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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7117#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1905 fasta sequence
[CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGGCACAGAGTGGCACCGCCACAACGGGGAGCGCCCTGTCGTTTCGCTCGCAGATCTGCTTGACTTTCATACATTCGCAGGTAACTTGCTCAGCGCACGGAGCAACGGAGTGCAGTGAAAGAATCAGAGAAACAGAGAGAGAAAAAAGTGAACCATAACAAACAAAACAAAAAATCCCACATCCACCCACCCACAGCCCTACTGGTGGGTGCCGCACGAGCGGGCTTGAGAGGTAGGGGCGCGCGCGCGCTCGAAATTTCGCTGTCACCGCGGGGCCCCCGCACGAGGTGGGGAGTCAGATCTTTGGTGGCGCGATTCGATTGTGCGCCATTTGTGCGCTGGCCAGCAGCAGCAGCAGCAAACGTAAGACACAGTGAACACCCCTGCCCCACGATCAAACCGCTCAAACGGGCGAAGTGTGCGCCCGCGAGACGAAGCGAAAAGCAAATAGAAATCGAACCGTCCCGGGCGGTAAGCGGGGGTCGGGAGCACCCAAAAACAACAACAACAAAAAGGAGAACAATAATAAT---AACAACAACAACAACAACGAGTTACTTCCGTGCTGCCGAATTTCGA---AGCAGTAGCCAGCAACAGAATGAAGGTGTTACGGGAGAAGATATCGAAAATGGCTGGAGGAGTGCAGCAAGCCATCGTGTGGTTTAAAGCCGGCGGCATCGTCAGCCCGATGCTGCTCATCTACGTACTTCACATGCTCTGGCCCGAGTTTCGCCCGTTCAGCATACTGTTTGTGATTGCGATCGGGTTCCTGTGGGACCGGCCGGCCGGCCAGCAAGTGGCGGCCCCCTCCGTAACCGCCGGCTCCCCGCTGGCCGAGCTCGGGGCGAAGGTGTGGGCGCTGCGCACGACCCGCCCGCTCAGCATGGTGGCGGGCAGTGTGGCCGGCTGCCTCACCTACATCTACCTGGTGTGCTACGTGCTGCCCCTGTGGCTGTCGTTGGGCGTCGCCGGGCTGGTCGTGTGCTGGGATCGGTTCGGCGTGCCCGGTGGTCCGCTCAGCATTGCGCCGAGTTTGCACGATACGCTGCAGCAGGAGCAGCAGGAAATGGACGAGTTTGTGCCGGAGCTGACGGAGGTGAGCCGCGTGCTGCTGCAAG-GGTCGGTGAGCAGGGCGCGGACACGACACCGCTCGCCGACGGGTTCGCCGCAGCGGCCGGTGGCCGCGGGAACAGCGCGGAGGAGGACGAGGAGCAGTACCTGCGGACGCTCATCCCGGAGGCGACCAGCAACGATTTCGAGTCGGCCGAGCTGAGCGGCTCCAGCAGCGACGAGCTGTTCTGCCCCGAGGGCCCGGCGGTGCGGAAGGCGGGTCGGGCGCACGGCCGGCCGGGCGAGCAGCAGCCGATCGAGTTCAAGAGCAGCCACTTTAACGCGAACAGCTCGTCCGACTCGGACGACAACATGTCGCGGGGGCTCAACTTTAACGACGACGAGGACGACGCGGACGGCGCGTCCCGGCGACCGGCGGCCAAAGGG---AGCAGCAGCAGCAGCAGCAGGCAGCAGCCGACTGGTGAGGCGATGCTGATGATGAGCGCCACCAGCCTGGCTAGCAACGTGCTGGTCGACACGGTGTACCGGCGTCTGCTGGACGCGGGCGCCCTGCACCAGCAGCAGCAGCCATCGCCGCACCATAGTATTCTTCAGTCGGTTGCCTCGCTCGGCAGCACGATACAGGCGCTCCGGGGGCAGACGGTGCAGGAGGAGGGCACCGATGACGAATCGACCGACGCGGACGAGGACAGTGAGTTTGAAATGCTCAACTCGGAGGAGCTGAACAACTTATGAGCACGTGGTGGCGCTTCCGAGGATTGTTAGAAGACATGTTAGGGAGAGAAGGAAAGAGAGATAGA]
[+] EMBL BM600679 [CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGGCACAGAGTGGCACCGCCACAACGGGGAGCGCCCTGTCGTTTCGCTCGCAGATCTGCTTGACTTTCATACATTCGCAGGTAACTTGCTCAGCGCACGGAGCAACGGAGTGCAGTGAAAGAATCAGAGAAACAGAGAGAGAAAAAAGTGAACCATAACAAACAAAACAAAAAATCCCACATCCACCCACCCACAGCCCTACTGGTGGGTGCCGCACGAGCGGGCTTGAGAGGTAGGGGCGCGCGCGCGCTCGAAATTTCGCTGTCACCGCGGGGCCCCCGCACGAGGTGGGGAGTCAGATCTTTGGTGGCGCGATTCGATTGTGCGCCATTTGTGCGCTGGCCAGCAGCAGCAGCAGCAAACGTAAGACACAGTGAACACCCCTGCCCCACGATCAAACCGCTCAAACGGGCGAAGTGTGCGCCCGCGAGACGAAGCGAAAAGCAAATAGAAATCGAACCGTCCCGGGCGGTAAGCGGGGGTCGGGAGCACCCAAAAACAACAACAACAAAAAGGAGAACAATAATAATAACAACAACAACAACAACAACGAGTTACTTCCGTGCTGCC ]
[+] EMBL BM590742 [ ccgCAGTGAACACCCCTGCCCCACGATCAAACCGCTCAAACGGGCGAAGTGTGCGCCCGCGAGACGAAGCGAAAAGCAAATAGAAATCGAACCGTCCCGGGCGGTAAGCGGGGGTCGGGAGCACCCAAAAACAACAACAACAAAAAGGAGAACAATAATAATAACAACAACAACAACAACAACGAGTTACTTCCGTGCTGCCGAATTTCGA AGCAGTAGCCAGCAACAGAATGAAGGTGTTACGGGAGAAGATATCGAAAATGGCTGGAGGAGTGCAGCAAGCCATCGTGTGGTTTAAAGCCGGCGGCATCGTCAGCCCGATGCTGCTCATCTACGTACTTCACATGCTCTGGCCCGAGTTTCGCCCGTTCAGCATACTGTTTGTGATTGCGATCGGGTTCCTGTGGGACCGGCCGGCCGGCCAGCAAGTGGCGGCCCCCTCCGTAACCGCCGGCTCCCCGCTGGCCGAGCTCGGGGCGAAGGTGTGGGCGCTGCGCACGACCCGCCCGCTCAGCATGGTGGCGGGCAGTGTGGCCGGCTGCCTCACCTACATCTACCTGGTGTGCTACGTGCT ]
[+] EMBL BM633462 [ AGGAGAACAATAATAAT AACAACAACAACAACAACGAGTTACTTCCGTGCTGCCGAATTTCGAAGCAGCAGTAGCCAGCAACAGAATGAAGGTGTTACGGGAGAAGATATCGAAAATGGCTGGAGGAGTGCAGCAAGCCATCGTGTGGTTTAAAGCCGGCGGCATCGTCAGCCCGATGCTGCTCATCTACGTACTTCACATGCTCTGGCCCGAGTTTCGCCCGTTCAGCATACTGTTTGTGATTGCGATCGGGTTCCTGTGGGACCGGCCGGCCGGCCAGCAAGTGGTGGCCCCCTCCGCAACCGCCGGCTCCCCGCTGGCCGAGCTCGGGGCGAAGTTGTGGGCGCTGCGCACGACCCGCCCGCTCAGCATGGTGGCGGGCAGTGTGGCCGGCTGCCTCACCTACACCTACCTGGTGTGCTACGTGCTGCCCCTGTGGCTGTCGTTGGGCGTCGCCGGGCTGGTCGTGTGCTGGGATCGGTTCGGCGTGCCCGGTGGTCCGCTCAGCATTGCGCCGAGTTTGCACGATACGCTGCAGCAGGAGCAGCAGGAAATGGACGAGTTTGTGCCGGAGCTGACGGAGGTGAGCCGCGTGCTGCTGCAAG GGTCGGTGAGCAGGGCGCGGACACGACAC ]
[+] EMBL BM633416 [ ccGATCGGTTCGGCGTGCCCGGTGGTCCGCTCAGCATTGCGCCGAGTTTGCACGATACGCTGCAGCAGGAGCAGCAGGAAATGGACGAGTTTGTGCCGGAGCTGACGGAGGTGAGCCGCGTGCTGCTGCAGGAGGTCGGTGAGCAGGGCGCGGACACGACACCGCTCGCCGACGGGTTCGCCGCAGCGGCCGGTGGCCGCGGGAACAGCGCGGAGGAGGACGAGGAGCAGTACCTGCGGACGCTCATCCCGGAGGCGACCAGCAACGATTTCGAGTCGGCCGAGCTGAGCGGCTCCAGCAGCGACGAGCTGTTCTGCCCCGAGGGCCCGGCGGTGCGGAAGGCGGGTCGGGCGCACGGCCGGCCGGGCGAGCAGCAGCCGATCGAGTTCAAGAGCAGCCACTTTAACGCGAACAGCTCGTCCGACTCGGACGACAACATGTCGCGGGGGCTCAACTTTAACGACGACGAGGACGACGCGGACGGCGCGTCCCGGCGACCGGCGGCCAAAGGG AGCAGCAGCAGCAGCAGCAGGCAGCAGCCGACTGGTGAGGCGATGCTGATGATGAGCGCCACCAGCCTGGCTAGCAACGTGCTGGTCGACACGGTGTACCGGCGTCTGCTGGACGCGGGCGCCCTGCACCAGCAGCAGCAGCCATCGCCGCACCATAGTATTCTTCAGTCGGTTG ]
[+] EMBL BM600423 [ ccgCCGGAGGCGACCAGCAACGATTTCGAGTCGGCCGAGCTGAGCGGCTCCAGCAGCGACGAGCTGTTCTGCCCCGAGGGCCCGGCGGTGCGGAAGGCGGGTCGGGCGCACGGCCGGCCGGGCGAGCAGCAGCCGATCGAGTTCAAGAGCAGCCACTTTAACGCGAACAGCTCGTCCGACTCGGACGACAACATGTCGCGGGGGCTCAACTTTAACGACGACGAGGACGACGCGGACGGCGCGTCCCGGCGACCGGCGGCCAAAGGGAGCAGCAGCAGCAGCAGCAGCAGGCAGCAGCCGACTGGTGAGGCGATGCTGATGATGAGCGCCACCAGCCTGGCCAGCAACGTGCTGGTCGACACGGTGTACCGGCGTCTGCTGGACGCGGGCGCCCTGCACCAGCAGCAGCAGCCATCGCCGCACCATAGTATTCTTCAGTCGGTTGCCTCGCTCGGCAGCACGATACAGGCGCTCCGGGGGCAGACGGTGCAGGAGGAGGGCACCGATGACGAATCGACCGACGCGGACGAGGACAGTGAGTTTGAAATGCTCAACTCGGAGGAGCTGAACAACTTATGAGCACGTGGTGGCGCTTCCGAGGATTGTTAGAAGACATGTTAGGGAGAGAAGGAAAGAGAGATAGA]
consensusID : consensus_7117#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 643 fasta sequence
[CCGCCCACGCGTCCGTGTCGTTACCGTACCGTGTGTGTCTCGTAAACTCGTAACTGTTGCGAACAAAATGGCCATGTCGGTGCTGCGTACCTTTACCCGCAATATGGCCACCGCTGCCAAGATTAACAATGTGGTCGTCGTGGGCGGTGGGCTGATGGGTTCCGGCATCGCACAGGTTGCTGCGGCCACGGGCCACAATGTGACGCTGGTCGAGATGAACGATGCGCTCGTGGAGAAGGCGATCGGTGGCATCCGCAAAAGTCTGGAGCGGGTGGCCAAAAAGCAGTACAAGGACGATGCCGCCAAGGGCCAACAGTTTGTCGACGGCACGTTGGCAAAGATCGGTGGCGCCACCAAGCCGGAGGTGGCCGTGGAGGGTGCGGACCTGGTCGTGGAAGCGATCGTCGAGCGGATGGACGTGAAGCACGCGCTGTTCGGCAAGCTGGACGAGGCGGCCCCCGCCCACACCATCTTTGCCAGCAACACGTCCTCGCTGTCGATTGCCGAGAATTGGGTCGGTGACGAAGCGGGCAGGATTCGGGTTCGGTGGGCTGCACTTCTTCAACCCCGTGCCGGTCATGAAGCTGCTCGAGATCATCCGCACCGACCGGACGTCGGACGAAACGTTCCAGGCGCTGCAGGC]
[+] EMBL BM584752 [CCGCCCACGCGTCCGTGTCGTTACCGTACCGTGTGTGTCTCGTAAACTCGTAACTGTTGCGAACAAAATGGCCATGTCGGTGCTGCGTACCTTTACCCGCAATATGGCCACCGCTGCCAAGATTAACAATGTGGTCGTCGTGGGCGGTGGGCTGATGGGTTCCGGCATCGCACAGGTTGCTGCGGCCACGGGCCACAATGTGACGCTGGTCGAGATGAACGATGCGCTCGTGGAGAAGGCGATCGGTGGCATCCGCAAAAGTCTGGAGCGGGTGGCCAAAAAGCAGTACAAGGACGATGCCGCCAAGGGCCAACAGTTTGTCGACGGCACGTTGGCAAAGATCGGTGGCGCCACCAAGCCGGAGGTGGCCGTGGAGGGTGCGGACCTGGTCGTGGAAGCGATCGTCGAGCGGATGGACGTGAAGCACGCGCTGTTCGGCAAGCTGGACGAGGCGGCCCCCGCCCACACCATCTTTGCCAGCAACACGTCCTCGCTGTCGATTGCCGAGAATTGGGTCGGTGACGAAGCGGGCAGGATTCGGGTTCGGTGGGCTGCACTTCTTCAACCCCGTGCCGGTCATGAAGCTGCTCGAGATCATCCGCACCGACCGGACGTCGGACGAAACGTTCCAGGCGCTGCAGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7117#0 CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGGCACAGAGTGGCACCGCCACA 60
consensus_7117#1 ------------------------------------------------------------
consensus_7117#0 ACGGGGAGCGCCCTGTCGTTTCGCTCGCAGATCTGCTTGACTTTCATACATTCGCAGGTA 120
consensus_7117#1 ------------------------------------------------------------
consensus_7117#0 ACTTGCTCAGCGCACGGAGCAACGGAGTGCAGTGAAAGAATCAGAGAAACAGAGAGAGAA 180
consensus_7117#1 ------------------------------------------------------------
consensus_7117#0 AAAAGTGAACCATAACAAACAAAACAAAAAATCCCACATCCACCCACCCACAGCCCTACT 240
consensus_7117#1 ------------------------------------------------------------
consensus_7117#0 GGTGGGTGCCGCACGAGCGGGCTTGAGAGGTAGGGGCGCGCGCGCGCTCGAAATTTCGCT 300
consensus_7117#1 ------------------------------------------------------------
consensus_7117#0 GTCACCGCGGGGCCCCCGCACGAGGTGGGGAGTCAGATCTTTGGTGGCGCGATTCGATTG 360
consensus_7117#1 ------------------------------------------------------------
consensus_7117#0 TGCGCCATTTGTGCGCTGGCCAGCAGCAGCAGCAGCAAACGTAAGACACAGTGAACACCC 420
consensus_7117#1 ------------------------------------------------------------
consensus_7117#0 CTGCCCCACGATCAAACCGCTCAAACGGGCGAAGTGTGCGCCCGCGAGACGAAGCGAAAA 480
consensus_7117#1 ------------------------------------------------------------
consensus_7117#0 GCAAATAGAAATCGAACCGTCCCGGGCGGTAAGCGGGGGTCGGGAGCACCCAAAAACAAC 540
consensus_7117#1 ------------------------------------------------------------
consensus_7117#0 AACAACAAAAAGGAGAACAATAATAATAACAACAACAACAACAACGAGTTACTTCCGTGC 600
consensus_7117#1 ------------------------------------------------------------
consensus_7117#0 TGCCGAATTTCGAAGCAGTAGCCAGCAACAGAATGAAGGTGTTACGGGAGAAGATATCGA 660
consensus_7117#1 ------------------------------------------------------------
consensus_7117#0 AAATGGCTGGAGGAGTGCAGCAAGCCATCGTGTGGTTTAAAGCCGGCGGCATCGTCAGCC 720
consensus_7117#1 ------------------------------------------------------------
consensus_7117#0 CGATGCTGCTCATCTACGTACTTCACATGCTCTGGCCCGAGTTTCGCCCGTTCAGCATAC 780
consensus_7117#1 ------------------------------------------------------------
consensus_7117#0 TGTTTGTGATTGCGATCGGGTTCCTGTGGGACCGGCCGGCCGGCCAGCAAGTGGCGGCCC 840
consensus_7117#1 ------------------------------------------------------------
consensus_7117#0 CCTCCGTAACCGCCGGCTCCCCGCTGGCCGAGCTCGGGGCGAAGGTGTGGGCGCTGCGCA 900
consensus_7117#1 --------------------CCGCCCAC-GCGTCCGTGTCGTTACCGT----ACCGTGTG 35
**** * * * ** * ** ** * * *
consensus_7117#0 CGACCCGCCCGCTCAGCATGGTGGCGGGCAGTGTGGCC--GGCTGCCTCACCTACATCTA 958
consensus_7117#1 TGTCTCGTAAACTCGTAACTGTTGCGAACAAAATGGCCATGTCGGTGCTGCGTACCTTTA 95
* * ** *** * ** *** ** ***** * * * * *** * **
consensus_7117#0 CCTGGTGTGCTACGTGCTGCCCCTGTGGCTGTCGTTGGGCGTCGCCGGGCTGGTCGTGTG 1018
consensus_7117#1 CCCGCAATATGGC-CACCGCTGCCAAGATTAACAATGTG-GTCGTCGTG--GGCGGTGGG 151
** * * * * ** * * * * ** * **** ** * ** *** *
consensus_7117#0 CTGGGATCGGTTCGGCGTGCCCGGTGGTCCGCTCAGCATTGCGCCGAGTTTGCACGATAC 1078
consensus_7117#1 CT--GATGGGTTC--------CGGCA--TCGCACAGGTT---GCTGCGGCCACGGGCCAC 196
** *** ***** *** *** *** * ** * * * * **
consensus_7117#0 GCTGCAGCAGGAGCAGCAGGAAATGGACGAGTTTGTGCCGGAGCTGACGGAGGTGAGCCG 1138
consensus_7117#1 AATGTGAC----GCTGGTCGAGATGAACGA---TGCGCTCG---TGGAGAAGGCGATCGG 246
** * ** * ** *** **** ** ** * ** * *** ** * *
consensus_7117#0 CGTGCTGCTGCAAGGGTCGGTGAGCAGGGCGCGGACACGACACCGCTCGCCGACGGGTTC 1198
consensus_7117#1 TG-GCATCCGCAAAAGTCTG-GAGCGGG---TGGCCAAAAAGCAGTACAAGGACGATGCC 301
* ** * **** *** * **** ** ** ** * * * * **** *
consensus_7117#0 GCCGCAGCGGCCGGTGGCCGCGGGAACAGCGCGGAGGAGGACGAGGAGCAGTACCTGCGG 1258
consensus_7117#1 GC--CAAGGGCCAACAGTT-TGTCGACGGCACGTTGG----CAAAGATCGGTG-----GC 349
** ** **** * * ** ** ** ** * * ** * ** *
consensus_7117#0 ACGCTCATCCCGGAGGCGACCAGCAACGATTTCGAGTCGGCCGAGCTGAGCGGCTCCAGC 1318
consensus_7117#1 GCCACCAAGCCGGAGGTGGCCGTGGAGGGTGCGGACCTGGTCGTGG-AAGCGATCGTCG- 407
* ** ******* * ** * * * ** ** ** * **** *
consensus_7117#0 AGCGACGAGCTGTTCTGCCCCGAGGGCCCGGCGGTGCGGA--AGGCGGGTCGGGCGCACG 1376
consensus_7117#1 AGCGGATGGACGTGAAGCACGCGCTGTTCGGCAAGCTGGACGAGGCGGCCCCCGCCCACA 467
**** * ** ** * * **** *** ****** * ** ***
consensus_7117#0 GCCGGCCGGGCGAGCAGCAGCCGATCGAGTTCAAGAGCAGCCACTTTAA-CGCGAAC--A 1433
consensus_7117#1 -CCATCTTTGCCAGCAACACGTCCTCGCTGTCGATTGCCGAGAATTGGGTCGGTGACGAA 526
** * ** **** ** *** ** * ** * * ** ** ** *
consensus_7117#0 GCTCGTCCGACTCGGACGACAACATGTCGCGGGGGCTCAACTTTAACGACGACGAGGACG 1493
consensus_7117#1 GCGGGCAGGATTCGGGTT-CGGTGGGCTGCACTTCTTCAACCCCG-TGCCGGTCATGAAG 584
** * ** **** * * ** ***** * ** * ** *
consensus_7117#0 ACGCGGACGGCGCGTCCCGGCGACCGGCGGCCAAAGGGAGCAGCAGCAGCAGCAGCAGGC 1553
consensus_7117#1 CTGCTCGAGATCATCCGCACCGACCGGACGTCGGACGAAAC-GTTCCAGGCGCTGCAGGC 643
** * * * ******* * * * * * * * *** ** ******
consensus_7117#0 AGCAGCCGACTGGTGAGGCGATGCTGATGATGAGCGCCACCAGCCTGGCTAGCAACGTGC 1613
consensus_7117#1 ------------------------------------------------------------
consensus_7117#0 TGGTCGACACGGTGTACCGGCGTCTGCTGGACGCGGGCGCCCTGCACCAGCAGCAGCAGC 1673
consensus_7117#1 ------------------------------------------------------------
consensus_7117#0 CATCGCCGCACCATAGTATTCTTCAGTCGGTTGCCTCGCTCGGCAGCACGATACAGGCGC 1733
consensus_7117#1 ------------------------------------------------------------
consensus_7117#0 TCCGGGGGCAGACGGTGCAGGAGGAGGGCACCGATGACGAATCGACCGACGCGGACGAGG 1793
consensus_7117#1 ------------------------------------------------------------
consensus_7117#0 ACAGTGAGTTTGAAATGCTCAACTCGGAGGAGCTGAACAACTTATGAGCACGTGGTGGCG 1853
consensus_7117#1 ------------------------------------------------------------
consensus_7117#0 CTTCCGAGGATTGTTAGAAGACATGTTAGGGAGAGAAGGAAAGAGAGATAGA 1905
consensus_7117#1 ----------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||