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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7034#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 721 fasta sequence
[GNGCGTAAATAGAACGAGGCCCAGTAAGCAAGAAGAAAAAAGGAAGGAGAAAAAAAACAAATTTGAAAAAAAATGACAAAGCAACACAAAAAAACGGCAAAATTGCAACAGCAAACAAGCAAGGCAAAGTAGTAGTTCAAATTGGATAAGCATATTCCTACTTATAGTTGTATTGTTATGCATGAAATTGTAAAGAGAGACAGAGAGAGAAAGGTAGAGAGAGGAAGTCGAAACAGTGCATTCTTACACCTGCTCTTTGGAAACATTGGTTTAGGAGAGGGGAGCAGCAACACATCACCGATAGATTTATTCCTGTAACATGGAAGAGTAATTAGTACTGTAAGTGTAAATGCATTGTGCATGTGTGGTGTTTTCATAAAGTGCGCAAAAAAACACACATACACACATGCACTAAATAATGGAAAAAAATGAATGCGTAGAAATGCCGTACAAGCAACAAGCATGCATGATATATATGCAGCCTTGTGGAGGAAGGAAGATGCATTTGTTTCCACG------GCAGCAGCATCACAGTGTCCGTCTGTTGCGTGCTGATGTTAGCAATGAAGCCAGCGTAGTGTACTAGATTGCGCCACAGGAACGTGGTTTAGGCATGCGCATTGTTGCTGCTCCTAGTAGCGTATTANTAGCAAACTGCACGCGTTGTTCTCGTTTTAGNTTTCAGCCGCTTTGCAAAGCAACAACAACATGATTTGTGTGTCTG]
[+] EMBL BX625329 [GNGCGTAAATAGAACGAGGCCCAGTAAGCAAGAAGAAAAAAGGAAGGAGAAAAAAAACAAATTTGAAAAAAAATGACAAAGCAACACAAAAAAACGGCAAAATTGCAACAGCAAACAAGCAAGGCAAAGTAGTAGTTCAAATTGGATAAGCATATTCCTACTTATAGTTGTATTGTTATGCATGAAATTGTAAAGAGAGACAGAGAGAGAAAGGTAGAGAGAGGAAGTCGAAACAGTGCATTCTTACACCTGCTCTTTGGAAACATTGGTTTAGGAGAGGGGAGCAGCAACACATCACCGATAGATTTATTCCTGTAACATGGAAGAGTAATTAGTACTGTAAGTGTAAATGCATTGTGCATGTGTGGTGTTTTCATAAAGTGCGCAAAAAAACACACATACACACATGCACTAAATAATGGAAAAAAATGAATGCGTAGAAATGCCGTACAAGCAACAAGCATGCATGATATATATGCAGCCTTGTGGAGGAAGGAAGATGCATTTGTTTCCACG GCAGCAGCATCACAGTGTCCGTCTGTTGCGTGCTGATGTTAGCNATGAAGCCAGCGTAGTGTACTAna ]
[+] EMBL BX628922 [ gGAC AAGCAACACAAAAAAACGGCAAAATTGCAACAGCAAACAAACAAGGCAAAGTAGTAGTTCAAATTGGATAAGCATATTCCTACTTATAGTTGTATTGTTATGCATGAAATTGTAAAGAGAGACAGAGAGAGAAAGGTAGAAAGGGGAAGTCGAAACAGTGCATTCTTACACCTGCTCTTTGGAAACATTGGTTTAGGAGAGGGGAGCAGCAACACATCACCGATAGATTTATTCCTGTAACATGGAAGAGTAATTAGTACTGTAAGTGTAAATGCATTGTGCATGTGTGGTGTTTTCATAAAGTGCGCAAAAAAACACACATACACACATGCACTAAATAATGG AAAAAATGAATGCGTAGAAATGCCGTACAAGCAACAAGCATGCATGATATATATGCAGCCTTGTGGAGGAAGGAAGATGCATTTGTTTCCACGGCAGCAGCAGCAGCATCACAGTGTCCGTCTGTTGCGTGCTGATGTTAGCAATGAAGCCAGCGTAGTGTACTAGATTGCGCCACAGGAACGTGGTTTAGGCATGCGCATTGTTGCTGCTC ]
[+] EMBL BX620245 [ CAACAGCAAACAAGCAAGGCAAAGTAGTANTTCAAATTGGATAAGCATATTCCTACTTATAGTTGTATTGTTATGCATGAAATTGTAAAGAGAGACAGAGAGAGAAAGGTAGAGAGAGGAAGTCGAAACAGTGCATTCTTACACCTGCTCTTTGGAAACATTGGTTTAGGAGAGGGGAGCAGCAACACATCACCGATAGATTTATTCCTGTAACATGGAAGAGTAATTAGTACTGTAAGTGTAAATGCATTGTGCATGTGTGGTGTTTTCATAAAGTGCGCAAAAAAACACACATACACACATGCACTAAATAATGGAAAAAAATGAATGCGTANAAATGCCGTACAAGCAACAAGCATGCATGATATATATGCAGCCTTGTGGAGGAAGGAAGATGCATTTGTTTCCACG GCAGCAGCATCACAGTGTCCGTCTGTTGCGTGCTGATGTTAGCAATGAAGCCAGCGTAGTGTACTAGATTGCGCCACAGGAACGTGGTTTAGGCATGCGCATTGTTGCTGCTCCTAGTAGCGTATTANTAGCAAACTGCACGCGTTGTTCTCGTTTTAGNTTTCAGCCGCTTTGCAAAGCAACAACAACATGATTTGTGTGTCTG]
consensusID : consensus_7034#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 611 fasta sequence
[CCGGCAACACAAAAAAAAACCGCAAAATTGCAACAGCAAACAAACAAGGCAAAGTAGTAGTTCAAATTGGATAAGCATATTCCTACTTATAGTTGTATTGTTATGCATGAAATTGTAAAGAGAGACAGAGAGAGAAAGGTAGAAAGAGGAAGTCGAAACAGTGCATTCTTACACCTGCTCTTTGGAAACATTGGTTTAGGAGAGGGGAGCAGCAACACATCACCGATAGATTTATTCCTGTAACATGGAAGAGTAATTAGTACTGTAAGTGTAAATGCATTGTGCATGTGTGGTGTTTTCATAAAGCGCGCAAAAAAAAACACACATACACATATGCACTAAATAAGGGAAAAAATGGATGCGTAGAAATGCCGTACAAGCAACAAGCATGCATGAGATATATGCAGCCTTGTGGAGGAAGGAAGATGCATTTGTTTCCACGGCAGCAGCAGCAGCAGCAGCATCACAGTGTCCGTCTGTTGCGTGCTGATGTTAGCAATGAAGCCAGCGTAGTGTACTAGATTGCGCCACAGGAACGTGGTTTAGGCATGCGCATTGTTGCTGCTCCTAGTAGCGTATTAGTAGCAAACTGCACGCGTTGTTCTCGTTTT]
[+] EMBL BM628298 [CCGGCAACACAAAAAAAAACCGCAAAATTGCAACAGCAAACAAACAAGGCAAAGTAGTAGTTCAAATTGGATAAGCATATTCCTACTTATAGTTGTATTGTTATGCATGAAATTGTAAAGAGAGACAGAGAGAGAAAGGTAGAAAGAGGAAGTCGAAACAGTGCATTCTTACACCTGCTCTTTGGAAACATTGGTTTAGGAGAGGGGAGCAGCAACACATCACCGATAGATTTATTCCTGTAACATGGAAGAGTAATTAGTACTGTAAGTGTAAATGCATTGTGCATGTGTGGTGTTTTCATAAAGCGCGCAAAAAAAAACACACATACACATATGCACTAAATAAGGGAAAAAATGGATGCGTAGAAATGCCGTACAAGCAACAAGCATGCATGAGATATATGCAGCCTTGTGGAGGAAGGAAGATGCATTTGTTTCCACGGCAGCAGCAGCAGCAGCAGCATCACAGTGTCCGTCTGTTGCGTGCTGATGTTAGCAATGAAGCCAGCGTAGTGTACTAGATTGCGCCACAGGAACG ]
[+] EMBL BM592715 [ ccgAAAAAAAACCGCAAAATTGCAACAGCAAACAAACAAGGCAAAGTAGTAGTTCAAATTGGATAAGCATATTCCTACTTATAGTTGTATTGTTATGCATGAAATTGTAAAGAGAGACAGAGAGAGAAAGGTAGAAAGAGGAAGTCGAAACAGTGCATTCTTACACCTGCTCTTTGGAAACATTGGTTTAGGAGAGGGGAGCAGCAACACATCACCGATAGATTTATTCCTGTAACATGGAAGAGTAATTAGTACTGTAAGTGTAAATGCATTGTGCATGTGTGGTGTTTTCATAAAGCGCGCAAAAAAAAACACACATACACATATGCACTAAATAAGGGAAAAAATGGATGCGTAGAAATGCCGTACAAGCAACAAGCATGCATGAGATATATGCAGCCTTGTGGAGGAAGGAAGATGCATTTGTTTCCACGGCAGCAGCAGCAGCAGCAGCATCACAGTGTCCGTCTGTTGCGTGCTGATGTTAGCAATGAAGCCAGCGTAGTGTACTAGATTGCGCCACAGGAACGTGGTTTAGGCATGCGCATTGTTGCTGCTCCTAGTAGCGTATTAGTAGCAAACTGCACGCGTTGTTCTCGTTTT]
consensusID : consensus_7034#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence
[AGAATCNCCCGAGGTTTACACACATGCACTAAATATGGAAAAAATGAATGCGTAGAAATGCCGTACAAGCAACAAGCATGCATGATATATATGCAGCCTTGTGGAGGAAGGAAGATGCATTTGTTTCCACGGCAGCAGCAGCAGCATCACAGTGTCCGTCTGTTGCGTGCTGATGTTAGCAATGAAGCCAGCGTAGTGTACTAGATTGCGCCACAGGAACGTGGTTTAGGCATGCGCATTGTTGCTGCTCCTAGTAGCGTATTAGTAGCAAACTGCACGCGTTGTTCTCGTTTTAGTTTTCAGCCGCTTTGCAAAGCAACAACAACATGATTTGTGTGTCTGACTGAGTTCCGGCAAATCCTTTTCGCCGCGATGGCGCCTCTCGTTAAGCGTTTAATTATTATTATTTTTAAAAATTTCTTAGAACCCTCCAAACGCGTGTACAT]
[+] EMBL AL930412 [AGAATCNCCCGAGGTTTACACACATGCACTAAATATGGAAAAAATGAATGCGTAGAAATGCCGTACAAGCAACAAGCATGCATGATATATATGCAGCCTTGTGGAGGAAGGAAGATGCATTTGTTTCCACGGCAGCAGCAGCAGCATCACAGTGTCCGTCTGTTGCGTGCTGATGTTAGCAATGAAGCCAGCGTAGTGTACTAGATTGCGCCACAGGAACGTGGTTTAGGCATGCGCATTGTTGCTGCTCCTAGTAGCGTATTAGTAGCAAACTGCACGCGTTGTTCTCGTTTTAGTTTTCAGCCGCTTTGCAAAGCAACAACAACATGATTTGTGTGTCTGACTGAGTTCCGGCAAATCCTTTTCGCCGCGATGGCGCCTCTCGTTAAGCGTTTAATTATTATTATTTTTAAAAATTTCTTAGAACCCTCCAAACGCGTGTACAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7034#0 GNGCGTAAATAGAACGAGGCCCAGTAAGCAAGAAGAAAAAAGGAAGGAGAAAAAAAACAA 60
consensus_7034#1 ------------------------------------------------------------
consensus_7034#2 ------------------------------------------------------------
consensus_7034#0 ATTTGAAAAAAAATGACAAAGCAACACAAAAAAACGGCAAAATTGCAACAGCAAACAAGC 120
consensus_7034#1 ------------CCGGCAACACAA---AAAAAAACCGCAAAATTGCAACAGCAAACAAAC 45
consensus_7034#2 ------------------------------------------------------------
consensus_7034#0 AAGGCAAAGTAGTAGTTCAAATTGGATAAGCATATTCCTACTTATAGTTGTATTGTTATG 180
consensus_7034#1 AAGGCAAAGTAGTAGTTCAAATTGGATAAGCATATTCCTACTTATAGTTGTATTGTTATG 105
consensus_7034#2 ------------------------------------------------------------
consensus_7034#0 CATGAAATTGTAAAGAGAGACAGAGAGAGAAAGGTAGAGAGAGGAAGTCGAAACAGTGCA 240
consensus_7034#1 CATGAAATTGTAAAGAGAGACAGAGAGAGAAAGGTAGAAAGAGGAAGTCGAAACAGTGCA 165
consensus_7034#2 ------------------------------------------------------------
consensus_7034#0 TTCTTACACCTGCTCTTTGGAAACATTGGTTTAGGAGAGGGGAGCAGCAACACATCACCG 300
consensus_7034#1 TTCTTACACCTGCTCTTTGGAAACATTGGTTTAGGAGAGGGGAGCAGCAACACATCACCG 225
consensus_7034#2 ------------------------------------------------------------
consensus_7034#0 ATAGATTTATTCCTGTAACATGGAAGAGTAATTAGTACTGTAAGTGTAAATGCATTGTGC 360
consensus_7034#1 ATAGATTTATTCCTGTAACATGGAAGAGTAATTAGTACTGTAAGTGTAAATGCATTGTGC 285
consensus_7034#2 ------------------------------------------------------------
consensus_7034#0 ATGTGTGGTGTTTTCATAAAGTGCGCAAAAAAA--C-ACACATACACACATGCACTAAAT 417
consensus_7034#1 ATGTGTGGTGTTTTCATAAAGCGCGCAAAAAAAAAC-ACACATACACATATGCACTAAAT 344
consensus_7034#2 --------------------------AGAATCNCCCGAGGTTTACACACATGCACTAAAT 34
* ** * * ****** ***********
consensus_7034#0 AATGGAAAAAAATGAATGCGTAGAAATGCCGTACAAGCAACAAGCATGCATGATATATAT 477
consensus_7034#1 AA-GGGAAAAAATGGATGCGTAGAAATGCCGTACAAGCAACAAGCATGCATGAGATATAT 403
consensus_7034#2 AT--GGAAAAAATGAATGCGTAGAAATGCCGTACAAGCAACAAGCATGCATGATATATAT 92
* * ******** ************************************** ******
consensus_7034#0 GCAGCCTTGTGGAGGAAGGAAGATGCATTTGTTTCCACGGCAGCAGCA------------ 525
consensus_7034#1 GCAGCCTTGTGGAGGAAGGAAGATGCATTTGTTTCCACGGCAGCAGCAGCAGCAGCAGCA 463
consensus_7034#2 GCAGCCTTGTGGAGGAAGGAAGATGCATTTGTTTCCACGGCAGCAGCAGCAGCA------ 146
************************************************
consensus_7034#0 TCACAGTGTCCGTCTGTTGCGTGCTGATGTTAGCAATGAAGCCAGCGTAGTGTACTAGAT 585
consensus_7034#1 TCACAGTGTCCGTCTGTTGCGTGCTGATGTTAGCAATGAAGCCAGCGTAGTGTACTAGAT 523
consensus_7034#2 TCACAGTGTCCGTCTGTTGCGTGCTGATGTTAGCAATGAAGCCAGCGTAGTGTACTAGAT 206
************************************************************
consensus_7034#0 TGCGCCACAGGAACGTGGTTTAGGCATGCGCATTGTTGCTGCTCCTAGTAGCGTATTANT 645
consensus_7034#1 TGCGCCACAGGAACGTGGTTTAGGCATGCGCATTGTTGCTGCTCCTAGTAGCGTATTAGT 583
consensus_7034#2 TGCGCCACAGGAACGTGGTTTAGGCATGCGCATTGTTGCTGCTCCTAGTAGCGTATTAGT 266
********************************************************** *
consensus_7034#0 AGCAAACTGCACGCGTTGTTCTCGTTTTAGNTTTCAGCCGCTTTGCAAAGCAACAACAAC 705
consensus_7034#1 AGCAAACTGCACGCGTTGTTCTCGTTTT-------------------------------- 611
consensus_7034#2 AGCAAACTGCACGCGTTGTTCTCGTTTTAGTTTTCAGCCGCTTTGCAAAGCAACAACAAC 326
****************************
consensus_7034#0 ATGATTTGTGTGTCTG-------------------------------------------- 721
consensus_7034#1 ------------------------------------------------------------
consensus_7034#2 ATGATTTGTGTGTCTGACTGAGTTCCGGCAAATCCTTTTCGCCGCGATGGCGCCTCTCGT 386
consensus_7034#0 ------------------------------------------------------------
consensus_7034#1 ------------------------------------------------------------
consensus_7034#2 TAAGCGTTTAATTATTATTATTTTTAAAAATTTCTTAGAACCCTCCAAACGCGTGTACAT 446
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||