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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7019#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 993 fasta sequence
[CCTGAACCATCTCTCTTTTGTAATTAATTTTCTCCTTCTGTACTTCGTACTCATACTACATTGGGTCAAAACACAGAGCACATACTACCGCTG-GCTGCTAAAATTATAAATAGGTAAACGAAAACAGAACAAACAAAAAAAAACCAAACAGTATCTTGGCCGTACTATGCTAAAGGCCGGATTTAAGTCAAGTAGAACTAGAACAAATATTTTAGTGCAATTTGTAGTGAGGCTTGCGGTGCGGTTTTGGGCCATTGTCCTCTTCTGTAGTCTTTACTCACGCAACCGAAGTAGGGG-CGAGGGTGGCAGTTGCAGTGCAACTGCCATATTCAATAATGCTCTATAGTCCGCACTCCACACAGGAACGAATGCTAGCCACAGATGATAGTGAGAAAATTGGTTCTAGGAGTACACCGCATAGAACAATTAGCAATAGTAGTATACAGAACCGTATGTGTGTGT-T--TATCGAAAGTAATTCCAGTGTTTTT-CTGTGTTAAAACACAGATAGATTAAAAAAGACAGGGTTAAGTTACAGCTACACAGTAAGAGTGCCGAGGGGTTTAGTCGAATTGGCCGACATTTGCTCAAACAGGGCACAAGTAAAGTAAGAAACGTGTTCTTCCGTTCGTTTACTTTTGTGCATCGGATCACTTATTGGAAAAAGGAAATCCCGTTTTCTACGAGAGACTGAGCAATTAATACAACCTAAGCTTACGTTCTCTACGAATTTATGTTCCCGAACAGCGTATCGCACGCAAGATAAGGAGAACTTAATTAGGGATTATTATAAAATTCCTTTCCATATGGGTTGTATGTTTCGTTTTGTAAAGTTTTCCTTCTTTGGGTGATATTTTACGCTAGGTTTTGCTGTTCAGATTGTTAATAACGATCGGAGTGTGTATAGAGGATCAATTAAATTATTAATAAAAAGTAAAACCGTTTACCGTTTTATCCAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGC]
[+] EMBL BX624802 [CCTGAACCATCTCTCTTTTGTAATTAATTTTCTCCTTCTGTACTTCGTACTCATACTACATTGGGTCAAAACACAGAGCACATACTACCGCTG GCTGCTAAAATTATAAATAGGTAAACGAAAACAGAACAAAC AAAAAAAACCAAACAGTATCTTGGCCGTACTATGCTGAAGGCCGGATTTAAGTCAAGTAGAACTAGAACAAATATTTTAGTGCAATTTGTAGTGAGGCTTGCGGTGCGGTTTTGGGCCATTGTCCTCTTCTGTAGTCTTTACTCACGCAACCGAAGTAGGGG CGAGGGTGGCAGTTGCAGTGCAACTGCCATATTCAATAATGCTCTATAGTCCGCACTCCACACAGGAACGAATGCTAGCCACAGATGATAGTGAGAAAATTGGTTCTAGGAGTACACCGCATAGAACAATTAGCAATAGTAGTATACAGAACCGTATGTGTGTGT T TATCGAAAGTAATTCCAGTGTTTTT CTGTGTTAAAACACAGATAGATTAAAAAAGACAGGGTTAAGTTACAGCTACACAGTAAGAGTGCCGAGGGGTTTAGTCGAATTGGCCGACATTTGCTCAAACAGGGCACAAG ]
[+] EMBL CNS09OH7 [ TGAACCATCTCTCTTTTGTAATTAATTTTCTCCTTCTGTACTTCGTACTCATACTACATTGGGTCAAAACACAGAGCACATACTACCGCTGTGCTGCTAAAATTATAAATAGGTAAACGAAAACAGAACAAACAAAAAAAAACCAAACAGTATCTTGGCCGTACTATGCTAAAGGCCGGATTTAAGTCAAGTAGAACTAGAACAAATATTTTAGTGCAATTTGTAGTGAGGCTTGCGGTGCGGTTTTGGGCCATTGTCCTCTTCTGTAGTCTTTACTCACGCAACCGAAGTAGGGGCCGAGGGTGGCAGTTGCAGTGCAATTGCCATATTCAATAATGATCTTTAGTCCGCACTCCACACAGGAACGAATGCTAGCCACAGATGATAGTGAGAAAATTGGTTCTAGGAGTACACCGCATAGAACAATTAGCAATAGTAGTATACAGAACCGTATGTGTGTGTGTC TATCGAAAGTAATTCCAGTGTTTTT CTGTGTTAAAACACAGATAGATTAAAAAAGGCAGGGTTAAGTTACAGCTAAACAGTAAGAGTGCCGAGGGGTTTAGTCGAATTTGCCGACATTTGCTCAAACAGGGCACAAGTAAAGTAAGAAACGTGTTCTTCCGTTCGTTTACTTTTGTGCATCGGATCACTTATTGGAAAAAGGAAATCCCGTTTTCTACGAGAGACTGAGCAATTAATACAACCTAAGCTTACGTTCTCTACGAATTTATGTTCCCGAACAGCGTATCGCACGCAAGATAAGGAGAACTTAATTAGGGATTATTATAAAATTCCTTTCCATATGGGTTGTATGTTTCGTTTTGTAAAGTTTTCCTTCTTTGGGTGATATTTTACGCTAGGTTTTGCTGTTCAGATTGTTAATAACGATCGGAGTGTGTATAGAGGATCAATTAAATTATTAATAAAAAGTAAAACCGTTTACCGTTTTATCCAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGC]
[-] EMBL CNS09OH8 [ CTAAAATTATAAATAGGTAAACGAAAACAGAACAAACAAAAAAAAACCAAACAGTATCTTGGCCGTACTATGCTAAAGGCCGGATTTAAGTCAAGTAGAACTAGAACAAATATTTTAGTGCAATTTGTAGTGAGGCTTGCGGTGCGGTTTTGGGCCATTGTCCTCTTCTGTAGTCTTTAATCACGCAACCGAAGTAGGGGCCGAGGGTGGCAGTTGCAGTGCAATTGCCATATTCAATAATGATCTTTAGTCCGCACTCCAAACAGGAACGAATGCTAGCCACAGATGATAGTGAGAAAATTGGTTCTAGGAGTACCCCGCATAGAACAATTAGCAATAGTAGTATAAAGAACCGTATGTGTGTGT TTCTATCGAAAGTAATTCCAGTGTTTTTACTGTGTTAAAACAAAGATAGATTAAAAAAGGCAGGGTTAAGTTACAGCTAAACAGTAAGAGTGCCGAGGGGTTTAGTCGAATTTGCCGACATTTGCTCAAACAGGGCACAAGTAAAGTAAGAAACGTGTTCTTCCGTTCGTTTACTTTTGTGCATCGGATCACTTATTGGAAAAAGGAAATCCCGTTTTCTACGAGAGACTGAGCAATTAATACAACCTAAGCTTACGTTCTCTACGAATTTATGTTCCCGAACAGCGTTTCGCACGCAAAATAAGGAGAACTT ]
[+] EMBL BX616877 [ AAGTCAAGTAGAACTAGAACAAATATTTTAGTGCAATTTGTAGTGAGGCTTGCGGTGCGGTTTTGGGCCATTGTCCTCTTCTGTAGTCTTTACTCACGCAACCGAAGTAGGGG CGAGGGTGGCAGTTGCAGTGCAACTGCCATATTCAATAATGCTCTATAGTCCGCACTCCACACAGGAACGAATGCTAGCCACAGATGATAGTGAGAAAATTGGTTCTAGGAGTACACCGCATAGAACAATTAGCAATAGTAGTATACAGAACCGTATGTGTGTGT T TATCGATAGTAATTCCAGTGTTTTT CTGTGTTAAAACACAGATAGATTAAAAAAGACAGGGTTAAGTTACAGCTACACAGTAAGAGTGCCGAGGGGTTTAGTCGAATTGGCCGACATTTGCTCAAACAGGGCACAAGTAAAGTAAGAAACGTGTTCTTCCGTTCGTTTACTTTTGTGCATCGGATCACTTATTGGAAAAAGGAAATCCCGATTTCTACGAGAGACTGAGCAATTGATACAACTTAAGCTTACGTTCTCTACGAATTTATGTTCCCGAACAGCGTACCGCACGCAAGATAAGGAGAACTTAATTAGGGATTATTATTAAATTCCTTTCCATATGGGTTGTATGTTTCGTTTTGTGAAGTTTTCCTTCTTTGGGTGATATTTTACGCTAGGTTTTGCTGTTCAGATTGTTAATAACGAACGGAGTGTGTATtag ]
consensusID : consensus_7019#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence
[GAATCGCCCGAGGTTAGTGCAATTTGTAGTGAGGCTTGCGGTGCGGTTTTGGGCCATTGTCCTCTTCTGTAGTCTTTACTCACGCAACCGAAGTAGGGGCGAGGGTGGCAGTTGCAGTGCAACTGCCATATTCAATAATGCTCTATAGTCCGCACTCCACACAGGAACGAATGCTAGCCACAGATGATAGTGAGAAAATTGGTTCTAGGAGTACACCGCATAGAACAATTAGCAATAGTAGTATACAGAACCGTATGTGTGTGTTTATCGAAAGTAATTCCAGTGTTTTTCTGTGTTAAAACACAGCATAGATTAAAAAAGACAGGGTTAAGTTACAGCTACACAGTAAGAGTGCCGAGGGGTTTAGTCGAATTGGCCGACATTTGCTCAAACAGGGCACAAGTAAAGTAAGAAACGTGTTCTTCCGTTCGTTTACTTTTGTGCATCGGATCACTTATTGGAAACAAGGAAATCCCGATTTCTACGAGAGACTGAGCAATTGATACAACTTAAGCTTACGTTCTCTACGAATTTATGTTCCCGAACAGCGTACCGCACGCAAGATAACGGAGAACTTAATTACNGGATTATTATTAAATTCCTTTCCATATGGGTTGTATGTTTCGTCGTGAAGTTTCCTTCTTTGGGTGATATTTCACGCTANGTTTGCTGTCAGATTGTTAATAACGAA]
[+] EMBL AL930026 [GAATCGCCCGAGGTTAGTGCAATTTGTAGTGAGGCTTGCGGTGCGGTTTTGGGCCATTGTCCTCTTCTGTAGTCTTTACTCACGCAACCGAAGTAGGGGCGAGGGTGGCAGTTGCAGTGCAACTGCCATATTCAATAATGCTCTATAGTCCGCACTCCACACAGGAACGAATGCTAGCCACAGATGATAGTGAGAAAATTGGTTCTAGGAGTACACCGCATAGAACAATTAGCAATAGTAGTATACAGAACCGTATGTGTGTGTTTATCGAAAGTAATTCCAGTGTTTTTCTGTGTTAAAACACAGCATAGATTAAAAAAGACAGGGTTAAGTTACAGCTACACAGTAAGAGTGCCGAGGGGTTTAGTCGAATTGGCCGACATTTGCTCAAACAGGGCACAAGTAAAGTAAGAAACGTGTTCTTCCGTTCGTTTACTTTTGTGCATCGGATCACTTATTGGAAACAAGGAAATCCCGATTTCTACGAGAGACTGAGCAATTGATACAACTTAAGCTTACGTTCTCTACGAATTTATGTTCCCGAACAGCGTACCGCACGCAAGATAACGGAGAACTTAATTACNGGATTATTATTAAATTCCTTTCCATATGGGTTGTATGTTTCGTCGTGAAGTTTCCTTCTTTGGGTGATATTTCACGCTANGTTTGCTGTCAGATTGTTAATAACGAA]
consensusID : consensus_7019#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 608 fasta sequence
[GAAAAAAAAACCCGCACTCCACACAGGAACGAATGCTAACCACAGATGATAGTGAGAAAATTGGTTCTAGGAGTACACCGCATAGAACAATTAGCAATAGTAGTATACAGAACCGTATGTGTGTGTGTCTATCGAAAGTAATTCCAGTGTTTTTCTGTGTTAAAACACAGATAGATTAAAAAAGACAGGGTTAAGTTACAGCTAAACAGTAAGAGTGCCGAGGGGTTTAGTCGAATTTGCCGACATTTGCTCAAACAGGGCACAAGTAAAGTAAGAAACGTGTTCTTCCGTTCGTTTACTTTTGTGCATCGGATCACTTATTGGAAAAAGGAAATCCCGTTTTCTACGAGAGACTGAGCAATTAATACAACCTAAGCTTACGTTCTCTACGAATTTATGTTCCCGAACAGCGTATCCGCACGCAAGATAAGGAGAAGCTTAATTAGGGATTATTATAAAATTCCTTTCCATATGGGTTGTATGTTTCGTTTTGTAAAGTTTTCCTTCTTTGGGTGATATTTTACGCTAGGTTTTGCTGTTCAGATTGTTAATAACGATCGGAGTGTGTATAGAGGATCAATTAAATTATTAATAAAAAGTAAAACCGT]
[-] EMBL CNS08PNM [GAAAAAAAAACCCGCACTCCACACAGGAACGAATGCTAACCACAGATGATAGTGAGAAAATTGGTTCTAGGAGTACACCGCATAGAACAATTAGCAATAGTAGTATACAGAACCGTATGTGTGTGTGTCTATCGAAAGTAATTCCAGTGTTTTTCTGTGTTAAAACACAGATAGATTAAAAAAGACAGGGTTAAGTTACAGCTAAACAGTAAGAGTGCCGAGGGGTTTAGTCGAATTTGCCGACATTTGCTCAAACAGGGCACAAGTAAAGTAAGAAACGTGTTCTTCCGTTCGTTTACTTTTGTGCATCGGATCACTTATTGGAAAAAGGAAATCCCGTTTTCTACGAGAGACTGAGCAATTAATACAACCTAAGCTTACGTTCTCTACGAATTTATGTTCCCGAACAGCGTATCCGCACGCAAGATAAGGAGAAGCTTAATTAGGGATTATTATAAAATTCCTTTCCATATGGGTTGTATGTTTCGTTTTGTAAAGTTTTCCTTCTTTGGGTGATATTTTACGCTAGGTTTTGCTGTTCAGATTGTTAATAACGATCGGAGTGTGTATAGAGGATCAATTAAATTATTAATAAAAAGTAAAACCGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7019#0 CCTGAACCATCTCTCTTTTGTAATTAATTTTCTCCTTCTGTACTTCGTACTCATACTACA 60
consensus_7019#2 ------------------------------------------------------------
consensus_7019#1 ------------------------------------------------------------
consensus_7019#0 TTGGGTCAAAACACAGAGCACATACTACCGCTGGCTGCTAAAATTATAAATAGGTAAACG 120
consensus_7019#2 ------------------------------------------------------------
consensus_7019#1 ------------------------------------------------------------
consensus_7019#0 AAAACAGAACAAACAAAAAAAAACCAAACAGTATCTTGGCCGTACTATGCTAAAGGCCGG 180
consensus_7019#2 ------------------------------------------------------------
consensus_7019#1 ------------------------------------------------------------
consensus_7019#0 ATTTAAGTCAAGTAGAACTAGAACAAATATTTTAGTGCAATTTGTAGTGAGGCTTGCGGT 240
consensus_7019#2 ------------------------------------------------------------
consensus_7019#1 ------------------GAATCGCCCGAGGTTAGTGCAATTTGTAGTGAGGCTTGCGGT 42
consensus_7019#0 GCGGTTTTGGGCCATTGTCCTCTTCTGTAGTCTTTACTCACGCAACCGAAGTAGGGGCGA 300
consensus_7019#2 ------------------------------------------------------------
consensus_7019#1 GCGGTTTTGGGCCATTGTCCTCTTCTGTAGTCTTTACTCACGCAACCGAAGTAGGGGCGA 102
consensus_7019#0 GGGTGGCAGTTGCAGTGCAACTGCCATATTCAATAATGCTCTATAGTCCGCACTCCACAC 360
consensus_7019#2 ------------------------------------GAAAAAAAAACCCGCACTCCACAC 24
consensus_7019#1 GGGTGGCAGTTGCAGTGCAACTGCCATATTCAATAATGCTCTATAGTCCGCACTCCACAC 162
* * *************
consensus_7019#0 AGGAACGAATGCTAGCCACAGATGATAGTGAGAAAATTGGTTCTAGGAGTACACCGCATA 420
consensus_7019#2 AGGAACGAATGCTAACCACAGATGATAGTGAGAAAATTGGTTCTAGGAGTACACCGCATA 84
consensus_7019#1 AGGAACGAATGCTAGCCACAGATGATAGTGAGAAAATTGGTTCTAGGAGTACACCGCATA 222
************** *********************************************
consensus_7019#0 GAACAATTAGCAATAGTAGTATACAGAACCGTATGTGTGTGT--TTATCGAAAGTAATTC 478
consensus_7019#2 GAACAATTAGCAATAGTAGTATACAGAACCGTATGTGTGTGTGTCTATCGAAAGTAATTC 144
consensus_7019#1 GAACAATTAGCAATAGTAGTATACAGAACCGTATGTGTGTGT--TTATCGAAAGTAATTC 280
****************************************** ***************
consensus_7019#0 CAGTGTTTTTCTGTGTTAAAACACAG-ATAGATTAAAAAAGACAGGGTTAAGTTACAGCT 537
consensus_7019#2 CAGTGTTTTTCTGTGTTAAAACACAG-ATAGATTAAAAAAGACAGGGTTAAGTTACAGCT 203
consensus_7019#1 CAGTGTTTTTCTGTGTTAAAACACAGCATAGATTAAAAAAGACAGGGTTAAGTTACAGCT 340
************************** *********************************
consensus_7019#0 ACACAGTAAGAGTGCCGAGGGGTTTAGTCGAATTGGCCGACATTTGCTCAAACAGGGCAC 597
consensus_7019#2 AAACAGTAAGAGTGCCGAGGGGTTTAGTCGAATTTGCCGACATTTGCTCAAACAGGGCAC 263
consensus_7019#1 ACACAGTAAGAGTGCCGAGGGGTTTAGTCGAATTGGCCGACATTTGCTCAAACAGGGCAC 400
* ******************************** *************************
consensus_7019#0 AAGTAAAGTAAGAAACGTGTTCTTCCGTTCGTTTACTTTTGTGCATCGGATCACTTATTG 657
consensus_7019#2 AAGTAAAGTAAGAAACGTGTTCTTCCGTTCGTTTACTTTTGTGCATCGGATCACTTATTG 323
consensus_7019#1 AAGTAAAGTAAGAAACGTGTTCTTCCGTTCGTTTACTTTTGTGCATCGGATCACTTATTG 460
************************************************************
consensus_7019#0 GAAA-AAGGAAATCCCGTTTTCTACGAGAGACTGAGCAATTAATACAACCTAAGCTTACG 716
consensus_7019#2 GAAA-AAGGAAATCCCGTTTTCTACGAGAGACTGAGCAATTAATACAACCTAAGCTTACG 382
consensus_7019#1 GAAACAAGGAAATCCCGATTTCTACGAGAGACTGAGCAATTGATACAACTTAAGCTTACG 520
**** ************ *********************** ******* **********
consensus_7019#0 TTCTCTACGAATTTATGTTCCCGAACAGCGTATC-GCACGCAAGATAAGGAGAA-CTTAA 774
consensus_7019#2 TTCTCTACGAATTTATGTTCCCGAACAGCGTATCCGCACGCAAGATAAGGAGAAGCTTAA 442
consensus_7019#1 TTCTCTACGAATTTATGTTCCCGAACAGCGTACC-GCACGCAAGATAACGGAGAACTTAA 579
******************************** * ************* * * *****
consensus_7019#0 TTA-GGGATTATTATAAAATTCCTTTCCATATGGGTTGTATGTTTCGTTTTGTAAAGTTT 833
consensus_7019#2 TTA-GGGATTATTATAAAATTCCTTTCCATATGGGTTGTATGTTTCGTTTTGTAAAGTTT 501
consensus_7019#1 TTACNGGATTATTATTAAATTCCTTTCCATATGGGTTGTATGTTTCGTC--GTGAAGTTT 637
*** ********** ******************************** ** ******
consensus_7019#0 TCCTTCTTTGGGTGATATTTTACGCTAGGTTTTGCTGTTCAGATTGTTAATAACGATCGG 893
consensus_7019#2 TCCTTCTTTGGGTGATATTTTACGCTAGGTTTTGCTGTTCAGATTGTTAATAACGATCGG 561
consensus_7019#1 -CCTTCTTTGGGTGATATTTCACGCTANGTTT-GCTGT-CAGATTGTTAATAACGAA--- 691
******************* ****** **** ***** *****************
consensus_7019#0 AGTGTGTATAGAGGATCAATTAAATTATTAATAAAAAGTAAAACCGTTTACCGTTTTATC 953
consensus_7019#2 AGTGTGTATAGAGGATCAATTAAATTATTAATAAAAAGTAAAACCGT------------- 608
consensus_7019#1 ------------------------------------------------------------
consensus_7019#0 CAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGC 993
consensus_7019#2 ----------------------------------------
consensus_7019#1 ----------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||