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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7088#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1073 fasta sequence
[CCGGCCACTGGGAGCCACGCCGGAGTATCTTGCCGGCCACTATATGCTGCAAGGCGGCTCCAGTATGCTGCCCGTAATGGCCCTGGCGCCGGAGGAAAACGAACGCATTCTCGATATGTGCGCTGCGCCGGGCGGCAAGAGCTCCCACATTGCCGCGCTGATGAAGAACACGGGCGTGCTGTTTGTCAACGATGCAAACAAGGAGCGGCTGCACGCGGTGTTGGGCAACTTCCATCGGCTCGGCATACAGAACGCAGTCATCACCTGTATGGACGGTGTCAAGTACCGCAACATCATGAAGGGCTTCGACCGCGTGCTGCTCGATGCGCCCTGCACCGGCTCGGGCGTCATCTCGAAGGACCCGAGCGTGAAGGCCACGAAGAACGA-GATCGATGTGCAGCGGTGTTACAACTTGCAGCGGCGCCTGCTGCTGACCGCGATCGATTGCCTGTCGGCCAGCTCGCCGACCGGCGGCTACCTGGTGTACTCCACCTGCTCCATCCTGCCGCAGGAAAACGAATGGGTGATTGATTTCGCACTGAAACGGCGCAACGTGCGCCTGGTGCCGACGGGGCTCGACTTCGGTGTCGAGGGCATGACCAACTTCGGGGCGCACCGGTTTCATCCGACGATGAAGCTAACGCGTCGCTTCTATCCCCACACCCACAATCTGGACGGGTTCTTCGTGGCCAAGCTGCAGAAATTCTCCGACGCCATACCGAAGTGCGTGGACGGTGAGCCGGAGGGGAAGGATGAGGTGGAGGAAGAGCCGGAGGAGGAAATGAAGCTGCCGAAGAAGATCGACAAGCGCGACTGGTACTACCAGGACATTATCGACGAGCGCAAGGCACAGCGGGAGGACAAAAACAAGAACCACGTCGTGACGGTGTTCCAGAAGCCAGCGAACGTTAAGAAGGGACCGAAAAAGCCCAAACAACCACAGCCGAGTGCTGGGGAAAGGGAGC-AAAGCCACAAAAGCCGGCAAGCGAGGAGCCGAAGCAGCCAGTAACGAACGGCAGCAGCAGCAAGCAGCGTCAACCGGCACCGAGAAGCAAGACCGAACAACGGGAAGC]
[+] EMBL BM636591 [CCGGCCACTGGGAGCCACGCCGGAGTATCTTGCCGGCCACTATATGCTGCAAGGCGGCTCCAGTATGCTGCCCGTAATGGCCCTGGCGCCGGAGGAAAACGAACGCATTCTCGATATGTGCGCTGCGCCGGGCGGCAAGAGCTCCCACATTGCCGCGCTGATGAAGAACACGGGCGTGCTGTTTGTCAACGATGCAAACAAGGAGCGGCTGCACGCGGTGTTGGGCAACTTCCATCGGCTCGGCATACAGAACGCAGTCATCACCTGTATGGACGGTGTCAAGTACCGCAACATCATGAAGGGCTTCGACCGCGTGCTGCTCGATGCGCCCTGCACCGGCTCGGGCGTCATCTCGAAGGACCCGAGCGTGAAGGCCACGAAGAACGA GATCGATGTGCAGCGGTGTTACAACTTGCAGCGGCGCCTGCTGCTGACCGCGATCGATTGCCTGTCGGCCAGCTCGCCGACCGGCGGCTACCTGGTGTACTCCACCTGCTCCATCCTGCCGCAGGAAAACGAATGGGTGATTGATTTCGCACTG ]
[+] EMBL CNS08QZM [ cccATATGTGCGCTGCGCCGGGCGGCAAGAGCTCCCACATTGCCGCGCTGATGAAGAACACGGGCGTGCTGTTTGTCAACGATGCAAACAAGGAGCGGCTGCACGCGGTGTTGGGCAACTTCCATCGGCTCGGCATACAGAACGCAGTCATCACCTGTATGGACGGTGTCAAGTACCGCAACATCATGAAGGGCTTCGACCGCGTGCTGCTCGATGCGCCCTGCACCGGCTCGGGCGTCATCTCGAAGGACCCGAGCGTGAAGGCCACGAAGAACGA GATCGATGTGCAGCGGTGTTACAACTTGCAGCGGCGCCTGCTGCTGACCGCGATCGATTGCCTGTCGGCCAGCTCGCCGACCGG GGCTACCTGGTGTACTCCACCTGCTCCATCCTGCCGCA GAAAACGAATGGGTGATTGATTTCGCACTGAAACGGCGCAACGTGCGACTGGTGCCGACGGGGCTCGACTTTTTTGTCGAGGGCATGACCAACTTCGGGGCGCACCGGTTTCGGGCGACGATGAAGCTAACGCGTCGCTTCTATCCCCACACCCACAATCTGGACGGGTTCTTCGTGGCCAAGCTGCAGAAATTCTCCGACGCCATACCGAAGTGCGTGGACGGTGAGCCGGAGGGGAAGGATGAGGTGGAGGAAGAGCCGGAGGAGGAAATGAAGCTGCCGAAGAAGATCGACAAGCGCGACTGGTACTACCAGGACATTATCGACGAGCGCAAGGCACAGCGGGAGGACAAAAACAAGAACCACGTCGTGACGGTGTTCCAGAAGCCAGCGAACGTTAAGAAGGGACCGAAAAAGCCCAAACAACCACAGCCGAGTGCTGGGGAAAGGGAGC AAAGCCACAAAAGCCGGCAAGCGAGGAGCCGAAGCAGCCAGTAACGAACGGCAGCAGCAGCAAGCAGCGTCAACCGGCACCGAGAAGCAAGACCGAACAACGGGAAGC]
[+] EMBL AGA280553 [ GGGCAACTTCCATCGGCTCGGCATACAGAACGCAGTCATCACCTGTATGGACGGTGTCAAGTACGGCAACATCATGAAGGGCTTCGACCGCGTGCTGCTCGATGCGCCCTGCACCGGCTCGGGCGTCATCTCGAAGGACCCGAGCGTGAAGGCCACGAAGAACGA GATCGATGTGCAACGGTGCTTTAACTTGCAGCGGCGTCTGCTGCTGACCGCGATCGATTGCCTGTCGGCCAGCTCGCCGACCGGCGGCTACCTGGTGTACTCCACCTGCTCCATCCTGCCGCAGGAAAACGAATGGGTAATTGATTTTGCGCTGAAACGGCGCAACGTGCGCCTGGTGCC ]
[+] EMBL AL934769 [ CGAGGAT TATGT CA CGGTGCTTTAACTTGCAGCGGCGTCTGCTGCTGACCGCGATCGATTGCCTGTCGGCCAGCTCGCCGACCGGCGGCTACCTGGTGTACTCCACCTGCTCCATCCTGCCGCAGGAAAACGAATGGGTAATTGATTTTGCGCTGAAACGGCGCAACGTGCGCCTGGTGCCGACGGGGCTCGACTTCGGTGTCGAGGGCATGACCAACTTCGGGGCGCACCGGTTTCATCCGACGATGAAGCTAACGCGTCGCTT ]
[+] EMBL BM648116 [ ccgGGCGCCTGCTGCTGACCGCGATCGATTGCCTGTCGGCCAGCTCGCCGACCGGTGGCTATCTGGTGTACTCCACCTGCTCCATCCTGCCGCAGGAAAACGAATGGGTGATTGATTTCGCACTGAAACGGCGCAACGTGCGCCTGGTGCCGACGGGGCTCGACTTCGGTGTCGAGGGCATGACCAACTTCGGGGCGCACCGGTTTCATCCGACGATGAAGCTAACGCGTCGCTTCTATCCCCACACCCACAATCTGGACGGGTTTTTCGTGGCGAAGCTGCAGAAATTCT CGACGCCATACCGAAGAGCGTGGACGGTGAGCCGGAGGCGGAGGATGAGGTGGAGGAAGAGCCGGAGGAGGAAATGAAGCTGCCGAAGAAGATCGACAAGCGCGACTGGTACTACCAGGACATTATCGACGAGCGCAAGGCACAGCGGGAGGACAAAAACAAGAACCACGTCGTGACGGTGTTCCAGAAGCCAGCGAACGTTAAGAAGGGACCGAAAAAGCCCAAACAACCACAGCCGAGTGCTGGGGAAAGGGAGCAAAAGCCACAAAAGCCGGCAAGCGAGGAGCCGAAGCAGCCAGCAACGAACGGCACCAGCAGC AGCAGCaa ]
consensusID : consensus_7088#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 444 fasta sequence
[GATCGCCCGAGGNTAAGACGAGATCGATGTGCACGGTGCTTTAACTTGCAGCGGCGTCTGTGCTGACGCGATCGATTGCTGTNGGCAGCTCGCCGACGGTGGGTACTGGTGTACTCCACCTGGTCCATCCTGCGCAGGAAAACGAATGGGTAATTGATTTTTGCGCTGAAACGGGCAACGTGCGCCTGGTGCCGACGGNGCTCGACTTCGGTGTCGAGGGCATGACCAACTTCGGGGCGCACCGGTTTCATCCGACGATGAAGCTAACGCGTCTGCTTCTATTCCCAAAACCACAATCTGGACGGGTTCTTCGTGGCGAAGCTGCAGAAATTCTCCGACGCCATACCGAAGAGCGTGTGACGGTGAGCCGGAGTGCGGAGGATGATGTGGAGGAAGAGCCGGAGGAGGAAATGAAGCTGCCGAAGAAGATCTGACAAGCTGCTG]
[+] EMBL AL931084 [GATCGCCCGAGGNTAAGACGAGATCGATGTGCACGGTGCTTTAACTTGCAGCGGCGTCTGTGCTGACGCGATCGATTGCTGTNGGCAGCTCGCCGACGGTGGGTACTGGTGTACTCCACCTGGTCCATCCTGCGCAGGAAAACGAATGGGTAATTGATTTTTGCGCTGAAACGGGCAACGTGCGCCTGGTGCCGACGGNGCTCGACTTCGGTGTCGAGGGCATGACCAACTTCGGGGCGCACCGGTTTCATCCGACGATGAAGCTAACGCGTCTGCTTCTATTCCCAAAACCACAATCTGGACGGGTTCTTCGTGGCGAAGCTGCAGAAATTCTCCGACGCCATACCGAAGAGCGTGTGACGGTGAGCCGGAGTGCGGAGGATGATGTGGAGGAAGAGCCGGAGGAGGAAATGAAGCTGCCGAAGAAGATCTGACAAGCTGCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7088#0 CCGGCCACTGGGAGCCACGCCGGAGTATCTTGCCGGCCACTATATGCTGCAAGGCGGCTC 60
consensus_7088#1 ------------------------------------------------------------
consensus_7088#0 CAGTATGCTGCCCGTAATGGCCCTGGCGCCGGAGGAAAACGAACGCATTCTCGATATGTG 120
consensus_7088#1 ------------------------------------------------------------
consensus_7088#0 CGCTGCGCCGGGCGGCAAGAGCTCCCACATTGCCGCGCTGATGAAGAACACGGGCGTGCT 180
consensus_7088#1 ------------------------------------------------------------
consensus_7088#0 GTTTGTCAACGATGCAAACAAGGAGCGGCTGCACGCGGTGTTGGGCAACTTCCATCGGCT 240
consensus_7088#1 ------------------------------------------------------------
consensus_7088#0 CGGCATACAGAACGCAGTCATCACCTGTATGGACGGTGTCAAGTACCGCAACATCATGAA 300
consensus_7088#1 ------------------------------------------------------------
consensus_7088#0 GGGCTTCGACCGCGTGCTGCTCGATGCGCCCTGCACCGGCTCGGGCGTCATCTCGAAGGA 360
consensus_7088#1 ----------------------------------------------------------GA 2
**
consensus_7088#0 CCCGAGCGTGAAGGCCACGAAGAACGAGATCGATGTGCAGCGGTGTTACAACTTGCAGCG 420
consensus_7088#1 TC---GCCCGAGGNT-----AAGACGAGATCGATGTGCA-CGGTGCTTTAACTTGCAGCG 53
* ** ** * * **************** ***** * ***********
consensus_7088#0 GCGCCTGCTGCTGACCGCGATCGATTGCCTGTCGGCCAGCTCGCCGACCGGCGGCTACCT 480
consensus_7088#1 GCGTCTG-TGCTGAC-GCGATCGATTGC-TGTNGGC-AGCTCGCCGAC-GGTGGGTAC-T 107
*** *** ******* ************ *** *** *********** ** ** *** *
consensus_7088#0 GGTGTACTCCACCTGCTCCATCCTGCCGCAGGAAAACGAATGGGTGATTGATTTC-GCAC 539
consensus_7088#1 GGTGTACTCCACCTGGTCCATCCTGC-GCAGGAAAACGAATGGGTAATTGATTTTTGCGC 166
*************** ********** ****************** ******** ** *
consensus_7088#0 TGAAACGGCGCAACGTGCGCCTGGTGCCGACGGGGCTCGACTTCGGTGTCGAGGGCATGA 599
consensus_7088#1 TGAAACGG-GCAACGTGCGCCTGGTGCCGACGGNGCTCGACTTCGGTGTCGAGGGCATGA 225
******** ************************ **************************
consensus_7088#0 CCAACTTCGGGGCGCACCGGTTTCATCCGACGATGAAGCTAACGCGTC-GCTTCTATCCC 658
consensus_7088#1 CCAACTTCGGGGCGCACCGGTTTCATCCGACGATGAAGCTAACGCGTCTGCTTCTATTCC 285
************************************************ ******** **
consensus_7088#0 CACACCCACAATCTGGACGGGTTCTTCGTGGCCAAGCTGCAGAAATTCTCCGACGCCATA 718
consensus_7088#1 CAAAACCACAATCTGGACGGGTTCTTCGTGGCGAAGCTGCAGAAATTCTCCGACGCCATA 345
** * *************************** ***************************
consensus_7088#0 CCGAAGTGCGTG-GACGGTGAGCCGGAGGG-GAAGGATGAGGTGGAGGAAGAGCCGGAGG 776
consensus_7088#1 CCGAAGAGCGTGTGACGGTGAGCCGGAGTGCGGAGGATGATGTGGAGGAAGAGCCGGAGG 405
****** ***** *************** * * ******* *******************
consensus_7088#0 AGGAAATGAAGCTGCCGAAGAAGATC-GACAAGCGCGACTGGTACTACCAGGACATTATC 835
consensus_7088#1 AGGAAATGAAGCTGCCGAAGAAGATCTGACAAGCT--GCTG------------------- 444
************************** ******* ***
consensus_7088#0 GACGAGCGCAAGGCACAGCGGGAGGACAAAAACAAGAACCACGTCGTGACGGTGTTCCAG 895
consensus_7088#1 ------------------------------------------------------------
consensus_7088#0 AAGCCAGCGAACGTTAAGAAGGGACCGAAAAAGCCCAAACAACCACAGCCGAGTGCTGGG 955
consensus_7088#1 ------------------------------------------------------------
consensus_7088#0 GAAAGGGAGCAAAGCCACAAAAGCCGGCAAGCGAGGAGCCGAAGCAGCCAGTAACGAACG 1015
consensus_7088#1 ------------------------------------------------------------
consensus_7088#0 GCAGCAGCAGCAAGCAGCGTCAACCGGCACCGAGAAGCAAGACCGAACAACGGGAAGC 1073
consensus_7088#1 ----------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||