTTCAGGGTGTGCGCCCGGTTCGG ]
[+] EMBL BX618419 [ ACCTGGTGGAGCTGGTAAACCGGACCTGCGAGCTGTCGGTCATCTGCCACGGCGACTGCTGGACGAACAACATACTCTTCCGGTACGATGATGCCGGCGCAATCGCTGAGACGTGTTTGGTGGACTTTCAGCTCATCCGGCACGGTTCGCTAGCGCTCGATCTCGCCTACCTGATCTACTGCTGCACCGATGGGGCGCTGCGCAAGAAGAGCCTGCAGCACTGGCTGCAGACGTACCACCAGCAACTGGTACGCTCGCTGCGGTTGCTGCTGGGCGACGGTGGGTTCGCCGAAGCGTTCGGCTCCGACCAGCGGCTGTGGGAGCAGATCGGCGACGAGTTCAGGGTGTGCGCCCGGTTCGGGCTCGGCGCGGCCATGGACATGCTGCCGATCAGCACCTGCTCGTCGGAGGAGGCGCCCGATCTGTACGCGAGCGGGACGGAGACGGCCGCCACGCCGCCCGAGCTGAACGTGCCGCCGAACGAGCTGTGCCGGCAGAAGATGACCATGCTGGTGCTGGAGCTGATCGATGGCGGCATGCTGTGAGGCGCAGAAACGAAAGAACGCTGACGGCGGTGGCGGTTTAAAGGCTCTCTAGGAGGAAGGCGTGCCGGTCGTTACTAGCGATACCTGAGCGTTGGGACCTGCGAGGGGCGGGTCCGGGGAATGTTGGCAGTATTTTAGGGGCCCCGCAGGGCTGTAGCAAATGTACTATTCGTTAGTCAACTGTGCCGATTATGCACTATGCTCGTGCTCGTTTATGCTACCCAATGACAATAAATATAT]
[+] EMBL BX618197 [ CGTCGGAGGAGGCGCCCGATCTGTACGCGAGCGGGACGGAGACGGCCGCCACGCCGCCCGAGCTGAACGTGCCGCCGAACGAGCTGTGCCGGCAGAAGAAGACCATGCTG ]
consensusID : consensus_7016#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 590 fasta sequence
[ACCANCGGCGCCATCCGGCCGAGTTCCGGCAGCTGACCGGCGCGCTCGAGGAGGGCATCTTTTCGCAGGCGAACGAGGAATGGTACCGCCGGTACTACGACGTGCTGACGCGCAACGCCATCCAGATGGTGCGGCAAACGGTGCCGGAAAAGCGGGACCATCTGGCCAAGCTGGAGCGGTTCCTGGGCAACTGTTTCGGCCACCTGGTGGAGCTGGTAAACCGGACCAGCGAGCTGTCGGTCATCTGCCACGGCGACTGCTGGACGAACAACATACTCTTCCGGTACGATGAGGCCGGCGCAATCGCTGAGACGTGTTTGGTGGACTTTCAGCTCATCCGGCATGCTGTGAGGTGCAGAAGCGAAGGAACGCTGACGGTGGCGGTTTAAAGGCTCTCTAGCAGGAAGGCATGCCGGTCGTTACTAGCGATACCTGAGCGTTGGGACCTGCGAGGGGAGGGTCCGGGGAATGTTGGCAGTATTTTAGGGGCCCCGCANGGCTGTAGCAAATGTACTATTCGTTAGTCAACTGTGCCGATTATGCACTATGCTCGTGCTCGTTTATGCTACCCAATGACAATAAATATATGA]
[+] EMBL BX627008 [ACCANCGGCGCCATCCGGCCGAGTTCCGGCAGCTGACCGGCGCGCTCGAGGAGGGCATCTTTTCGCAGGCGAACGAGGAATGGTACCGCCGGTACTACGACGTGCTGACGCGCAACGCCATCCAGATGGTGCGGCAAACGGTGCCGGAAAAGCGGGACCATCTGGCCAAGCTGGAGCGGTTCCTGGGCAACTGTTTCGGCCACCTGGTGGAGCTGGTAAACCGGACCAGCGAGCTGTCGGTCATCTGCCACGGCGACTGCTGGACGAACAACATACTCTTCCGGTACGATGAGGCCGGCGCAATCGCTGAGACGTGTTTGGTGGACTTTCAGCTCATCCGGCATGCTGTGAGGTGCAGAAGCGAAGGAACGCTGACGGTGGCGGTTTAAAGGCTCTCTAGCAGGAAGGCATGCCGGTCGTTACTAGCGATACCTGAGCGTTGGGACCTGCGAGGGGAGGGTCCGGGGAATGTTGGCAGTATTTTAGGGGCCCCGCANGGCTGTAGCAAATGTACTATTCGTTAGTCAACTGTGCCGATTATGCACTATGCTCGTGCTCGTTTATGCTACCCAATGACAATAAATATATGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7016#0 GGTGCTGGCGGAGCTGGCCCGCTTTCACGCGGTCAGCCTCGCGTACCAGCGGCGCCATCC 60
consensus_7016#1 --------------------------------------------ACCANCGGCGCCATCC 16
**** ***********
consensus_7016#0 GGCCGAGTTCCGGCAGCTGACCGGCGCGCTCGAGGAGGGCATCTTTTCGCAGGCGAACGA 120
consensus_7016#1 GGCCGAGTTCCGGCAGCTGACCGGCGCGCTCGAGGAGGGCATCTTTTCGCAGGCGAACGA 76
************************************************************
consensus_7016#0 GGAATGGTACCGCCGGTACTACGACGTGCTGACGCGCAACGCCATCCAGATGGTGCGGCA 180
consensus_7016#1 GGAATGGTACCGCCGGTACTACGACGTGCTGACGCGCAACGCCATCCAGATGGTGCGGCA 136
************************************************************
consensus_7016#0 AACGGTGCCGGAAAAGCGGGACCATCTGGCCAAGCTGGAGGCGTTCCTGGGCAACTGTTT 240
consensus_7016#1 AACGGTGCCGGAAAAGCGGGACCATCTGGCCAAGCTGGAGCGGTTCCTGGGCAACTGTTT 196
**************************************** ******************
consensus_7016#0 CGGCCACCTGGTGGAGCTGGTAAACCGGACCAGCGAGCTGTCGGTCATCTGCCACGGCGA 300
consensus_7016#1 CGGCCACCTGGTGGAGCTGGTAAACCGGACCAGCGAGCTGTCGGTCATCTGCCACGGCGA 256
************************************************************
consensus_7016#0 CTGCTGGACGAACAACATACTCTTCCGGTACGATGATGCCGGCGCAATCGCTGAGACGTT 360
consensus_7016#1 CTGCTGGACGAACAACATACTCTTCCGGTACGATGAGGCCGGCGCAATCGCTGAGACGTG 316
************************************ **********************
consensus_7016#0 TTTGGTGGACTTTCAGCTCATCCGGCACGGTTCGCTAGCGCTCGATCTCGCCTACCTGAT 420
consensus_7016#1 TTTGGTGGACTTTCAGCTCATCCGGCATGCTGTGA-GGTGCAGAAGCGAAGGAAC---GC 372
*************************** * * * * ** * * **
consensus_7016#0 CTACTGCTGCACCGATGGGGCGCTGCGCAAGAAGAGCCTGCAGCACTGGCTGCAGACGTA 480
consensus_7016#1 TGACGGTGGCGGTTTAAAGGCTCTCTAGCAGGAAGGCATGC--CGGTCGTTACTAGCGAT 430
** * ** *** ** ** * ** *** * * * * * **
consensus_7016#0 CCACCAGCAACTGGTACGCTCGCTGCGGTTGCTGCTGGGCGACGGTGGGTTCGCCGAAGC 540
consensus_7016#1 ACCTGAGCG-TTGGGAC-----CTGCGAGGG--GAGGGTCCGGGGAATGTTGGCAGTATT 482
* *** *** ** ***** * * ** * ** *** ** * *
consensus_7016#0 GTTCGGCTCCGACCAGCGGCTGTGGGAGCAGATCGGCGACGAGTTCAGGGTGTGCGCCCG 600
consensus_7016#1 TTAGGGGCCCCGC--ANGGCTGT---AGCAAATGTACTATTCGTTAGTCAACTGTGCCGA 537
* ** ** * ****** **** ** * * *** ** ***
consensus_7016#0 GTTCGGGCTCGGCGCGGCCATGGACATGCTGCCGATCAGCACCTGCTCGTCGGAGGAGGC 660
consensus_7016#1 TTATGCACTATGCTCGTGCTCGTTTATGCTACCCAATGACAATAAATATATGA------- 590
* * ** ** ** * * ***** ** * ** * *
consensus_7016#0 GCCCGATCTGTACGCGAGCGGGACGGAGACGGCCGCCACGCCGCCCGAGCTGAACGTGCC 720
consensus_7016#1 ------------------------------------------------------------
consensus_7016#0 GCCGAACGAGCTGTGCCGGCAGAAGATGACCATGCTGGTGCTGGAGCTGATCGATGGCGG 780
consensus_7016#1 ------------------------------------------------------------
consensus_7016#0 CATGCTGTGAGGCGCAGAAACGAAAGAACGCTGACGGCGGTGGCGGTTTAAAGGCTCTCT 840
consensus_7016#1 ------------------------------------------------------------
consensus_7016#0 AGGAGGAAGGCGTGCCGGTCGTTACTAGCGATACCTGAGCGTTGGGACCTGCGAGGGGCG 900
consensus_7016#1 ------------------------------------------------------------
consensus_7016#0 GGTCCGGGGAATGTTGGCAGTATTTTAGGGGCCCCGCAGGGCTGTAGCAAATGTACTATT 960
consensus_7016#1 ------------------------------------------------------------
consensus_7016#0 CGTTAGTCAACTGTGCCGATTATGCACTATGCTCGTGCTCGTTTATGCTACCCAATGACA 1020
consensus_7016#1 ------------------------------------------------------------
consensus_7016#0 ATAAATATAT 1030
consensus_7016#1 ----------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||