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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7036#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1954 fasta sequence
[GCCCGTTTAAGCGTCTTCTTTATTCAGAGTCATCCAAACCATCCCCATCCTTGATGCCCATTTTATCGTCGTACTCCTCTTCGGTGATTTTTTTCCTTTTCACTTTTTTCAACAATCGAATATCGTTGGCCAGCTCCTCGAGGTCTTCCTGCGAATATT--TGGTCCGTTTCTTTTTGGCCGGCACTGCTTCACCCGCCTCGATGGCGGCCTTTCGTACCTGTTTCTTTTCCCTTCGCTTCTTACGGATTTCCTTCCGCTCCTCGCGTGCCTTGCTGGCCTGCTCCCAGGGTATCGTTTTCTTCCGGATCAACTTCTTCTTCCCCTTCCATTCGCCTGTTTCGGCGTACGTTTTCAGCTTCGCCTGAAATGACGCTTGCTTTTGCTTATCCTTGTACGCTAGCTTGAATACGTCCACCAACTGTTCTGGTCCTTGGAACGTTTCCTTGAACTGTGGCTTCATCTCGGGCATGCGGGGCAACTGCAGCAGTTCGTAGCTGGTCGCTACCTTACCGAGATCGAGATCCTTCAATCGCAGGATTAAATTGCACTCGTGCTTACTGTACGCCTGCACGTGCGACACAAACGCTCGATTCGCTTGATCGAATGTGGCGCGATCCGTCTTTTGCAGCTGATGCAGTTTGCGTAACGTTTCCGCCAATCTTGCTTCGGGAATTTCCAGTTCCACCTCCTTGAGGGCAACCTTTTGATTGCGCGTCAGAAAGTCCACGTAAGCGTCCTCGGTCGGCAGCAGCATAATTAGCGCATTACCTTCCGATCCCTGGCGTGCTGTGCGGCCTACACGATGCACAAATGCGGCCGCACTGGACGGTGGATCCCACTGTAGTACCCAGTCCACCTCGGGAATGTCGACGCCACGGGCAAGCACATCGGTACAGAGCAGCAGCGAACTGTCGGTTCGCGGAACGACTGCAGTATTCCGAAGCGTTGCGATTTCATTTTCCCGTGCAGCCCCAGTACTTGCATCGAGGGCACCAGAGCCGCCATAGCAACGGACCAATATTCAACGCAAGCGCACGTTGGTAAGAATAGCATCGCTTTCTTGATCTGTTGCGAGCTTATAAAGTCGAGCATAGCGACCATCTTCTGTTCCGGTTCGACGATCAGGTAGTAATTTTGCAGCAGCTTCGGCGTACTTGTGGTTGCCTTCATCGCGGACGCTCACCAGCACGGGATTGCGTAAACCGGCGCGCATTAAATCCTTCACCTCCTTGGTTTGCGTTGCCGAAAACAGTCCCGTACGGCGCTGGCGGGGCAGATATGCGAGGATCGTGTTGATTGTCGCCTCAAA-CCCCATG-TCGAGCAGGCGGTCCGCCTCGT-CCAGTAC-AAGCAGCTCCAGATTCTTGACCTTTGCAGCCAAATTTAGATCGCCTTTGCGTTCAAACAGATCCTGCAAGCGACCGGGTGTGGCAACGAGTATGTTGGCACCTTGCTTCAGGATCGACATCACGTCTTCCTCTACCGAGTTTCCTCCGATGAGCATTTTCTGCCGGAAGCACCTCAACTCATCGTGGGCCAGAAATTCGGACAGCACGTCGTGAA-TCTGAGTGGCTAGTTCGCGCGTGGGCGAAACGATCACGGCCCCGATTTCATGCTTCTTCCATGCCTCACTTCGCTTCCGTGGGAGCAGCAGCTCCAGCAGGGGGACGAGGAATGCTAGCGTTTTTCCTGAACCCGTCACCGCCTCTGCTGCCACGTCTTTGTAGGACAAGAGCAGGGGAATGGTGGCTCCCTGCACCGGTGTCATCTTATCGAATCCGGGCCTCTTTATCACCTCGAGCACTGGCGCACTTAGTGGGGTGGACAGCTCGGTCCATTTGCCGCTCGGTCGTGGCATCTTTACATGTGGAGCACTTTTTGAATGTTTGAGGACGGATTAAAAAATGTTGAAATTTCCCCCGTAAAATCACACAACACTCTGCGGCAGTTCCACCGG]
[+] EMBL CNS08FWP [GCCCGTTTAAGCGTCTTCTTTATTCAGAGTCATCCAAACCATCCCCATCCTTGATGCCCATTTTATCGTCGTACTCCTCTTCGGTGATTTTTTTCCTTTTCACTTTTTTCAACAATCGAATATCGTTGGCCAGCTCCTCGAGGTCTTCCTGCGAATATT TGGTCCGTTTCTTTTTGGCCGGCACTGCTTCACCCGCCTCGATGGCGGCCTTTCGTACCTGTTTCTTTTCCCTTCGCTTCTTACGGATTTCCTTCCGCTCCTCGCGTGCCTTGCTGGCCTGCTCCCAGGGTATCGTTTTCTTCCGGATCAACTTCTTCTTCCCCTTCCATTCGCCTGTTTCGGCGTACGTTTTCAGCTTCGCCTGAAATGACGCTTGCTTTTGCTTATCCTTGTACGCTAGCTTGAATACGTCCACCAACTGTTCTG ]
[+] EMBL CNS08J4P [ CGTCTTCTTTATTCAGAGTCATCCAAACCATCCCCATCCTTGATGCCCATTTTATCGTCGTACTCCTCTTCGGTGATTTTTTTCCTTTTCACCTTTTTCAACAATCGAATATCGTTGGCCAGCTCCTCGAGGTCTTCCTGCGCCCCCTCCCCGTCCGTTTCTTTTTGGCCGGCACTGCTTCACCCGCCTCGATGGCGGCCTTTCGTACCTGTTTCTTTTCCCTTCGCTTCTTACGGATTTCCTTCCGCTCCTCGCGTGCCTTGCTGGCCTGCTCCCAGGGTATCGTTTTCTTCCGGATCAACTTCTTCTTCCCCCTCCATTCGCCTGTTTCGGCGTACGTTTTCAGCTTCGCCTGAAATGACGCTTGCTTTTGCTTATCCTTGTACGCTAGCTTGAATACGTCCACCAACTGTTCTGGTCCTTGGAACGTTTCCTTGAACTGTGGCTTCATCTCGGGCATGCGGGGCAACTGCAGCAGTTCGTAGCTGGTCGCTACCTTACCGAGATCGAGATCCTTCAATCGCAGGATTAAATTGCACTCGTGCTTACTGTACGCCTGCACGTGCGACACAAACGCTCGATTCGCTTGATCGAATGTGGCGCGATCCGTCTTTTGCAGCTGATGCAGTTTGCGTAACGTTTCCGCCAATCTTGCTTCGGGAATTTCCAGTTCCACCTCCTTGAGGGCAACCTTTTGATTGCGCGTCAGAAAGTCCACGTAAGCGTCCTCGGTCGGCAGCAGCATAATTAGCGCATTACCTTCCGATCCCTGGCGTGCTGTGCGGCCTACACGATGCACAAATGCGGCCGCACTGGACGGTGGATCCCACTGTAGTACCCAGTCCACCTCGGGAATGTCGACGCCACGGGCAAG ]
[-] EMBL CNS08FWO [ CGGCCGCACTGGACGGTGGATCCCACTGTAGTACCCAGTCCACCTCGGGAATGTCGACGCCACGGGCAAGCACATCGGTACAGAGCAGCAGCGAACTGTCGGTTCGCGGAACGACTGCAGTATTCCGAAGCGTTGCGATTTCATTTTCCCGTGCAGCCCCAGTACTTGCATCGAGGGCACCAGAGCCGCCATAGCAACGGACCAATATTCAACGCAAGCGCACGTTGGTAAGAATAGCATCGCTTTCTTGATCTGTTGCGAGCTTATAAAGTCGAGCATAGCGACCATCTTCTGTTCCGGTTCGACGATCAGGTAGTAATTTTGCAGCAGCTTCGGCGTACTTGTGGTTGCCTTCATCGCGGACGCTCACCAGCA ]
[-] EMBL CNS08J4O [ CTTCTGTTCCGGTGCGACGATCAGGTAGTAATTTTGCAGCAGCTTCGGCGTACTTGTGGTTGCCTTC TCGCGGACGCTCACCAGCACGGGATTGCGTAAACCGGCGCGCATTAAATCCTTCACCTCCTTGGTTTGCGTTGCCGAAAACAGTCCCGTACGGCGCTGGCGGGGCAGATATGCGAGGATCGTGTTGATTGTCGCCTCAAA CCCCATG TCGAGCAGGCGGTCCGCCTCGT CCAGTAC AAGCAGCTCCAGATTCTTGACCTTTGCAGCCAAATTTAGATCGCCTTTGCGTTCAAACAGATCCTGCAAGCGACCGGGTGTGGCAACGAGTATGTTGGCACCTTGCTTCAGGATCGACATCACGTCTTCCTCTACCGAGTTTCCTCCGATGAGCATTTTCTGCCGGAAGCACCTCAACTCATCGTGGGCCAGAAATTCGGACAGCACGTCGTGAA TCTGAGTGGCTAGTTCGCGCGTGGGCGAAACGATCACGGCCCCGATTTCATGCTTCTTCCATGCCTCACTTCGCTTCCGTGGGAGCAGCAGCTCCAGCAGGGGGACGAGGAATGCTAGCGTTTTTCCTGAACCCGTCACCGCCTCTGCTGCCACGTCTTTGTAGGACAAGAGCAGGGGAATGGTGGCTCCCTGCACCGGTGTCATCTTATCGAATCCGGG ]
[-] EMBL BM595758 [ GCCTCAAACCCCCATGTTGGAGCAGGCGGTCCGCCTCGTCCCAGTACAAAGCAGCTCCAGATTCTTGACCTTTGCAGCCAAATTTAGATCGCCTTTGCGTTCAAACAGATCCTGCAAGCGACCGGGTGTGGCAACGAGAATGTTGGCACCTTGCTTCAGGATCGACATCACGTCTTCCTCTACCGAGTTTCCTCCGATGAGCATTTTCTGCCGGAAGCACCTCAACTCATCGTGGGCCAGAAATTCGGACAGCACGTCGTGAATTCTGAGTGGCTAGTTCGCGCGTGGGCGAAACGATCACGGCTCCGATTTCATGCTTCTTCCATGCCTCGCTTCGCTTCCGTTTGAGCAGCAGCTCCAGCAGTGGGACGAGGAATGCTAGCGTTTTTCCCGAACCCGTCACCGCCTCTGCTGCCACGTCTTTGTAGGACAAGAGCAGAGGAATGGTGGCACCCTGCACCGGTGTCATCTTATCGAACCCGAGCCTCTTTATCACCTCGAGCACTGGCGCACTTAGTGGGGTGGACAGCTCGGTCCATTTGCCGCTCGGTCGTGGCATCTTTACATGTGGAGCACTTTTTGAATGTTTGAGGACGGATTAAAAAATGTTGAAATTTCCCCCGTAAAATCACACAACACTCTGCGGCAGTTCCACCGG]
consensusID : consensus_7036#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence
[TCGCCACGAGGTANAAATTCCTTTCACTTTTTCAACAATCGAATATCGTTGGCCAGCTCCTCGAGGTCTTCCTGCGAATATTTGGTCCGTTTCTTTTTGGCCGGCACTGCTTCACCCGCCTCGATGGCGGCCTTATCGTACCTGTTTCTTTTCCCTTCGCTTCTTACGGATTTCCTTCCGCTCCTCGCGTGCCTTGCTGGCCTGCTCCCAGGGAATCGTTTTCTTCCTGATCAACTTTTTCTTCCCCTTCCATTCGCCTGTTTCGGCGTACGTTTTTAGCTTTGCCTGAAATGACGCTTGCTTTTGCTTATCCTTGTACGCTAGCTTGAATACGTCCACCAACTGTTCTGGTCCTTGGAACGTTTCCCTGAACTGTGGCTTCATCTCGGGCATGCGGGGCAGCTGCAGCAGTCCGTAGCTGGTCGCTACCTTACCGAGATCGAGATCCTTCAATCGCAGGATTAAATTGCACTCGTGCTTACTGTACGCCTGNAACGTGCGACAGNGAAACGCTCGATTCGCTTGATCGAATGTGGNGCGATCCGNACTTTTGGCAGGCCTNATGCAGTGTGCGTAACGT]
[+] EMBL BX466120 [TCGCCACGAGGTANAAATTCCTTTCACTTTTTCAACAATCGAATATCGTTGGCCAGCTCCTCGAGGTCTTCCTGCGAATATTTGGTCCGTTTCTTTTTGGCCGGCACTGCTTCACCCGCCTCGATGGCGGCCTTATCGTACCTGTTTCTTTTCCCTTCGCTTCTTACGGATTTCCTTCCGCTCCTCGCGTGCCTTGCTGGCCTGCTCCCAGGGAATCGTTTTCTTCCTGATCAACTTTTTCTTCCCCTTCCATTCGCCTGTTTCGGCGTACGTTTTTAGCTTTGCCTGAAATGACGCTTGCTTTTGCTTATCCTTGTACGCTAGCTTGAATACGTCCACCAACTGTTCTGGTCCTTGGAACGTTTCCCTGAACTGTGGCTTCATCTCGGGCATGCGGGGCAGCTGCAGCAGTCCGTAGCTGGTCGCTACCTTACCGAGATCGAGATCCTTCAATCGCAGGATTAAATTGCACTCGTGCTTACTGTACGCCTGNAACGTGCGACAGNGAAACGCTCGATTCGCTTGATCGAATGTGGNGCGATCCGNACTTTTGGCAGGCCTNATGCAGTGTGCGTAACGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7036#0 GCCCGTTTAAGCGTCTTCTTTATTCAGAGTCATCCAAACCATCCCCATCCTTGATGCCCA 60
consensus_7036#1 ------------------------------------------------------------
consensus_7036#0 TTTTATCGTCGTACTCCTCTTCGGTGATTTTTTTCCTTTTCACTTTTTTCAACAATCGAA 120
consensus_7036#1 ---------------TCGCCACGA-GGTANAAATTCCTTTCACTTTTT-CAACAATCGAA 43
* * ** * * * * *********** ***********
consensus_7036#0 TATCGTTGGCCAGCTCCTCGAGGTCTTCCTGCGAATATTTGGTCCGTTTCTTTTTGGCCG 180
consensus_7036#1 TATCGTTGGCCAGCTCCTCGAGGTCTTCCTGCGAATATTTGGTCCGTTTCTTTTTGGCCG 103
************************************************************
consensus_7036#0 GCACTGCTTCACCCGCCTCGATGGCGGCCTT-TCGTACCTGTTTCTTTTCCCTTCGCTTC 239
consensus_7036#1 GCACTGCTTCACCCGCCTCGATGGCGGCCTTATCGTACCTGTTTCTTTTCCCTTCGCTTC 163
******************************* ****************************
consensus_7036#0 TTACGGATTTCCTTCCGCTCCTCGCGTGCCTTGCTGGCCTGCTCCCAGGGTATCGTTTTC 299
consensus_7036#1 TTACGGATTTCCTTCCGCTCCTCGCGTGCCTTGCTGGCCTGCTCCCAGGGAATCGTTTTC 223
************************************************** *********
consensus_7036#0 TTCCGGATCAACTTCTTCTTCCCCTTCCATTCGCCTGTTTCGGCGTACGTTTTCAGCTTC 359
consensus_7036#1 TTCCTGATCAACTTTTTCTTCCCCTTCCATTCGCCTGTTTCGGCGTACGTTTTTAGCTTT 283
**** ********* ************************************** *****
consensus_7036#0 GCCTGAAATGACGCTTGCTTTTGCTTATCCTTGTACGCTAGCTTGAATACGTCCACCAAC 419
consensus_7036#1 GCCTGAAATGACGCTTGCTTTTGCTTATCCTTGTACGCTAGCTTGAATACGTCCACCAAC 343
************************************************************
consensus_7036#0 TGTTCTGGTCCTTGGAACGTTTCCTTGAACTGTGGCTTCATCTCGGGCATGCGGGGCAAC 479
consensus_7036#1 TGTTCTGGTCCTTGGAACGTTTCCCTGAACTGTGGCTTCATCTCGGGCATGCGGGGCAGC 403
************************ ********************************* *
consensus_7036#0 TGCAGCAGTTCGTAGCTGGTCGCTACCTTACCGAGATCGAGATCCTTCAATCGCAGGATT 539
consensus_7036#1 TGCAGCAGTCCGTAGCTGGTCGCTACCTTACCGAGATCGAGATCCTTCAATCGCAGGATT 463
********* **************************************************
consensus_7036#0 AAATTGCACTCGTGCTTACTGTACGCCTGCA-CGTGCGACACA--AACGCTCGATTCGCT 596
consensus_7036#1 AAATTGCACTCGTGCTTACTGTACGCCTGNAACGTGCGACAGNGAAACGCTCGATTCGCT 523
***************************** * ********* ***************
consensus_7036#0 TGATCGAATGTGGCGCGATCCGTCTTTT--GCAG--CTGATGCAGTTTGCGTAACGTTTC 652
consensus_7036#1 TGATCGAATGTGGNGCGATCCGNACTTTTGGCAGGCCTNATGCAGTGTGCGTAACGT--- 580
************* ******** *** **** ** ******* **********
consensus_7036#0 CGCCAATCTTGCTTCGGGAATTTCCAGTTCCACCTCCTTGAGGGCAACCTTTTGATTGCG 712
consensus_7036#1 ------------------------------------------------------------
consensus_7036#0 CGTCAGAAAGTCCACGTAAGCGTCCTCGGTCGGCAGCAGCATAATTAGCGCATTACCTTC 772
consensus_7036#1 ------------------------------------------------------------
consensus_7036#0 CGATCCCTGGCGTGCTGTGCGGCCTACACGATGCACAAATGCGGCCGCACTGGACGGTGG 832
consensus_7036#1 ------------------------------------------------------------
consensus_7036#0 ATCCCACTGTAGTACCCAGTCCACCTCGGGAATGTCGACGCCACGGGCAAGCACATCGGT 892
consensus_7036#1 ------------------------------------------------------------
consensus_7036#0 ACAGAGCAGCAGCGAACTGTCGGTTCGCGGAACGACTGCAGTATTCCGAAGCGTTGCGAT 952
consensus_7036#1 ------------------------------------------------------------
consensus_7036#0 TTCATTTTCCCGTGCAGCCCCAGTACTTGCATCGAGGGCACCAGAGCCGCCATAGCAACG 1012
consensus_7036#1 ------------------------------------------------------------
consensus_7036#0 GACCAATATTCAACGCAAGCGCACGTTGGTAAGAATAGCATCGCTTTCTTGATCTGTTGC 1072
consensus_7036#1 ------------------------------------------------------------
consensus_7036#0 GAGCTTATAAAGTCGAGCATAGCGACCATCTTCTGTTCCGGTTCGACGATCAGGTAGTAA 1132
consensus_7036#1 ------------------------------------------------------------
consensus_7036#0 TTTTGCAGCAGCTTCGGCGTACTTGTGGTTGCCTTCATCGCGGACGCTCACCAGCACGGG 1192
consensus_7036#1 ------------------------------------------------------------
consensus_7036#0 ATTGCGTAAACCGGCGCGCATTAAATCCTTCACCTCCTTGGTTTGCGTTGCCGAAAACAG 1252
consensus_7036#1 ------------------------------------------------------------
consensus_7036#0 TCCCGTACGGCGCTGGCGGGGCAGATATGCGAGGATCGTGTTGATTGTCGCCTCAAACCC 1312
consensus_7036#1 ------------------------------------------------------------
consensus_7036#0 CATGTCGAGCAGGCGGTCCGCCTCGTCCAGTACAAGCAGCTCCAGATTCTTGACCTTTGC 1372
consensus_7036#1 ------------------------------------------------------------
consensus_7036#0 AGCCAAATTTAGATCGCCTTTGCGTTCAAACAGATCCTGCAAGCGACCGGGTGTGGCAAC 1432
consensus_7036#1 ------------------------------------------------------------
consensus_7036#0 GAGTATGTTGGCACCTTGCTTCAGGATCGACATCACGTCTTCCTCTACCGAGTTTCCTCC 1492
consensus_7036#1 ------------------------------------------------------------
consensus_7036#0 GATGAGCATTTTCTGCCGGAAGCACCTCAACTCATCGTGGGCCAGAAATTCGGACAGCAC 1552
consensus_7036#1 ------------------------------------------------------------
consensus_7036#0 GTCGTGAATCTGAGTGGCTAGTTCGCGCGTGGGCGAAACGATCACGGCCCCGATTTCATG 1612
consensus_7036#1 ------------------------------------------------------------
consensus_7036#0 CTTCTTCCATGCCTCACTTCGCTTCCGTGGGAGCAGCAGCTCCAGCAGGGGGACGAGGAA 1672
consensus_7036#1 ------------------------------------------------------------
consensus_7036#0 TGCTAGCGTTTTTCCTGAACCCGTCACCGCCTCTGCTGCCACGTCTTTGTAGGACAAGAG 1732
consensus_7036#1 ------------------------------------------------------------
consensus_7036#0 CAGGGGAATGGTGGCTCCCTGCACCGGTGTCATCTTATCGAATCCGGGCCTCTTTATCAC 1792
consensus_7036#1 ------------------------------------------------------------
consensus_7036#0 CTCGAGCACTGGCGCACTTAGTGGGGTGGACAGCTCGGTCCATTTGCCGCTCGGTCGTGG 1852
consensus_7036#1 ------------------------------------------------------------
consensus_7036#0 CATCTTTACATGTGGAGCACTTTTTGAATGTTTGAGGACGGATTAAAAAATGTTGAAATT 1912
consensus_7036#1 ------------------------------------------------------------
consensus_7036#0 TCCCCCGTAAAATCACACAACACTCTGCGGCAGTTCCACCGG 1954
consensus_7036#1 ------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||