cluster # 7025

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Anopheles gambiae
cluster # 7025 cluster # 7025 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7025#0 length = 911 sequences # 5

consensus_7025#1 length = 748 sequences # 1

consensusID : consensus_7025#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 911
fasta sequence

                              [CCGGTTGGTTTGTGGCGTCTCTACCCTAAAGCAGGCCAATATGTTTCTCAGCGGCATTGTGCCTTTAGTACTATTAGTAGTTCATTCATTGGAAGCATCGCCTGTTGAGCCTTTAGCACCGATTATTGGAGGATCTAATGTTGAGGATAAGAAGGTACCATATCTAGTTAGCATAACAGTAAACTCTTTCGTTTGTGGAGGTTCCATTATAGCGGATCGTTGGATATTGACTGCAGCACACTGTGTTAAAAGGAATATGGTGAAAAATGCAGCTGTTCGTGTTGAGACCAATAATTTTACTGCAAGTGGAACTTTATACCGCATCGATCGTGCTATAGCTCATGAAAAATACTTTCGAGGCGCATTTCGTGACGATGTTGGACTACTTCGTTTGAGGAGCCCTTTGAAGTTTGGAGAGCGTGTTAAAAAGATTGAATTATTGTCGCAGATTGTTCCGTATAATGCCACACTGACACTTGTCGGTAGGGGTTATATTAGTAAAGATAACAAAACAACAAAAATAACTCAAATGATCAAAGCTAAAAACATTGCCTTGAAGCTTTGTCGCAAGATGCAACCAGATTTTATTTACCCTGGACATCTGTGTACATTTGTTAAAAAAGGCAAAGGCACTTGTAGTGGTGACTCTGGAGGCCCAGTGGTATGGTATGGAAGACAGGTTGGCATAGTCAGCTGGTCAAAAGGATGCGGTGCGGGATATTTTGATGTCCACTCTCGCATCAGCTACTTCCTCCCATGGATTAAGGCAACGATTGCAGCAAATAGTGATTAGGAGTGACCAGTCATTCTATGTGACCATTGATTTTCACAAAAGATAAAGAAAATAATAAAGTTTTAGTGATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGGGGGGG]

[+] EMBL BM648398             [CCGGTTGGTTTGTGGCGTCTCTACCCTAAAGCAGGCCAATATGTTTCTCAGCGGCATTGTGCCTTTAGTACTATTAGTAGTTCATTCATTGGAAGCATCGCCTGTTGAGCCTTTAGCACCGATTATTGGAGGATCTAATGTTGAGGATAAGAAGGTACCATATCTAGTTAGCATAACAGTAAACTCTTTCGTTTGTGGAGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BM655765             [          ccgGGCGTCTCTACCCTAAAGCAGGCCAATATGTTTCTCAGCGGCATTGTGCCTTTAGTACTATTAGTAGTTCATTCATTGGAAGCATCGCCTGTTGAGCCTTTAGCACCGATTATTGGAGGATCTAATGTTGAGGATAAGAAGGTACCATATCTAGTTAGCATAACAGTAAACTCTTTCGTTTGTGGAGGTTCCATTATAGCGGATCGTTGGATATTGACTGCAGCACACTGTGTTAAAAGGAATATGGTGAAAAATGCAGCTGTTCGTGTTGAGACCAATAATTTTACTGCAAGTGGAACTTTATACCGCATCGATCGTGCTATAGCTCATGAAAAATACTTTCGAGGCGCATTTCGTGACGATGTTGGACTACTTCGTTTGAGGAGCCCTTTGAAGTTTGGAGAGCGTGTTAAAAAGATTGAATTATTGTCGCAGATTGTTCCGTATAATGCCACACTGACACTTGTCGGTAGGGGTTATATTAGTAAAGATAACAAAACAACAAAAATAACTCAAATGATCAAAGCTAAAAACATTGCCTTGAAGCTTTGTCGCAAGATGCAACCAGATTTTATTTACCCTGGACATCTGTGTA                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CNS09KSX             [              GCGTCTCTACCCTAAAGCAGGCCAATATGTTTCTCAGCGGCATTGTGCCTTTAGTACTATTAGTAGTTCATTCATTGGAAGCATCGCCTGTTGAGCCTTTAGCACCGATTATTAGAGGATCTAATGTTGAGGATAAGAAGGTACCATATCTAGTTAGCATAACAGTAAACTCTTTCGTTTGTGGAGGTTCCATTATAGCGGATCGTTGGATATTGACTGCAGCACACTGTGTTAAAAGGAATATGGTGAAAAATGCAGCTGTTCGTGTTGAGACCAATAATTTTACTGCAAGTGGAACTTTATACCGCATCGATCGTGCTATAGCTCATGAAAAATACTTTCGAGGCGCATTTCGTGACGATGTTGGACTACTTCGTTTGAGGAGCCCTTTGAAGTTTGGAGAGCGTGTTAAAAAGATTGAATTATTGTCGCAGATTGTTCCGTATAATGCCACACTGACACTTGTCGGTAGGGGTTATATTAGTAAAGATAACAAAACAACAAAAATAACTCAAATGATCAAAGCTAAAAACATTGCCTTGAAGCTTTGTCGCAAGATGCAACCAGATTTTATTTACCCTGGACATCTGTGTACATTTGTTAAAAAAGGCAAAGGCACTTGTAGTGGTGACTCTGGAGGCCCAGTGGTATGGTATGGAAGACAGGTTGGCATAGTCAGCTGGTCAAAAGGATGCGGTGCGGGATATTTTGATGTCCACTCTCGCATCAGCTACTTCCTCCCATGGATTAAGGCAACGATTGCAGCAAATAGTGATTAGGAGTGACCAGTCATTCTATGTGACCATTGATTTTCACAAAAGATAAAGAAAATAATAAAGTTTTAGTGATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGGGGGGG]
[+] EMBL BX624255             [                       CCCTAAAGCAGGCCAATATGTTTCTCAGCGGCATTGTGCCTTTAGTACTATTAGTAGTTCATTCATTGGAAGCATCGCCTGTTGAGCCTTTAGCACCGATTATTGGAGGATCTAATGTTGAGGATAAGAAGGTACCATATCTAGTTAGCATAACAGTAAACTCTTTCGTTTGTGGAGGTTCCATTATAGCGGATCGTTGGATATTGACTGCAGCACACTGTGTTAAAAGGAATATGGTGAAAAATGCAGCTGTTCGTGTTGAGACCAATAATTTTACTGCAAGTGGAACTTTATACCGCATCGATCGTGCTATAGCTCATGAAAAATACTTTCGAGGCGCATTTCGTGACGATGTNGGACTACTTCGTTTGAGGAGCCCTNNGAAGTTTGGAGAGCGTGTTAAAAAGATNGAATTATTGTCGCAGATTGTTCCGTATAATGCCACACTGACACTTGTCGGTAGGGGTTATATNAGTA                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CNS09KSY             [                                                                                                                                                                                                                                                                                                                                                                                            GACTACTTCGTTTGAGGAGCCCTTTGAAGTTTGGAGAGCGTGTTAAAAAAATTGAATTATTTTCGCAGATTGTTCCGTATAATGCCACACTGACACTTGTCGGTAGGGGTTATATTAGTAAAGATAACAAAACAACAAAAATAACTCAAATGATCAAAGCTAAAAAAATTGCCTTGAAGCTTTGTCGCAAGATGCAACCAGATTTTATTTACCCTGGACATCTGTGTACATTTGTTAAAAAAGGCAAAGGCACTTGTAGTGGTGACTCTGGAGGCCCAGTGGTATGGTATGGAAGACAGGTTGGCATAGTCAGCTGGTCAAAAGGATGCGGTGCGGGATATTTTGATGTCCACTCTCGCATCAGCTACTTCCTCCCATGGATTAAGGCAACGATTGCAGCAAATAGTGATTTGGAGTGACCAGTCATTTTTTGTGACCATTGA TTTCACAAAAGATAAAGAAAATAATAAAGTTTTAGT                                                   ]




>consensus_7025#0
CCGGTTGGTTTGTGGCGTCTCTACCCTAAAGCAGGCCAATATGTTTCTCAGCGGCATTGT
GCCTTTAGTACTATTAGTAGTTCATTCATTGGAAGCATCGCCTGTTGAGCCTTTAGCACC
GATTATTGGAGGATCTAATGTTGAGGATAAGAAGGTACCATATCTAGTTAGCATAACAGT
AAACTCTTTCGTTTGTGGAGGTTCCATTATAGCGGATCGTTGGATATTGACTGCAGCACA
CTGTGTTAAAAGGAATATGGTGAAAAATGCAGCTGTTCGTGTTGAGACCAATAATTTTAC
TGCAAGTGGAACTTTATACCGCATCGATCGTGCTATAGCTCATGAAAAATACTTTCGAGG
CGCATTTCGTGACGATGTTGGACTACTTCGTTTGAGGAGCCCTTTGAAGTTTGGAGAGCG
TGTTAAAAAGATTGAATTATTGTCGCAGATTGTTCCGTATAATGCCACACTGACACTTGT
CGGTAGGGGTTATATTAGTAAAGATAACAAAACAACAAAAATAACTCAAATGATCAAAGC
TAAAAACATTGCCTTGAAGCTTTGTCGCAAGATGCAACCAGATTTTATTTACCCTGGACA
TCTGTGTACATTTGTTAAAAAAGGCAAAGGCACTTGTAGTGGTGACTCTGGAGGCCCAGT
GGTATGGTATGGAAGACAGGTTGGCATAGTCAGCTGGTCAAAAGGATGCGGTGCGGGATA
TTTTGATGTCCACTCTCGCATCAGCTACTTCCTCCCATGGATTAAGGCAACGATTGCAGC
AAATAGTGATTAGGAGTGACCAGTCATTCTATGTGACCATTGATTTTCACAAAAGATAAA
GAAAATAATAAAGTTTTAGTGATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCC
ACATGGGGGGG

consensusID : consensus_7025#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 748
fasta sequence

                              [TGTTTCTCAGCGGCATTGTGCCTTTAGTACTATTAGTAGTTCATTCATTGGAAGCATCGCCTGTTGAGCCTTTAGCACCGATTATTGGAGGATCTAATGTTGAGGATAAGAAGGTACCATATCTAGTTAGCATAACAGTAAACTCTTTCGTTTGTGGAGGTTCCATTATAGCGGATCGTTGGATATTGACTGCAGCACACTGTGTTAAAAGGTATGAAAAATATTCATTACAACAAAAAAACGAATTTACGGTTCAATATTTTTAACATAAAGGAATATGGTGAAAAATGCAGCTGTTCGTGTTGAGACCAATAATTTTACTGCAAGTGGAACTTTATACCGCATCGATCGTGCTATAGCTCATGAAAAGTAAGGCTACAGGCTAATGTGACAACAGTGACGTGATGTCGTGGTACATTGATCATCTCGGTATCATTCCTATAGATACTTTCGAGGCGCATTTCGTGACGATGTTGGACTACTTCGTTTGAGGAGCCCTTTGAAGTTTGGAGAGCGTGTTAAAAAGATTGAATTATTGTCGCAGATTGTTCCGTATAATGCCACACTGACACTTGTCGGTANGGGTTATATTAGTAAAGATAACAAAACAACAAAAATAACTCAAATGATCAAAGCTAAAAACATTGCCTTGAAGCTTTGTCGCAAGATGCAACCAGATTTTATTTACCCTGGACATCTGTGTACATTTGTTAAAAAANGCAANGCACTTGTAGTGTGAGTAAATAAT]

[+] EMBL BX627017             [TGTTTCTCAGCGGCATTGTGCCTTTAGTACTATTAGTAGTTCATTCATTGGAAGCATCGCCTGTTGAGCCTTTAGCACCGATTATTGGAGGATCTAATGTTGAGGATAAGAAGGTACCATATCTAGTTAGCATAACAGTAAACTCTTTCGTTTGTGGAGGTTCCATTATAGCGGATCGTTGGATATTGACTGCAGCACACTGTGTTAAAAGGTATGAAAAATATTCATTACAACAAAAAAACGAATTTACGGTTCAATATTTTTAACATAAAGGAATATGGTGAAAAATGCAGCTGTTCGTGTTGAGACCAATAATTTTACTGCAAGTGGAACTTTATACCGCATCGATCGTGCTATAGCTCATGAAAAGTAAGGCTACAGGCTAATGTGACAACAGTGACGTGATGTCGTGGTACATTGATCATCTCGGTATCATTCCTATAGATACTTTCGAGGCGCATTTCGTGACGATGTTGGACTACTTCGTTTGAGGAGCCCTTTGAAGTTTGGAGAGCGTGTTAAAAAGATTGAATTATTGTCGCAGATTGTTCCGTATAATGCCACACTGACACTTGTCGGTANGGGTTATATTAGTAAAGATAACAAAACAACAAAAATAACTCAAATGATCAAAGCTAAAAACATTGCCTTGAAGCTTTGTCGCAAGATGCAACCAGATTTTATTTACCCTGGACATCTGTGTACATTTGTTAAAAAANGCAANGCACTTGTAGTGTGAGTAAATAAT]




>consensus_7025#1
TGTTTCTCAGCGGCATTGTGCCTTTAGTACTATTAGTAGTTCATTCATTGGAAGCATCGC
CTGTTGAGCCTTTAGCACCGATTATTGGAGGATCTAATGTTGAGGATAAGAAGGTACCAT
ATCTAGTTAGCATAACAGTAAACTCTTTCGTTTGTGGAGGTTCCATTATAGCGGATCGTT
GGATATTGACTGCAGCACACTGTGTTAAAAGGTATGAAAAATATTCATTACAACAAAAAA
ACGAATTTACGGTTCAATATTTTTAACATAAAGGAATATGGTGAAAAATGCAGCTGTTCG
TGTTGAGACCAATAATTTTACTGCAAGTGGAACTTTATACCGCATCGATCGTGCTATAGC
TCATGAAAAGTAAGGCTACAGGCTAATGTGACAACAGTGACGTGATGTCGTGGTACATTG
ATCATCTCGGTATCATTCCTATAGATACTTTCGAGGCGCATTTCGTGACGATGTTGGACT
ACTTCGTTTGAGGAGCCCTTTGAAGTTTGGAGAGCGTGTTAAAAAGATTGAATTATTGTC
GCAGATTGTTCCGTATAATGCCACACTGACACTTGTCGGTANGGGTTATATTAGTAAAGA
TAACAAAACAACAAAAATAACTCAAATGATCAAAGCTAAAAACATTGCCTTGAAGCTTTG
TCGCAAGATGCAACCAGATTTTATTTACCCTGGACATCTGTGTACATTTGTTAAAAAANG
CAANGCACTTGTAGTGTGAGTAAATAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7025#0      CCGGTTGGTTTGTGGCGTCTCTACCCTAAAGCAGGCCAATATGTTTCTCAGCGGCATTGT 60
consensus_7025#1      -----------------------------------------TGTTTCTCAGCGGCATTGT 19
                                                               *******************

consensus_7025#0      GCCTTTAGTACTATTAGTAGTTCATTCATTGGAAGCATCGCCTGTTGAGCCTTTAGCACC 120
consensus_7025#1      GCCTTTAGTACTATTAGTAGTTCATTCATTGGAAGCATCGCCTGTTGAGCCTTTAGCACC 79
                      ************************************************************

consensus_7025#0      GATTATTGGAGGATCTAATGTTGAGGATAAGAAGGTACCATATCTAGTTAGCATAACAGT 180
consensus_7025#1      GATTATTGGAGGATCTAATGTTGAGGATAAGAAGGTACCATATCTAGTTAGCATAACAGT 139
                      ************************************************************

consensus_7025#0      AAACTCTTTCGTTTGTGGAGGTTCCATTATAGCGGATCGTTGGATATTGACTGCAGCACA 240
consensus_7025#1      AAACTCTTTCGTTTGTGGAGGTTCCATTATAGCGGATCGTTGGATATTGACTGCAGCACA 199
                      ************************************************************

consensus_7025#0      CTGTGTTAAAAGG----------------------------------------------- 253
consensus_7025#1      CTGTGTTAAAAGGTATGAAAAATATTCATTACAACAAAAAAACGAATTTACGGTTCAATA 259
                      *************                                               

consensus_7025#0      ---------------AATATGGTGAAAAATGCAGCTGTTCGTGTTGAGACCAATAATTTT 298
consensus_7025#1      TTTTTAACATAAAGGAATATGGTGAAAAATGCAGCTGTTCGTGTTGAGACCAATAATTTT 319
                                     *********************************************

consensus_7025#0      ACTGCAAGTGGAACTTTATACCGCATCGATCGTGCTATAGCTCATGAAAA---------- 348
consensus_7025#1      ACTGCAAGTGGAACTTTATACCGCATCGATCGTGCTATAGCTCATGAAAAGTAAGGCTAC 379
                      **************************************************          

consensus_7025#0      ------------------------------------------------------------
consensus_7025#1      AGGCTAATGTGACAACAGTGACGTGATGTCGTGGTACATTGATCATCTCGGTATCATTCC 439
                                                                                  

consensus_7025#0      -----ATACTTTCGAGGCGCATTTCGTGACGATGTTGGACTACTTCGTTTGAGGAGCCCT 403
consensus_7025#1      TATAGATACTTTCGAGGCGCATTTCGTGACGATGTTGGACTACTTCGTTTGAGGAGCCCT 499
                           *******************************************************

consensus_7025#0      TTGAAGTTTGGAGAGCGTGTTAAAAAGATTGAATTATTGTCGCAGATTGTTCCGTATAAT 463
consensus_7025#1      TTGAAGTTTGGAGAGCGTGTTAAAAAGATTGAATTATTGTCGCAGATTGTTCCGTATAAT 559
                      ************************************************************

consensus_7025#0      GCCACACTGACACTTGTCGGTAGGGGTTATATTAGTAAAGATAACAAAACAACAAAAATA 523
consensus_7025#1      GCCACACTGACACTTGTCGGTANGGGTTATATTAGTAAAGATAACAAAACAACAAAAATA 619
                      ********************** *************************************

consensus_7025#0      ACTCAAATGATCAAAGCTAAAAACATTGCCTTGAAGCTTTGTCGCAAGATGCAACCAGAT 583
consensus_7025#1      ACTCAAATGATCAAAGCTAAAAACATTGCCTTGAAGCTTTGTCGCAAGATGCAACCAGAT 679
                      ************************************************************

consensus_7025#0      TTTATTTACCCTGGACATCTGTGTACATTTGTTAAAAAAGGCAAAGGCACTTGTAGTGGT 643
consensus_7025#1      TTTATTTACCCTGGACATCTGTGTACATTTGTTAAAAAANGCAANG-CACTTGTAGTG-T 737
                      *************************************** **** * *********** *

consensus_7025#0      GACTCTGGAGGCCCAGTGGTATGGTATGGAAGACAGGTTGGCATAGTCAGCTGGTCAAAA 703
consensus_7025#1      GAGTAAATAAT------------------------------------------------- 748
                      ** *    *                                                   

consensus_7025#0      GGATGCGGTGCGGGATATTTTGATGTCCACTCTCGCATCAGCTACTTCCTCCCATGGATT 763
consensus_7025#1      ------------------------------------------------------------
                                                                                  

consensus_7025#0      AAGGCAACGATTGCAGCAAATAGTGATTAGGAGTGACCAGTCATTCTATGTGACCATTGA 823
consensus_7025#1      ------------------------------------------------------------
                                                                                  

consensus_7025#0      TTTTCACAAAAGATAAAGAAAATAATAAAGTTTTAGTGATGCAAAAAAAAAAAAAAAAAA 883
consensus_7025#1      ------------------------------------------------------------
                                                                                  

consensus_7025#0      AAAAAAAAAAAAAGGCCACATGGGGGGG 911
consensus_7025#1      ----------------------------