|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7044#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1364 fasta sequence
[CAGATTCGGCACGATGGCATGTTTTATCTCAATTTGGTTTCCGCTTTGCTTGTGGCAGCAACTAGATGAAGCTTCACGAGCAAATGCTAGGCGTTTAGAAATAACCCGTGTGATGAAAGGGAGAAGAATTATCTCTCTCTCTCTCTCGTAAGATCAACCTACAAAAAAGACGTACCATCACCAATTGGCACAGAAACAAGTGCTCTTTTGCCCGTACACAACGTAGGAAAACGCTCAAAGCAGGAGAAAGTAACGAGAAGGATAACA-ACAGAA-AAAAGCAACAGAGAACAGTTTGCTATAAAGGAGACATCTGAAGAAGAGGAAAGTGTGAGAACAGATTTAAGACATGTCGAAC-T-TTTATGTGCCACCTGTATCGAGATACACACGTTTACGGTGTGTTT-GTAAGTCTGAGTGCTTGGGGCCATCTTCCACTGAATGTGCC-GTCTTTTC-TTTGGTAAATCAA-C-TCAAAAGCCTTGGTCCATATCCTTACTCGTGTGACCCAAATTTGCCTCTCCTGCGGTGTTTTTCCCTACCTTGTGTCTGGGTGGATCTCCTGTGCGTGTCAGGACGCCTGTTTCTGTTGCATCTGTAACATCTGTTTTGCACTATTTAAATTCGCAAACTGCTGATCACACATCCCTCCACCACGGTTTGTGCAACGAATGTATGGTATGGTATGGTGTCCTACATTTGGGCAACAACCCGTGCACTCTAGGGAAAGTGGGCACGGAACGAACGTTGAAAAGACACGGGTACCGAGAGGGAAATGTAGGGGCAAGGGGTTACATATACACACTTACACATCGTACACGTTAAGCTGTTATAGTGTTGTAAAATAATTATTAAACGCAAACATTGATACATTTCTTCATTCAGTTACCATGCCGCTTGACAGTAAGAAGCTAATGATGCTCCTAGCGGGGGAGAAGGGTAGGCAAATTGTTAGTGTAGGAGTCCTTACGANGGGTTTAAAGTTTTTTTTGTTCTTCTTCTTCTTCTTCTTCTTCTTATTGGGGTGGTAGTATNCGATACAGCTCCAGCACATCGACACATAAGATTTCTAGTTACAAAACCCCTTGTATGTAGTGGTCAAACAGTCAAACGCCTGTGATGCGTGGCACACATGGCACACATAANACGTAAACGTAATATTACAACTGCATACAACCTTCCCCACAGTCTCCCACACCTTTCCTACCCCATTATATGTGCATGCATACACTCGTAACCCATCTACTACTATCTACTACTGTGTTATGTTTTATTCAAAGTTTATCTATATTTATAGTGCAAATGAAAGCGGCAAACACGATGGGNTTTAGGGGCCTACCGATTAACCATTACNCAAACAAAACAGGAAGACC]
[+] EMBL BX468152 [CAGATTCGGCACGATGGCATGTTTTATCTCAATTTGGTTTCCGCTTTGCTTGTGGCAGCAACTAGATGAAGCTTCACGAGCAAATGCTAGGCGTTTAGAAATAACCCGTGTGATGAAAGGGAGAAGAATTATCTCTCTCTCTCTCTCGTAAGATCAACCTACAAAAAAGACGTACCATCACCAATTGGGACAGAAACAAGTGCTCTTTTGCCCGTACACCACGTA GAAAACGCTCAAAGCA GAGAAAGTAACGAGAAGGATAACACACAGAA AAAAGCAACAGAGAACAGTTTGCTATAAAGGAGACATCTGAAGAAGAGGAAAGTGTGAGAACAGATTTNAGACATGTCGAACGTCTTTATGTGCCACCTGTATCGAGATACACACGTTTACGGTGTGTTTAGTAAGTCTGAGTGCTTGGGGCCATCTTCCACTGAATGTGCCGGTCTTTTCTTTTGGTAAATCAAGCGTCAAAAGCCTTGGTCC ]
[+] EMBL BX627053 [ ATCAACCTACAAAAAAGACGTACCATCACCAATTGGCACAGAAACAAGTGCTCTTTTGCCCGTACACAACGTAGGAAAACGCTCAAAGCAGGAGAAAGTAACGAGAAGGATAACA ACAGAA AAAAGCAACAGAGAACAGTTTGCTATAAAGGAGACATCTGAAGAAGAGGAAAGTGTGAGAACAGATTTAAGACATGTCGAAC T TTTATGTGCCACCTGTATCGAGATACACACGTTTACGGTGTGTTT GTAAGTCTGAGTGCTTGGGGCCATCTTCCACTGAATGTGCC GTCTTTTC TTTGGTAAATCAA C TCAAAAGCCTTGCTCCATATCCTTACTCGTGTGACCCAAATTTGCCTCTCCTGCGGTGTTTTTCCCTACCTTGTGTCTGGGTGGATCTCCTGTGCGTGTCAGGACGCCTGTTTCTGTTGCATCTGTAACATCTGTTTTGCACTATTTAAATTCGCAAACTGCTGATCACACATCCCTCCACCACGGTTTGTGCAACGAATGTATGGTATGGTATGGTGTCCTACATTTGGGCAACAACCCGTGCACTCTAGGGAAAGTGGGCACGGAACGAACGTTGAAAAGACACGGGTACCGAGAGGGAAATGTAGGGGCAAGGGGTTACATATACACACTTACACATCGTACACGTTAAGCTGTTATAGTGTTGTAAAATAATTATTAAACGCAAACATTGATACATTTCTTCATTCAGTTACCATGCCGCTTGACAGTAAGAAGCTAATGATG ]
[+] EMBL BX603078 [ AACCTACAAAAAAGACGTACCATCACCAATTGGCACAGAAACTAGTGCTCTTTTGCCCGTACACAAAGTAGGAAAACGCTCAAAGCAGGAGAAAGCAACGAGAAGGATAACA ACAGAAGAAAAGCAACAGAGAACAGTTTGCTATAAAGGAGACATCTGGAGAAGAGGAAAGTGTGAGAACCGATTTAAGACATGTCGAAC T ATTATGTGCCACCTATATCGAGATACACACGTTTACGGTGTGTTT GTAAGTCTGAGTGCTTGGGGCCATCTTCC ]
[+] EMBL BX621167 [ TCCTGTGCGTGTCNGGACGCCTGTTTCTGTTGCATCTGTAACATCTGTTTTGCACTATTTAAATTCGCAAACTGCTGATCACACATCCCGCCGCCACGGTTTGTGCAACGAATG TGGTATGGTATGGTGTCCTACATTTGGGCAACAGCCCGTGCACTCTAGGGAAAGTGGGCACGGAACGAACGTTGAAAAGACACGNGTACCGAGAGGGAAATGTAGGGGCAAGGGGTTACATATACACACTTACACATCGTACACGTTAAGCCGTTATAGTGTTGTAAAATAATTATTAAACGCAAACATTGATACATTTCTTCATTCAGTTACCATGCCGCTTGACAGTAAGAAGCTAATGATGCTCCTAGCGGGGGAGAAGGGTAGGCAAATTGTTAGTGTAGGAGTCCTTACGANGGGTTTAAAGTTTTTTTTGTTCTTCTTCTTCTTCTTCTTCTTCTTATTGGGGTGGTAGTATNCGATACAGCTCCAGCACATCGACACATAAGATTTCTAGTTACAAAACCCCTTGTATGTAGTGGTCAAACAGTCAAACGCCTGTGATGCGTGGCACACATGGCACACATAANACGTAAACGTAATATTACAACTGCATACAACCTTCCCCACAGTCTCCCACACCTTTCCTACCCCATTATATGTGCATGCATACACTCGTAACCCATCTACTACTATCTACTACTGTGTTATGTTTTATTCAAAGTTTATCTATATTTATAGTGCAAATGAAAGCGGCAAACACGATGGGNTTTAGGGGCCTACCGATTAACCATTACNCAAACAAAACAGGAAGACC]
consensusID : consensus_7044#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 761 fasta sequence
[AGGCAGAATCGGCACGAGGAGGAATTATGCGGAAAATTTGACAGTTGCGAGAAGGGTAGGCAAATTGTTAGTGTAGTGAATCCTTACCACGGGTTTACAGTTTTTTTGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTATTGGGGTGGTAGTATTCGATACAGCTCCAGCACATCGACACATAAGATTTCTAGTTACAAAACCCCTTGTATGTAGGTGGTCAAACAGTCAAACGCCTGTGATGCGTGGCACACATGGCACACATAAACGTAAACGTAATATTACAACTGCATACAACCTTCCCCACAGTCTCCCACACCTTTCCTACCCCATTATATGTGCATGCATACACTCGTAACCCATCTACTACTATCTACTACTGTGTTATGTTTTATTCAAAGTTTATCTATATTTATAGTGCAAATGANAGCGGCAAACACGATGGGTTTTAGGGCCCTATCGATTAACCATTACACAAAACAAAACAGGAAGACCCTAAAAGCAAATAAGCGGGAAGGTAAAAGTAAGCGAAAGTTTCAAAAAGAAACAGACAGGAAAAAAACAGCGTGGCAAGATAACGAAGAAACTAGCAAGAGATAACAGATAGAACAGGAAGGGCAGGTCGCGGGGCGGAAGTTAAGAACGACTTCAAGTCAAGACTTGAAATTGGGATTGACAGTGAACAGTTANAGGCGCTGTATTANGGGTGTTTGGCAAAAACGTGACGGCGTGGACTGTATAACATTCAAAGCCAGGNACGCCC]
[+] EMBL BX468450 [AGGCAGAATCGGCACGAGGAGGAATTATGCGGAAAATTTGACAGTTGCGAGAAGGGTAGGCAAATTGTTAGTGTAGTGAATCCTTACCACGGGTTTACAGTTTTTTTGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTATTGGGGTGGTAGTATTCGATACAGCTCCAGCACATCGACACATAAGATTTCTAGTTACAAAACCCCTTGTATGTAGGTGGTCAAACAGTCAAACGCCTGTGATGCGTGGCACACATGGCACACATAAACGTAAACGTAATATTACAACTGCATACAACCTTCCCCACAGTCTCCCACACCTTTCCTACCCCATTATATGTGCATGCATACACTCGTAACCCATCTACTACTATCTACTACTGTGTTATGTTTTATTCAAAGTTTATCTATATTTATAGTGCAAATGANAGCGGCAAACACGATGGGTTTTAGGGCCCTATCGATTAACCATTACACAAAACAAAACAGGAAGACCCTAAAAGCAAATAAGCGGGAAGGTAAAAGTAAGCGAAAGTTTCAAAAAGAAACAGACAGGAAAAAAACAGCGTGGCAAGATAACGAAGAAACTAGCAAGAGATAACAGATAGAACAGGAAGGGCAGGTCGCGGGGCGGAAGTTAAGAACGACTTCAAGTCAAGACTTGAAATTGGGATTGACAGTGAACAGTTANAGGCGCTGTATTANGGGTGTTTGGCAAAAACGTGACGGCGTGGACTGTATAACATTCAAAGCCAGGNACGCCC]
consensusID : consensus_7044#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 478 fasta sequence
[GATCGCCCGAGGTTGCACGGAACGAACGTTGAAAAGACACGGGTACGAGAGGGAAATGTAGGGGCAGGGTTACATATACACACTTACACATCGTACACGTTAAGCTGTTATAGTGTTGTAAAATAATTATTAAACGCAAACATTGATACATTTCTTCATTCAGTTACCATGACCGCTTGACAGTAAGAAGCTAATGATGCTCCTGGCGGGGGAGAAGGGTAGGCNAATTGTTAGTGTAGTGAATCCTTACCACGGGTTTACAGTTTTTTGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTATTGGGGTGGTAGTATTCGATACAGCTCCAGCACATCGACACATAAGATTTCTAGTTACAAAACCCCTTGTATGTAGTGGTCAAACAGTCAAACGCCTGTGATGCGTGGCACACATGGCACACATAAACGTAAACGTAATATTACAACTGCATACAACCTTCCCCACAGTCTCCCACAC]
[+] EMBL AL930636 [GATCGCCCGAGGTTGCACGGAACGAACGTTGAAAAGACACGGGTACGAGAGGGAAATGTAGGGGCAGGGTTACATATACACACTTACACATCGTACACGTTAAGCTGTTATAGTGTTGTAAAATAATTATTAAACGCAAACATTGATACATTTCTTCATTCAGTTACCATGACCGCTTGACAGTAAGAAGCTAATGATGCTCCTGGCGGGGGAGAAGGGTAGGCNAATTGTTAGTGTAGTGAATCCTTACCACGGGTTTACAGTTTTTTGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTATTGGGGTGGTAGTATTCGATACAGCTCCAGCACATCGACACATAAGATTTCTAGTTACAAAACCCCTTGTATGTAGTGGTCAAACAGTCAAACGCCTGTGATGCGTGGCACACATGGCACACATAAACGTAAACGTAATATTACAACTGCATACAACCTTCCCCACAGTCTCCCACAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7044#0 CAGATTCGGCACGATGGCATGTTTTATCTCAATTTGGTTTCCGCTTTGCTTGTGGCAGCA 60
consensus_7044#2 ------------------------------------------------------------
consensus_7044#1 ------------------------------------------------------------
consensus_7044#0 ACTAGATGAAGCTTCACGAGCAAATGCTAGGCGTTTAGAAATAACCCGTGTGATGAAAGG 120
consensus_7044#2 ------------------------------------------------------------
consensus_7044#1 ------------------------------------------------------------
consensus_7044#0 GAGAAGAATTATCTCTCTCTCTCTCTCGTAAGATCAACCTACAAAAAAGACGTACCATCA 180
consensus_7044#2 ------------------------------------------------------------
consensus_7044#1 ------------------------------------------------------------
consensus_7044#0 CCAATTGGCACAGAAACAAGTGCTCTTTTGCCCGTACACAACGTAGGAAAACGCTCAAAG 240
consensus_7044#2 ------------------------------------------------------------
consensus_7044#1 ------------------------------------------------------------
consensus_7044#0 CAGGAGAAAGTAACGAGAAGGATAACAACAGAAAAAAGCAACAGAGAACAGTTTGCTATA 300
consensus_7044#2 ------------------------------------------------------------
consensus_7044#1 ------------------------------------------------------------
consensus_7044#0 AAGGAGACATCTGAAGAAGAGGAAAGTGTGAGAACAGATTTAAGACATGTCGAACTTTTA 360
consensus_7044#2 ------------------------------------------------------------
consensus_7044#1 ------------------------------------------------------------
consensus_7044#0 TGTGCCACCTGTATCGAGATACACACGTTTACGGTGTGTTTGTAAGTCTGAGTGCTTGGG 420
consensus_7044#2 ------------------------------------------------------------
consensus_7044#1 ------------------------------------------------------------
consensus_7044#0 GCCATCTTCCACTGAATGTGCCGTCTTTTCTTTGGTAAATCAACTCAAAAGCCTTGGTCC 480
consensus_7044#2 ------------------------------------------------------------
consensus_7044#1 ------------------------------------------------------------
consensus_7044#0 ATATCCTTACTCGTGTGACCCAAATTTGCCTCTCCTGCGGTGTTTTTCCCTACCTTGTGT 540
consensus_7044#2 ------------------------------------------------------------
consensus_7044#1 ------------------------------------------------------------
consensus_7044#0 CTGGGTGGATCTCCTGTGCGTGTCAGGACGCCTGTTTCTGTTGCATCTGTAACATCTGTT 600
consensus_7044#2 ------------------------------------------------------------
consensus_7044#1 ------------------------------------------------------------
consensus_7044#0 TTGCACTATTTAAATTCGCAAACTGCTGATCACACATCCCTCCACCACGGTTTGTGCAAC 660
consensus_7044#2 ------------------------------------------------------------
consensus_7044#1 ------------------------------------------------------------
consensus_7044#0 GAATGTATGGTATGGTATGGTGTCCTACATTTGGGCAACAACCCGTGCACTCTAGGGAAA 720
consensus_7044#2 --------------------------------------------------GATCGCCCGA 10
consensus_7044#1 ------------------------------------------------------------
consensus_7044#0 GTGGGCACGGAACGAACGTTGAAAAGACACGGGTACCGAGAGGGAAATGTAGGGGCAAGG 780
consensus_7044#2 GGTTGCACGGAACGAACGTTGAAAAGACACGGGTAC-GAGAGGGAAATGTAGGGGCA--G 67
consensus_7044#1 ------------------------------------------------------------
consensus_7044#0 GGTTACATATACACACTTACACATCGTACACGTTAAGCTGTTATAGTGTTGTAAAATAAT 840
consensus_7044#2 GGTTACATATACACACTTACACATCGTACACGTTAAGCTGTTATAGTGTTGTAAAATAAT 127
consensus_7044#1 ------------------------------------------------------------
consensus_7044#0 TATTAAACGCAAACATTGATACATTTCTTCATTCAGTTACCATG-CCGCTTGACAGTAAG 899
consensus_7044#2 TATTAAACGCAAACATTGATACATTTCTTCATTCAGTTACCATGACCGCTTGACAGTAAG 187
consensus_7044#1 ----------------------------------AGGCAGAATCGGCACGAGGAGGAATT 26
** * ** * * * * *
consensus_7044#0 AAGCTAATGATGCTCCTAGCGGGGGAGAAGGGTAGGCAAATTGTTAGTGTAG-GAGTCCT 958
consensus_7044#2 AAGCTAATGATGCTCCTGGCGGGGGAGAAGGGTAGGCNAATTGTTAGTGTAGTGAATCCT 247
consensus_7044#1 ATGCGGAAAATTTGACAGTTGCG--AGAAGGGTAGGCAAATTGTTAGTGTAGTGAATCCT 84
* ** * ** * * * ************ ************** ** ****
consensus_7044#0 TACGANGGGTTTAAAGTTTTTT--TTGTTCTTCTTCTTCTTCTTCTTCTTCTTATTGGGG 1016
consensus_7044#2 TACCACGGGTTTACAGTTTTTTG-TTCTTCTTCTTCTTCTTCTTCTTCTTCTTATTGGGG 306
consensus_7044#1 TACCACGGGTTTACAGTTTTTTTGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTATTGGGG 144
*** * ******* ******** ** *********************************
consensus_7044#0 TGGTAGTATNCGATACAGCTCCAGCACATCGACACATAAGATTTCTAGTTACAAAACCCC 1076
consensus_7044#2 TGGTAGTATTCGATACAGCTCCAGCACATCGACACATAAGATTTCTAGTTACAAAACCCC 366
consensus_7044#1 TGGTAGTATTCGATACAGCTCCAGCACATCGACACATAAGATTTCTAGTTACAAAACCCC 204
********* **************************************************
consensus_7044#0 TTGTATGTAG-TGGTCAAACAGTCAAACGCCTGTGATGCGTGGCACACATGGCACACATA 1135
consensus_7044#2 TTGTATGTAG-TGGTCAAACAGTCAAACGCCTGTGATGCGTGGCACACATGGCACACATA 425
consensus_7044#1 TTGTATGTAGGTGGTCAAACAGTCAAACGCCTGTGATGCGTGGCACACATGGCACACATA 264
********** *************************************************
consensus_7044#0 ANACGTAAACGTAATATTACAACTGCATACAACCTTCCCCACAGTCTCCCACACCTTTCC 1195
consensus_7044#2 AA-CGTAAACGTAATATTACAACTGCATACAACCTTCCCCACAGTCTCCCACAC------ 478
consensus_7044#1 AA-CGTAAACGTAATATTACAACTGCATACAACCTTCCCCACAGTCTCCCACACCTTTCC 323
* ***************************************************
consensus_7044#0 TACCCCATTATATGTGCATGCATACACTCGTAACCCATCTACTACTATCTACTACTGTGT 1255
consensus_7044#2 ------------------------------------------------------------
consensus_7044#1 TACCCCATTATATGTGCATGCATACACTCGTAACCCATCTACTACTATCTACTACTGTGT 383
consensus_7044#0 TATGTTTTATTCAAAGTTTATCTATATTTATAGTGCAAATGAAAGCGGCAAACACGATGG 1315
consensus_7044#2 ------------------------------------------------------------
consensus_7044#1 TATGTTTTATTCAAAGTTTATCTATATTTATAGTGCAAATGANAGCGGCAAACACGATGG 443
consensus_7044#0 GNTTTAGGGGCCTACCGATTAACCATTACNCAAA-CAAAACAGGAAGACC---------- 1364
consensus_7044#2 ------------------------------------------------------------
consensus_7044#1 GTTTTAGGGCCCTATCGATTAACCATTACACAAAACAAAACAGGAAGACCCTAAAAGCAA 503
consensus_7044#0 ------------------------------------------------------------
consensus_7044#2 ------------------------------------------------------------
consensus_7044#1 ATAAGCGGGAAGGTAAAAGTAAGCGAAAGTTTCAAAAAGAAACAGACAGGAAAAAAACAG 563
consensus_7044#0 ------------------------------------------------------------
consensus_7044#2 ------------------------------------------------------------
consensus_7044#1 CGTGGCAAGATAACGAAGAAACTAGCAAGAGATAACAGATAGAACAGGAAGGGCAGGTCG 623
consensus_7044#0 ------------------------------------------------------------
consensus_7044#2 ------------------------------------------------------------
consensus_7044#1 CGGGGCGGAAGTTAAGAACGACTTCAAGTCAAGACTTGAAATTGGGATTGACAGTGAACA 683
consensus_7044#0 ------------------------------------------------------------
consensus_7044#2 ------------------------------------------------------------
consensus_7044#1 GTTANAGGCGCTGTATTANGGGTGTTTGGCAAAAACGTGACGGCGTGGACTGTATAACAT 743
consensus_7044#0 ------------------
consensus_7044#2 ------------------
consensus_7044#1 TCAAAGCCAGGNACGCCC 761
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||