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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7079#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1516 fasta sequence
[CGTCGTCGTCGTTATTCGAATCGATTTTTAACTCAGGGCGCAGCCATCTTACGGTGGTGCCTGCAGCAGAGAAGAGTGTGCTCACGTCACCGTTCGAAAGTGCAAAAGTGTTTCGAGTTTAGTAGTAAAAGGTGGTGTGGTAGTGCCCAACGCTGCTCTCACAGCGCTTTTGTAACAACATCGTCAGCCCTATTCTGCGCCAGCGGTAGCAGTGAGTGTGTTGTGAGGTGAATTCGTTCGAATAGCGAACAGTTTTGTGGCAGAATAAATAGTGTTGCACTGTGTGGAAAATCACGAATATGAAGGCCATCACGACCATGTGTGCGAAGAATGGTGGTGGTGCATCGCTGCCGGCGATTGCGACGGGTCGAGTGCAGCGCCACCGAGATGGTGAAAACGATGAAATCAAGCTGTATCTGTCGAAGCTGCGGGAGCTGGTTCCGTTCATGCCGAAAAACCGCAAACTGTCCAAGCTCGAGGTTATCCAAAACGTTATTGACTACATCTGCGAGCTGCAAAATGCACTCGATTCGCATCCCGCGGTCAACAGCTTCGACTCGTTGGCGGTGCTCCAGCAGCATCAGCAACAACAGCAAGTTGGATACATGGTGGAATCAATCGATACTGTACCGGCGCATCCAGCAGCAGCAGCATCCAGGCAACCACTGGCGACCATCTTGAGCAGTGGGAGCAATGTTGCCGCCTCTAATATTAACGCTATTGGCGAGGGACTACAACATCCTTGATGGCAAACGGCAGCCGTCACTCGATTGCCCGTGGTACATCGCCAAGGGGTGAATTGCGCTCTTGCAGGGCAGCGCTCCGCCGCACGAACCTGTTCCAAACCATTGGCTTACAACATCTGTGATATTCCGTCGATACTGAGTC-GCACGAGGAAGCCTCAACAGGCAGCATCGATGGGAGGACGTCGACTAAGCGCGATTGAAGGTTCTTCCTCCTTCTTCTCCTCGTCCTCGTCGAACTGAACGGGACTGAAACGAAAAGAGCGGTGTAGGAGCCCTTCGGAACCCTTCGGAAGTTGGTGGGCCTTGTCCAATTGAACACAACTTTCCAACACCAACGGCTGTACCGCCAACCGGGGAAAGGTCGTCGGAGTCTTGCCAAGGTTCCA-GGGAGAGCCCTCGACTCCAGCCAGAGATGATCTCAGGATGTATTAGGATGCTCCACCGGTGCCAGAGTG-TTGGGCCGTGCTGTGCCCCGTACAGCGGCACCATTTATGGGGCCAGGCGGCCAACCAG-CGCAGCAGAACGGAGTGCTCTGTACGTGTGTGT-GTGTGTGTCTGTGTGTGTGTGGCTGTGCGTGTGTTCACCGTTACAGCAGTGTTTGCAACTGTCTCGGTGCCATTGCAGCAGCAGAACTCCTCGCTTTCGGAGCGCTCAATTCTGGTTGATGAATTTCATATTAACAACATAAATACCGTAATTAACACTAGCTGACCAAGGTTCTACACATGTTGTCAACACTGATCCCATTTGAACGATCCGGCGCCATTATC]
[+] EMBL BX604633 [CGTCGTCGTCGTTATTCGAATCGATTTTTAACTCAGGGCGCAGCCATCTTACGGTGGTGCCTGCAGCAGAGAAGAGTGTGCTCACGTCACCGTTCGAAAGTGCAAAAGTGTTTCGAGTTTAGTAGTAAAAGGTGGTGTGGTAGTGCCCAACGCTGCTCTCACAGCGCTTTTGTAACAACATCGTCAGCCCTATTCTGCGCCAGCGGTAGCAGTGAGTGTGTTGTGAGGTGAATTCGTTCGAATAGCGAACAGTTTTGTGGCAGAATAAATAGTGTTGCACTGTGTGGAAAATCACGAATATGAAGGCCATCACGACCATGTGTGCGAAGAATGGTGGTGGTGCATCGCTGCCGGCGATTGCGACGGGTCGAGTGCAGCGCCACCGAGATGGTGAAAACGATGAAATCAAGCTGTATCTGTCGAAGCTGCGGGAGCTGGTTCCGTTCATGCCGAAAAACCGCAAACTGTCCAAGCTCGAGGTTATCCAAAACGTTATTGACTACATCTGCGAGCTGCAAAATGCACTCGATTCGCATCCCGCGGTCAACAGCTTCGACTCGTTGGCGGTGCTCCAGCAGCATCAGCAACAACAGCAAGTTGGATACATGGTGGAATCAATCGATACTGTACCGGCGCATCCAGCAGCAGCAGCATCCAGGCAACCACTGGCGACCATCTTGAGCAGTGGGAGCAATGTTGCCGCCTCTAATATTAACGCTATTGGCGAGGGAC ]
[+] EMBL BX618130 [ CGGTCAACAGCTTCGACTCGTTGGCGGTGCTCCAGCAGCATCAGCAACAACAGCAAGTTGGAAACATGGTGGAATCAATCGATACTGTACCGGCGCATCCAGCAGCAGCAGCATCCAGGCAACCACTGGCGACCATCTTGAGCAGTGGGAGCAATGTTGCCGCCTCTAATATTAACGCTATTGGCGAGGGACTACAACATCCTTGATGGCAAACGGCAGCCGTCACTCGATTGCCCGTGGTACATCGCCAAGGGGTGAATTGCGCTCTTGCAGGGCAGCGCTCCGCCGCACGAACCTGTTCCAAACCATTGGCTTACAACATCTGTG ]
[+] EMBL BX609193 [ TTGGCGGTGCTCCAGCAGCATCAGCAACAACAGCAAGTTGGATACATGGTGGAATCAATCGATACTGTACCGGCGCATCCAGCAGCAGCAGCATCCAGGCAACCACTGGCGACCATCTTGAGCAGTGGGAGCAATGTTGCCGCCTCTAATATTAACGCTATTGGCGAGGGACTACAACAGCCTTGATGGCAAACGGCAGCTGTCACTCGATTGCCCGTGGTACATCGCCAAGGGGTGATTTGCGCTCTTGCAGGGTAGCGCTCCGCCGCACGAACCTGTTCCAAACCATTGGCTTACAACATCTGTGATATTCCGTCGATACTGAGTC GCACGAGGAAGCCTCAACAGGCAGCATCGATGGGAGGACGTCGACTAAGCGCGATTGAAGGTTCTTCCTCCTTCTTCTCCTCGTCCTCGTCGAACTGAACGGGACTGAAACGAAAAGAGCGGTGTAGGAGCCCTTCGGAACCCTTCGGAAGTTGGTGGGCCTTGTCCAATTGAACACAACTTTCCAACACCAACGTCTGTACCGCCAACCGGGGAAAGGTCGTCGGAGTCTTGCCAAGGTTCCA GGGAGAGCCCTCGACTCCAGCCAGAGATGATCTCAGGATGTATTAGGATGCTCCACCGGTGCCAGAGTG TTGGGCCGTGCTGTGCCCCGTACAGCGGCACCATTTATGGGGCCAGGCGGCCAACCAG CGCAGCAGAACGGAGTGCTCTGTACGTGTGTGT GTGTGTGTCTGTGTGTGTGTGGCTG ]
[+] EMBL AL931678 [ CCG AGGTAACTG TCCAAACCATTGGCTTACAACATCTGTGATATTCCGTCGATACTGAGTCTGCACGAGGAAGCCTCAACAGGCAGCATCGATGGGAGGACGTCGACTAAGCGCGATTGAAGGTTCTTCCTCCTTCTTCTCCTCGTCCTCGTCGAACTGAACGGGACTGAAACGAAAAGAGCGGTGTAGGAGCCCTTCGGAACCCTTCGGAAGTTGGTGGGCCTTGTCCAATTGAACACAACTTTCCAACACCAACGGCTGTACCGCCAACCGGGGAAAGGTCGTCGGAGTCTTGCCAAGGTTCCAGGGGAGAGCCCTCGACTCCAGCCAGAGATGATCTCAGGATGTATTAGGATGCTCCACCGGTGCCAGAGTGTTTGGGCCGTGCTGTGCCCCGTACAGCGG ACCATTTATGGGGCCAGGCGG CAACCAGNCGCAGCAGAACGGAGTGCTCTGTACGTGTGTGTAGTGTGTGTCTGTGTGTGTGTGGCTGTGCGTGTGTTCACCGTTACAGCAGTGTTTGCAACTGTCTCGGTGCCATTGCAGCAGCAGAACTCCTCGCTTTCGGAGCGCTCAATTCTGGTTGATGAATTTCATATTAACAACATAAATACCGTAATTAACACTAGCTGACCAAGGTTCTACACATGTTGTCAACACTGATCCCATTTGAACGATCCGGCGCCATTATC]
[+] EMBL BX610139 [ CGAACGGAACGGGACTGAAACGAAAAGAGCGGTGTAGGAGCCCTTCGGAACCCTTCGGAAGTTGGGGGGCCTTGTCCAATTGAACACAACTTTCCAACACCAACGGCGGTACCGCCAACCGGGGAAAGGGCGTCGG ]
consensusID : consensus_7079#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 704 fasta sequence
[CCGCTCCGGGACGCACGCACGCACGCGAGCTTACCACGTCCATCCGTCCGCCGCCGTCGTCGTCGTTATTCGAATCGATTTTTAACTCAGGGCGCAGCCATCTTACGGTGGTGCCTGCAGCAGAGAAGAGTGTGCTCACGTCACCGTTCGAAAGTGCAAAAGTGTTTCGAGTTTAGTAGTAAAAGGTGGTGTGGTAGTGCCCAACGCTGCTCTCATAGCGCTTTTGTAACAACATCGTCAGCCCTATTCAGCGCCAGCGGTAGCAGTGAGTGTGTTGTGAGGTGAATTCGTTCGAACAGCGAACAGTTTTGTGTTAAACAGAATAAATAGTGTTGCACTGTGTGGAAAATCACGAATATGAAGGCCATCACGACCATGTGTGCGAAGAATGGTGGTGGTGCATCGCTGCCGGCGATTGCGACGGGTCGAGTGCAGCGCCACCGAGATGGTGAAAACGATGAAATCAAGCTGTATCTGTCGAAGCTGCGAGAGCTGGTTCCGTTCATGCCGAAAAACCGCAAACTGTCCAAGCTCGAGGTTATCCAAAACGTTATCGACTACATCTGCGAGCTGCAAAATGCACTCGATTCGCATCCCGCGGTCAACAGCTTCGACTCGTTGGCGGTGCTCCAGCAGCATCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAGCAAGTTGGGATACATGGTGGAATCAATCGATA]
[+] EMBL BM614355 [CCGCTCCGGGACGCACGCACGCACGCGAGCTTACCACGTCCATCCGTCCGCCGCCGTCGTCGTCGTTATTCGAATCGATTTTTAACTCAGGGCGCAGCCATCTTACGGTGGTGCCTGCAGCAGAGAAGAGTGTGCTCACGTCACCGTTCGAAAGTGCAAAAGTGTTTCGAGTTTAGTAGTAAAAGGTGGTGTGGTAGTGCCCAACGCTGCTCTCATAGCGCTTTTGTAACAACATCGTCAGCCCTATTCAGCGCCAGCGGTAGCAGTGAGTGTGTTGTGAGGTGAATTCGTTCGAACAGCGAACAGTTTTGTGTTAAACAGAATAAATAGTGTTGCACTGTGTGGAAAATCACGAATATGAAGGCCATCACGACCATGTGTGCGAAGAATGGTGGTGGTGCATCGCTGCCGGCGATTGCGACGGGTCGAGTGCAGCGCCACCGAGATGGTGAAAACGATGAAATCAAGCTGTATCTGTCGAAGCTGCGAGAGCTGGTTCCGTTCATGCCGAAAAACCGCAAACTGTCCAAGCTCGAGGTTATCCAAAACGTTATCGACTACATCTGCGAGCTGCAAAATGCACTCGATTCGCATCCCGCGGTCAACAGCTTCGACTCGTTGGCGGTGCTCCAGCAGCATCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAGCAAGTTGGGATACATGGTGGAATCAATCGATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7079#0 ------------------------------------------------------CGTCGT 6
consensus_7079#1 CCGCTCCGGGACGCACGCACGCACGCGAGCTTACCACGTCCATCCGTCCGCCGCCGTCGT 60
******
consensus_7079#0 CGTCGTTATTCGAATCGATTTTTAACTCAGGGCGCAGCCATCTTACGGTGGTGCCTGCAG 66
consensus_7079#1 CGTCGTTATTCGAATCGATTTTTAACTCAGGGCGCAGCCATCTTACGGTGGTGCCTGCAG 120
************************************************************
consensus_7079#0 CAGAGAAGAGTGTGCTCACGTCACCGTTCGAAAGTGCAAAAGTGTTTCGAGTTTAGTAGT 126
consensus_7079#1 CAGAGAAGAGTGTGCTCACGTCACCGTTCGAAAGTGCAAAAGTGTTTCGAGTTTAGTAGT 180
************************************************************
consensus_7079#0 AAAAGGTGGTGTGGTAGTGCCCAACGCTGCTCTCACAGCGCTTTTGTAACAACATCGTCA 186
consensus_7079#1 AAAAGGTGGTGTGGTAGTGCCCAACGCTGCTCTCATAGCGCTTTTGTAACAACATCGTCA 240
*********************************** ************************
consensus_7079#0 GCCCTATTCTGCGCCAGCGGTAGCAGTGAGTGTGTTGTGAGGTGAATTCGTTCGAATAGC 246
consensus_7079#1 GCCCTATTCAGCGCCAGCGGTAGCAGTGAGTGTGTTGTGAGGTGAATTCGTTCGAACAGC 300
********* ********************************************** ***
consensus_7079#0 GAACAGTTTTGTG----GCAGAATAAATAGTGTTGCACTGTGTGGAAAATCACGAATATG 302
consensus_7079#1 GAACAGTTTTGTGTTAAACAGAATAAATAGTGTTGCACTGTGTGGAAAATCACGAATATG 360
************* ******************************************
consensus_7079#0 AAGGCCATCACGACCATGTGTGCGAAGAATGGTGGTGGTGCATCGCTGCCGGCGATTGCG 362
consensus_7079#1 AAGGCCATCACGACCATGTGTGCGAAGAATGGTGGTGGTGCATCGCTGCCGGCGATTGCG 420
************************************************************
consensus_7079#0 ACGGGTCGAGTGCAGCGCCACCGAGATGGTGAAAACGATGAAATCAAGCTGTATCTGTCG 422
consensus_7079#1 ACGGGTCGAGTGCAGCGCCACCGAGATGGTGAAAACGATGAAATCAAGCTGTATCTGTCG 480
************************************************************
consensus_7079#0 AAGCTGCGGGAGCTGGTTCCGTTCATGCCGAAAAACCGCAAACTGTCCAAGCTCGAGGTT 482
consensus_7079#1 AAGCTGCGAGAGCTGGTTCCGTTCATGCCGAAAAACCGCAAACTGTCCAAGCTCGAGGTT 540
******** ***************************************************
consensus_7079#0 ATCCAAAACGTTATTGACTACATCTGCGAGCTGCAAAATGCACTCGATTCGCATCCCGCG 542
consensus_7079#1 ATCCAAAACGTTATCGACTACATCTGCGAGCTGCAAAATGCACTCGATTCGCATCCCGCG 600
************** *********************************************
consensus_7079#0 GTCAACAGCTTCGACTCGTTGGCGGTGCTCCAGCAGCATCAGCAACAACAGCAAGTTGGA 602
consensus_7079#1 GTCAACAGCTTCGACTCGTTGGCGGTGCTCCAGCAGCATCAGCAGCAGCAGCA-GCAGCA 659
******************************************** ** ***** * * *
consensus_7079#0 TACATGGTGGAATCAATCGATACTGTACCGGCGCATCCAGCAGCAGCAGCATCCAGGCAA 662
consensus_7079#1 GCAGCAACAACAGCAAGTTGGGATACATGGTGGAATCAATCGATA--------------- 704
* *** * * * * *** * * *
consensus_7079#0 CCACTGGCGACCATCTTGAGCAGTGGGAGCAATGTTGCCGCCTCTAATATTAACGCTATT 722
consensus_7079#1 ------------------------------------------------------------
consensus_7079#0 GGCGAGGGACTACAACATCCTTGATGGCAAACGGCAGCCGTCACTCGATTGCCCGTGGTA 782
consensus_7079#1 ------------------------------------------------------------
consensus_7079#0 CATCGCCAAGGGGTGAATTGCGCTCTTGCAGGGCAGCGCTCCGCCGCACGAACCTGTTCC 842
consensus_7079#1 ------------------------------------------------------------
consensus_7079#0 AAACCATTGGCTTACAACATCTGTGATATTCCGTCGATACTGAGTCGCACGAGGAAGCCT 902
consensus_7079#1 ------------------------------------------------------------
consensus_7079#0 CAACAGGCAGCATCGATGGGAGGACGTCGACTAAGCGCGATTGAAGGTTCTTCCTCCTTC 962
consensus_7079#1 ------------------------------------------------------------
consensus_7079#0 TTCTCCTCGTCCTCGTCGAACTGAACGGGACTGAAACGAAAAGAGCGGTGTAGGAGCCCT 1022
consensus_7079#1 ------------------------------------------------------------
consensus_7079#0 TCGGAACCCTTCGGAAGTTGGTGGGCCTTGTCCAATTGAACACAACTTTCCAACACCAAC 1082
consensus_7079#1 ------------------------------------------------------------
consensus_7079#0 GGCTGTACCGCCAACCGGGGAAAGGTCGTCGGAGTCTTGCCAAGGTTCCAGGGAGAGCCC 1142
consensus_7079#1 ------------------------------------------------------------
consensus_7079#0 TCGACTCCAGCCAGAGATGATCTCAGGATGTATTAGGATGCTCCACCGGTGCCAGAGTGT 1202
consensus_7079#1 ------------------------------------------------------------
consensus_7079#0 TGGGCCGTGCTGTGCCCCGTACAGCGGCACCATTTATGGGGCCAGGCGGCCAACCAGCGC 1262
consensus_7079#1 ------------------------------------------------------------
consensus_7079#0 AGCAGAACGGAGTGCTCTGTACGTGTGTGTGTGTGTGTCTGTGTGTGTGTGGCTGTGCGT 1322
consensus_7079#1 ------------------------------------------------------------
consensus_7079#0 GTGTTCACCGTTACAGCAGTGTTTGCAACTGTCTCGGTGCCATTGCAGCAGCAGAACTCC 1382
consensus_7079#1 ------------------------------------------------------------
consensus_7079#0 TCGCTTTCGGAGCGCTCAATTCTGGTTGATGAATTTCATATTAACAACATAAATACCGTA 1442
consensus_7079#1 ------------------------------------------------------------
consensus_7079#0 ATTAACACTAGCTGACCAAGGTTCTACACATGTTGTCAACACTGATCCCATTTGAACGAT 1502
consensus_7079#1 ------------------------------------------------------------
consensus_7079#0 CCGGCGCCATTATC 1516
consensus_7079#1 --------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||