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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7101#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 831 fasta sequence
[ATAAAAGCATATTTTATTTCTTTTGGGGATTTTTGAAATATTTTTGCACGATTTTTTTTACGTTAAAATACTACCAACATTCTCAATGGGTTTGTTCAATGGTTTATCTGATTATCACATATCTTTCCTCCAAAAAGCACGGCTCCCCTTCACGTCATCAACAGTGCTGTGATGTGATTTTCTAGCACAGCCTGCGCCAGATTAGCGTTGTTTTTCACCGCCAGC-GA-GTA-GGCGGACTCGCCGTCCTCGTTCGTCTCGGTAAAGCTAGCCCCGGAATTTAGCAGCTCGTTACAGGTGTGGGGATGGTTGCCGGCAGCCGCCATACATGAGCGCAGTATTGCCTACGATGTCCATGTGATTGACCACTGCTCCGTTTTCCACCAGCAATCGGACGATCTCATTGTGTCCACCTGCTCCTGCCAGCAGTATCGGGGTGATCATGTCCATTGCTTGTCTGTTAACATCCGCACCACACTTGATAAGAATACTGGCGCGCCCGCAAGCTGTCCATAGTAGCACGCCCAGTGGAGCGGCGTGAACTGATCGGCATCTGGAACGTCGACCGCCTGTTCCGCCCGTATCTGTTCCTCGGTTATTTCCCCTTGTCCGGTTTTTTCGTGAAAGTTGAGACAGATTTCACTGGGAATGTTTGCTTCCGTGTTGCCGCGCTGCAAGTTTGTTAGCACCGTGTTCGAAGGTTTGTACGGCAGGAAGGCACTTTTCCTTTTGCCGCTCGCCAGCAGCAATGGATTGAAATCCATCTTTCTATCATCCTCGGAATTTGGAGACGAGCTCATGGTGAACGAATTCGGTGTTTGTGTGGTGATTATT]
[+] EMBL BX611607 [ATAAAAGCATATTTTATTTCTTTTGGGGATTTTTGAAATATTTTTGCACGATTTTTTTTACGTTAAAATACTACCAACATTCTCAATGGGTTTGTTCAATGGTTTATCTGATTATCACATATCTTTCCTCCAAAAAGCACGGCTCCCCTTCACGTCATCAACAGTGCTGTGATGTGATTTTCTAGCACAGCCTGCGCCAGATTAGCGTTGTTTTTCACCGCCAGC GA GTA GGCAGACTCGCCGTCCTCGTTCGTCTCGGTAAAGCT ]
[+] EMBL CNS09D8N [ ATTTCGTTTGGGGATTTTTGAAATATTTTTGCACGATTTTTTTAACGTTAAAATACTACCAACATTCTCAATGGGTTTGTTCAATGGTTTATCTGATTATCACATATCTTTCCTCCAAAAAGCACGGCTTCCCTTCACGTCATCAGCAGTGCTGTGATGTGATTTTCTAGCACAGCCTGTGCCAGATTAGCGTTGTTTTTCACCGCCAGC GA GTA GGCGGACTCGCCGTCCTCGTTCGTCTCGGTAAAGCTAGCCCCGGAATTTAGCAGCTCGTTACAGGTGTGGGGATGGTTGCCGGCAGCCGCCATACATGAGCGCAGTATTGCCTACGATGTCCATGTGATTGACCACTGCTCCGTTTTCCACCAGCAATCGGACGATCTCATTGTGTCCACCTGCTCCTGCCAGCAGTATCGGGGTGATCATGTCCATTGCTTGTCTGTTAACATCCGCACCACACTTGATAAGAATACTGGCGCGCCCGCAAGCTGTCCATAGTAGCACGCCCAGTGGAGCGGCGTGAACTGATCGGCATCTGGAACGTCGACCGCCTGTTCCGCCCGTATCTGTTCCTCGGTTATTTCCCCTTGTCCGGTTTTTTCGTGAAAGTTGAGACAGATTTCACTGGGAATGTTTGCTTCCGTGTTGCCGCGCTGCAAGTTTGTTAGCACCGTGTTCGAAGGTTTGTACGGCAGGAAGGCACTTTTCCTTTTGCCGCTCGCCAGCAGCAATG ]
[-] EMBL CNS09D8M [ AGCTGATGTATGGCGGACTCGCCGTCCTCGTTCGTCTCGGTAAAGCTAGCCCCGGAATTTAGCAGCTCGTTACAGGTGTGGGGATGGTTGCCGGCAGCCG CATACATGAGCGCAGTATTGCCTACGATGTCCATGTGATTGACCACTGCTCCGTTTTCCACCAGCAATCGGACGATCTCATTGTGTCCACCTGCTCCTGCCAGCAGTATCGGGGTGATCATGTCCATTGCTTGTCTGTTAACATCCGCACCACACTTGATAAGAATACTGGC CG CCGCAAGCTGTCCATAGTAGCACGCCCAGTGGAGCGGCGTGAACTGATCGGCATCTGGAACGTCGACCGCCTGTTCCGCCCGTATCTGTTCCTCGGTTATTTCCCCTTGTCCGGTTTTTTCGTGAAAGTTGAGACAGATTTCACTGGGAATGTTTGCTTCCGTGTTGCCGCGCTGCAAGTTTGTTAGCACCGTGTTCGAAGGTTTGTACGGCAGGAAGGCACTTTTCCTTTTGCCGCTCGCCAGCAGCAATGGATTGAAATCCATCTTTCTATCATCCTCGGAATTTGGAGACGAGCTCATGGTGAACGAATTCGGTGTTTGTGTGGTGATTATT]
[-] EMBL BX623830 [ CTGTTCCGCCCGTATCTGTTCCTCGGTTATTTCCCCTTGTCCGGTTTTTTCGTGAAAGTTGAGACAGATTTCACTGGGAATGTTTGCTTCCGTGTTGCCGCGCTGCAAGTTTGTTAGCACCGTGTTCGAAGGTTTGTACGGCAGGAAGGCACTTTTCCTTTTGCCGCTCGCCAGCAGCAATGGATTGAAATCCATCTTTCTATCATCCTCGGAATTTGGAGACGAGCTCATG ]
[-] EMBL BX627365 [ CGAAGGCTTGTACGGCAGGAAGGCACTTTTTCTTTTGCCGCTCGCCAGCAGCAATGGATTGAAATCCATCTTTCTgtgagg ]
consensusID : consensus_7101#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 569 fasta sequence
[AAGCTAGCCCTCGGAATATAGCAGCTCGNNACAGGTGTGGGGATGGTTGCCGGCAGCCGCATACATGAGCGCAGTATTGCTTACGATGTCCATGTGATTCACCACTGCTCNGTTTTCCACCAGCTATCGGACGATCTCTATTGTGTCCACNTGCTCCTGCCAGCAGTATCGGGGTGATCATGTCCATTGCTTGTCTGTTAACATCCGCACCACACTTGATACAGAATACTGGCCGCCGCAAGCTGTCCATAGTAGCACGCCCAGTGGAGCGGCGTGAATNTGGTCGGCATCTGGTAACGTACGAACCGCCATGTTTCCGCCCGTATCTAGTNTCCTACGGTTTATTTCCCCTTGCCCGGTTTTATTCTGTCGAAAGNTTGAGACAGATTTCACTGGGAAATGTTTGCTTCCGTGCTTGCCGCGCTGACAAGATCTTGATTAGCACCGTGTTCGAANGGACTTGTCACGNGCAGCGAAGGCACTTTTCCTTTTGCCGCTGCGCCAGCAGCAATGGATTGNAAATCCATCTTTCTATCATCCTCGGAATTTGGAGTACCGAGCTNCATGGT]
[-] EMBL BX624305 [AAGCTAGCCCTCGGAATATAGCAGCTCGNNACAGGTGTGGGGATGGTTGCCGGCAGCCGCATACATGAGCGCAGTATTGCTTACGATGTCCATGTGATTCACCACTGCTCNGTTTTCCACCAGCTATCGGACGATCTCTATTGTGTCCACNTGCTCCTGCCAGCAGTATCGGGGTGATCATGTCCATTGCTTGTCTGTTAACATCCGCACCACACTTGATACAGAATACTGGCCGCCGCAAGCTGTCCATAGTAGCACGCCCAGTGGAGCGGCGTGAATNTGGTCGGCATCTGGTAACGTACGAACCGCCATGTTTCCGCCCGTATCTAGTNTCCTACGGTTTATTTCCCCTTGCCCGGTTTTATTCTGTCGAAAGNTTGAGACAGATTTCACTGGGAAATGTTTGCTTCCGTGCTTGCCGCGCTGACAAGATCTTGATTAGCACCGTGTTCGAANGGACTTGTCACGNGCAGCGAAGGCACTTTTCCTTTTGCCGCTGCGCCAGCAGCAATGGATTGNAAATCCATCTTTCTATCATCCTCGGAATTTGGAGTACCGAGCTNCATGGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7101#0 ATAAAAGCATATTTTATTTCTTTTGGGGATTTTTGAAATATTTTTGCACGATTTTTTTTA 60
consensus_7101#1 ------------------------------------------------------------
consensus_7101#0 CGTTAAAATACTACCAACATTCTCAATGGGTTTGTTCAATGGTTTATCTGATTATCACAT 120
consensus_7101#1 ------------------------------------------------------------
consensus_7101#0 ATCTTTCCTCCAAAAAGCACGGCTCCCCTTCACGTCATCAACAGTGCTGTGATGTGATTT 180
consensus_7101#1 ------------------------------------------------------------
consensus_7101#0 TCTAGCACAGCCTGCGCCAGATTAGCGTTGTTTTTCACCGCCAGCGAGTAGGCGGACTCG 240
consensus_7101#1 ------------------------------------------------------------
consensus_7101#0 CCGTCCTCGTTCGTCTCGGTAAAGCTAGCCC-CGGAATTTAGCAGCTCGTTACAGGTGTG 299
consensus_7101#1 ---------------------AAGCTAGCCCTCGGAATATAGCAGCTCGNNACAGGTGTG 39
********** ****** ********** *********
consensus_7101#0 GGGATGGTTGCCGGCAGCCGCCATACATGAGCGCAGTATTGCCTACGATGTCCATGTGAT 359
consensus_7101#1 GGGATGGTTGCCGGCAGCCGC-ATACATGAGCGCAGTATTGCTTACGATGTCCATGTGAT 98
********************* ******************** *****************
consensus_7101#0 TGACCACTGCTCCGTTTTCCACCAGCAATCGGACGATCTC-ATTGTGTCCACCTGCTCCT 418
consensus_7101#1 TCACCACTGCTCNGTTTTCCACCAGCTATCGGACGATCTCTATTGTGTCCACNTGCTCCT 158
* ********** ************* ************* *********** *******
consensus_7101#0 GCCAGCAGTATCGGGGTGATCATGTCCATTGCTTGTCTGTTAACATCCGCACCACACTTG 478
consensus_7101#1 GCCAGCAGTATCGGGGTGATCATGTCCATTGCTTGTCTGTTAACATCCGCACCACACTTG 218
************************************************************
consensus_7101#0 ATA-AGAATACTGGCGCGCCCGCAAGCTGTCCATAGTAGCACGCCCAGTGGAGCGGCGTG 537
consensus_7101#1 ATACAGAATACTGGC-CGCC-GCAAGCTGTCCATAGTAGCACGCCCAGTGGAGCGGCGTG 276
*** *********** **** ***************************************
consensus_7101#0 AA-CTGATCGGCATCTGG-AACGTC--GACCGCC-TGTT-CCGCCCGTATCTGTTCCTC- 590
consensus_7101#1 AATNTGGTCGGCATCTGGTAACGTACGAACCGCCATGTTTCCGCCCGTATCTAGTNTCCT 336
** ** *********** ***** ****** **** ************ * *
consensus_7101#0 ---GGTTATTTCCCCTTGTCCGGTTTTTTCGTG----AAAGTTGAGACAGATTTCACTGG 643
consensus_7101#1 ACGGTTTATTTCCCCTTGCCCGGTTTTATTCTGTCGAAAGNTTGAGACAGATTTCACTGG 396
* ************* ******** * ** ** *******************
consensus_7101#0 GAA-TGTTTGCTTCCGTG-TTGCCGCGCTG-CAAG---TTTGTTAGCACCGTGTTCGAAG 697
consensus_7101#1 GAAATGTTTGCTTCCGTGCTTGCCGCGCTGACAAGATCTTGATTAGCACCGTGTTCGAAN 456
*** ************** *********** **** ** *****************
consensus_7101#0 G--TTTGT-ACGG-CAG-GAAGGCACTTTTCCTTTTGCCGCT-CGCCAGCAGCAATGGAT 751
consensus_7101#1 GGACTTGTCACGNGCAGCGAAGGCACTTTTCCTTTTGCCGCTGCGCCAGCAGCAATGGAT 516
* **** *** *** ************************ *****************
consensus_7101#0 TGAAA-TCCATCTTTCTATCATCCTCGGAATTTGGAGA--CGAGCTC-ATGGTGAACGAA 807
consensus_7101#1 TGNAAATCCATCTTTCTATCATCCTCGGAATTTGGAGTACCGAGCTNCATGGT------- 569
** ** ******************************* ****** *****
consensus_7101#0 TTCGGTGTTTGTGTGGTGATTATT 831
consensus_7101#1 ------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||