cluster # 7118

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Anopheles gambiae
cluster # 7118 cluster # 7118 Sequences # 6 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7118#0 length = 671 sequences # 3
consensus_7118#1 length = 392 sequences # 1

consensus_7118#2 length = 270 sequences # 1
consensus_7118#3 length = 160 sequences # 1

consensusID : consensus_7118#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 671
fasta sequence

                              [AAGCTCTCATCTCCTATAATGATGCTACGGATATTAGTAATCGGTGGGAGGAAACGGTTTTTTTGGGGCGCAAAAATATATACATAAAACAAAAAAGCAAGCAAAAAAATCCAAACTATATACACCGCAA--ACACACACACACACCTACATAAACACAGGCG--GTGTGTGTGTGTGGGTATACATAGCAGTTAACCTTCAGCAAACGCCAGTTATAAACGCGCCCGCGCTTGCCGTAGGGATTCGTTACGATCTTTGTTACACACGTGTTTCGTTACCTTCTTCTGCGCCATGACCTCGTCTACTTCTTCTTCTTCTTCTTAATCTTCTTCTTCATGCACACACACACAGAGTACACATGTTAATACAAGTAACTTGCTTCACGGTTGAAATGCATGCTTAGGAAAGAGCAAGAAAAGGATGAGAAGGTGGAAAAGAAACGTGGTTTTGTTTAAGGTTTTTGTTTCTGTGGCTCCTAGGCTCTAAAATGCAGTAGTGAACGCGGGAGTTTTTCCATCCCTTAGTGCGCTAGAGAGAAGAGAAGCAGGAGGGGGAGAAGAGTAGTAGCATTCAGTTGGTGTTTGAATTTGCTGTGTGTGTGTATATATCTTGCAATATATCAGAGAGAGATTGCACACCAGCTTGTGGACGTTCCTGTGTTGTGATTACNAATC]

[+] EMBL BX614379             [AAGCTCTCATCTCCTATAATGATGCTACGGATATTAGTAATCGGTGGGAGGAAACGGTTTTTTTGGGGCGCAAAAATATATACATAAAACAAAAAAGCAAGCAAAAAAATCCAAACTATATACACCGCAAACACACACACACACACCTACATAAACACAGGCGGTGTGTGTGTGTGTGGGTATACATAGCAGTTAACCTTCAGCAAACGCCAGTTATAAACGCGCCCGCGCTTGCCGTAGGGATTCGTTACGATCTTTGTTACACACGTGTTTCGTTACCTTCTTCTGCGCCATGACCTCGTCTACTTCTTCTTCTTCTTCTTAATCTTCTTCTTCATGCACACACACACAGAGTACACATGTTAATACAAGTAACTTGCTTCACGGTTGAAATGCATGCTTAGGAAAGAGCAAGAAAAGGATGAGAAGG                                                                                                                                                                                                                                                     ]
[+] EMBL BX628679             [AAGCTCTCATCTCCTATAATGATGCTACGGATATTAGTAATCGGTGGGAGGAAACGGTTTTTTTGGGGCGCAAAAATATATACATAAAACAAAAAAGCAAGCAAAAAAATCCAAACTATATACACCGCAA  ACACACACACACACCTACATAAACACAGGCG  GTGTGTGTGTGTGGGTATACATAGCAGTTAACCTTCAGCAAACGCCAGTTATAAACGCGCCCGCGCTTGCCGTAGGGATTCGTTACGATCTTTGTTACACACGTGTTTCGTTACCTTCTTCTACGCCATGACCTCTTCTAC                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BX626700             [                                                                                      AAACAAAAAAGCAAGCAAAAAAATCCAAACTATATACACCGCAA    ACACACACACACCTACATAAACACAGGCG  GTGTGTGTGTGTGGGTATACATAGCAGTTAACCTTCAGCAAACGCCAGGTATAAACGCGCCCGCGCTTGCCGTAGGGATTCGTTACGATCTTTGTTACACACGTGTTTCGTTACCTTCTTCTGCGCCATGACCTCGTCTACTTCTTCTTCTTCTTCT   TCTTC  ATGCA  CACACACACACAGAGTACACATGTTAATACAAGTAACTTGCTTCACGGTTGAAATGCATGCTTAGGAAAGAGCAAGAAAAAGATGAGAAGGTGGAAAAGAAACGTGGTTTTGTTTAAGGTTTTTGTTTCTGTGGCTCCTAGGCTCTAAAATGCAGTAGTGAACGCGGGAGTTTTTCCATCCCTTAGTGCGCTAGAGAGAAGAGAAGCAGGAGGGGGAGAAGAGTAGTAGCATTCAGTTGGTGTTTGAATTTGCTGTGTGTGTGTATATATCTTGCAATATATCAGAGAGAGATTGCACACCAGCTTGTGGACGTTCCTGTGTTGTGATTACNAATC]




>consensus_7118#0
AAGCTCTCATCTCCTATAATGATGCTACGGATATTAGTAATCGGTGGGAGGAAACGGTTT
TTTTGGGGCGCAAAAATATATACATAAAACAAAAAAGCAAGCAAAAAAATCCAAACTATA
TACACCGCAAACACACACACACACCTACATAAACACAGGCGGTGTGTGTGTGTGGGTATA
CATAGCAGTTAACCTTCAGCAAACGCCAGTTATAAACGCGCCCGCGCTTGCCGTAGGGAT
TCGTTACGATCTTTGTTACACACGTGTTTCGTTACCTTCTTCTGCGCCATGACCTCGTCT
ACTTCTTCTTCTTCTTCTTAATCTTCTTCTTCATGCACACACACACAGAGTACACATGTT
AATACAAGTAACTTGCTTCACGGTTGAAATGCATGCTTAGGAAAGAGCAAGAAAAGGATG
AGAAGGTGGAAAAGAAACGTGGTTTTGTTTAAGGTTTTTGTTTCTGTGGCTCCTAGGCTC
TAAAATGCAGTAGTGAACGCGGGAGTTTTTCCATCCCTTAGTGCGCTAGAGAGAAGAGAA
GCAGGAGGGGGAGAAGAGTAGTAGCATTCAGTTGGTGTTTGAATTTGCTGTGTGTGTGTA
TATATCTTGCAATATATCAGAGAGAGATTGCACACCAGCTTGTGGACGTTCCTGTGTTGT
GATTACNAATC

consensusID : consensus_7118#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 392
fasta sequence

                              [AAGCTCTCATCTCCTATAATGATGCTACGGATATTAGTAATCGGTGGGAGGAAACGGTTTCTCGGGGCGCAAAAATATTTNCCTAAAACAAAAAAGCAAGCCAAAAAATCCCAAACTATATACACCGGGAAACACACACACANCACCTACATTATAAACACAGGGCGGTGTGTGTAGATGTAGGGTATACATAGCAGTGTAACACTTCAGCAAAACGCCNGNTTATAAACGCGCCCCGCCGGCTTGTNCCGNANGGGAATATCCGGTATACNGGAATACTATNTGNGTGTAAACAGCCACAGGTTGGTTTTACCGGGTGAACCCTATCTNTCCTACCGGCCCATGTGACACATACCTGTCTTACATATTCNTTTCATTCATTCCTTTCTTCT]

[+] EMBL AL932652             [AAGCTCTCATCTCCTATAATGATGCTACGGATATTAGTAATCGGTGGGAGGAAACGGTTTCTCGGGGCGCAAAAATATTTNCCTAAAACAAAAAAGCAAGCCAAAAAATCCCAAACTATATACACCGGGAAACACACACACANCACCTACATTATAAACACAGGGCGGTGTGTGTAGATGTAGGGTATACATAGCAGTGTAACACTTCAGCAAAACGCCNGNTTATAAACGCGCCCCGCCGGCTTGTNCCGNANGGGAATATCCGGTATACNGGAATACTATNTGNGTGTAAACAGCCACAGGTTGGTTTTACCGGGTGAACCCTATCTNTCCTACCGGCCCATGTGACACATACCTGTCTTACATATTCNTTTCATTCATTCCTTTCTTCT]




>consensus_7118#1
AAGCTCTCATCTCCTATAATGATGCTACGGATATTAGTAATCGGTGGGAGGAAACGGTTT
CTCGGGGCGCAAAAATATTTNCCTAAAACAAAAAAGCAAGCCAAAAAATCCCAAACTATA
TACACCGGGAAACACACACACANCACCTACATTATAAACACAGGGCGGTGTGTGTAGATG
TAGGGTATACATAGCAGTGTAACACTTCAGCAAAACGCCNGNTTATAAACGCGCCCCGCC
GGCTTGTNCCGNANGGGAATATCCGGTATACNGGAATACTATNTGNGTGTAAACAGCCAC
AGGTTGGTTTTACCGGGTGAACCCTATCTNTCCTACCGGCCCATGTGACACATACCTGTC
TTACATATTCNTTTCATTCATTCCTTTCTTCT

consensusID : consensus_7118#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 270
fasta sequence

                              [AAGCTCTCATCTCCTATAATGATGCTACGGATATTAGTAATCGGTGGGAGGAAACGGTTTTTTTGGGGCGCAAAAATATATACATAAAACAAAAAAGCAAGCAAAAAAATCCAAACTATATAGCAGTTAACCTTCAGCAAACGCCAGTTATAAACGCGCCCGCGCTTGCCGTAGGGATTCGTTACGATCTTTGTTACACACGTGTTTCGTTACCTTCTTCTGCGCCATGACCTCGTCTACTTCTTCTTCTTCTTCTTAATCTTCTTCTTC]

[+] EMBL BX614632             [AAGCTCTCATCTCCTATAATGATGCTACGGATATTAGTAATCGGTGGGAGGAAACGGTTTTTTTGGGGCGCAAAAATATATACATAAAACAAAAAAGCAAGCAAAAAAATCCAAACTATATAGCAGTTAACCTTCAGCAAACGCCAGTTATAAACGCGCCCGCGCTTGCCGTAGGGATTCGTTACGATCTTTGTTACACACGTGTTTCGTTACCTTCTTCTGCGCCATGACCTCGTCTACTTCTTCTTCTTCTTCTTAATCTTCTTCTTC]




>consensus_7118#2
AAGCTCTCATCTCCTATAATGATGCTACGGATATTAGTAATCGGTGGGAGGAAACGGTTT
TTTTGGGGCGCAAAAATATATACATAAAACAAAAAAGCAAGCAAAAAAATCCAAACTATA
TAGCAGTTAACCTTCAGCAAACGCCAGTTATAAACGCGCCCGCGCTTGCCGTAGGGATTC
GTTACGATCTTTGTTACACACGTGTTTCGTTACCTTCTTCTGCGCCATGACCTCGTCTAC
TTCTTCTTCTTCTTCTTAATCTTCTTCTTC

consensusID : consensus_7118#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 160
fasta sequence

                              [AAGAAAAGGATGAGAAGGGGGAAAAGAAACGTGGTTTCGTTGGGGTTTTTGTTTCTGTGGCTTTTAGGTTTTAAAATGCAGTAGAGAACGTGGGAGTTTTTCTATTTTTTAGTGCGTTAGAGAGAAGAGAAGCAGGAGGAGGAGAAGAGTAGTAGCATTC]

[+] EMBL BX618142             [AAGAAAAGGATGAGAAGGGGGAAAAGAAACGTGGTTTCGTTGGGGTTTTTGTTTCTGTGGCTTTTAGGTTTTAAAATGCAGTAGAGAACGTGGGAGTTTTTCTATTTTTTAGTGCGTTAGAGAGAAGAGAAGCAGGAGGAGGAGAAGAGTAGTAGCATTC]




>consensus_7118#3
AAGAAAAGGATGAGAAGGGGGAAAAGAAACGTGGTTTCGTTGGGGTTTTTGTTTCTGTGG
CTTTTAGGTTTTAAAATGCAGTAGAGAACGTGGGAGTTTTTCTATTTTTTAGTGCGTTAG
AGAGAAGAGAAGCAGGAGGAGGAGAAGAGTAGTAGCATTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7118#0      AAGCTCTCATCTCCTATAATGATGCTACGGATATTAGTAATCGGTGGGAGGAAACGGTTT 60
consensus_7118#3      ------------------------------------------------------------
consensus_7118#2      ------------------------------------------------------------
consensus_7118#1      ------------------------------------------------------------
                                                                                  

consensus_7118#0      TTTTGGGGCGCAAAAATATATACATAAAACAAAAAAGCAAGCAAAAAAATCCAAACTATA 120
consensus_7118#3      ------------------------------------------------------------
consensus_7118#2      ------------------------------------------------------------
consensus_7118#1      ------------------------------------------------------------
                                                                                  

consensus_7118#0      TACACCGCAAACACACACACACACCTACATAAACACAGGCGGTGTGTGTGTGTGGGTATA 180
consensus_7118#3      ------------------------------------------------------------
consensus_7118#2      ------------------------------------------------------------
consensus_7118#1      ------------------------------------------------------------
                                                                                  

consensus_7118#0      CATAGCAGTTAACCTTCAGCAAACGCCAGTTATAAACGCGCCCGCGCTTGCCGTAGGGAT 240
consensus_7118#3      ------------------------------------------------------------
consensus_7118#2      ------------------------------------------------------------
consensus_7118#1      ------------------------------------------------------------
                                                                                  

consensus_7118#0      TCGTTACGATCTTTGTTACACACGTGTTTCGTTACCTTCTTCTGCGCCATGACCTCGTCT 300
consensus_7118#3      ------------------------------------------------------------
consensus_7118#2      ------------------------------------------------------------
consensus_7118#1      ------------------------------------------------------------
                                                                                  

consensus_7118#0      ACTTCTTCTTCTTCTTCTTAATCTTCTTCTTCATGCACACACACACAGAGTACACATGTT 360
consensus_7118#3      ------------------------------------------------------------
consensus_7118#2      ------------------------------------------------------------
consensus_7118#1      ------------------------------------------------------------
                                                                                  

consensus_7118#0      AATACAAGTAACTTGCTTCACGGTTGAAATGCATGCTTAGGAAAGAGCAAGAAAAGGATG 420
consensus_7118#3      ------------------------------------------------AAGAAAAGGATG 12
consensus_7118#2      ---------------------------AAGCTCTCATCTCCTATAATGATGCTACGGATA 33
consensus_7118#1      ---------------------------AAGCTCTCATCTCCTATAATGATGCTACGGATA 33
                                                                      * *  * **** 

consensus_7118#0      --AGAAGGTGGAAAAGAAACGTGGTTTTGTTTAAGGTTTTTGTTTCTGTGGCTCCTAGGC 478
consensus_7118#3      --AGAAGGGGGAAAAGAAACGTGGTTTCGTT-GGGGTTTTTGTTTCTGTGGCTTTTAGGT 69
consensus_7118#2      TTAGTAATCGGTGGGAGGAAACGGTTTTTTT-GGGGCGCAAAAATATATA---CATAAAA 89
consensus_7118#1      TTAGTAATCGGTGGGAGGAAACGGTTTC--TCGGGGCGCAAAAATATTTN---CCTAAAA 88
                        ** *   **       *   *****   *   **        * * *      **   

consensus_7118#0      TCTAAAATGCAGT-AGTGAACGCGGGAGTTTTT-----------CCATCCCTTAGTG--- 523
consensus_7118#3      TTTAAAATGCAGT-AGAGAACGTGGGAGTTTTT-----------CTATTTTTTAGTG--- 114
consensus_7118#2      CAAAAAAGCAAGC-AAAAAAATCCAAACTATATA------GCAGTTAACCTTCAGCAA-- 140
consensus_7118#1      CAAAAAAGCAAGCCAAAAAATCCCAAACTATATACACCGGGAAACACACACACANCACCT 148
                         ****   **  *   **      * * * *                    *      

consensus_7118#0      -CGCTAGAGAGA-AGAGAAGCAGGAGGGGGAGAAGAG--TA-GTAGCATT------CAGT 572
consensus_7118#3      -CGTTAGAGAGA-AGAGAAGCAGGAGGAGGAGAAGAG--TA-GTAGCATT------C--- 160
consensus_7118#2      ACGCCAGTTATA-AACGCGCCCGCGCTTGCCGTAGGGATTC-GTTACGAT------CTTT 192
consensus_7118#1      ACATTATAAACACAGGGCGGTGTGTGTAGATGTAGGGTATACATAGCAGTGTAACACTTC 208
                       *   *   * * *  *           *  * ** *  *   *  *  *      *   

consensus_7118#0      TGGTGTTTGAATTTGCTGTGTGTGTGTATATATCTTGCAATATATCAGAGAGAGATTGCA 632
consensus_7118#3      ------------------------------------------------------------
consensus_7118#2      GTTACACACGTGTTTCGTTACCTTCTTCTGCGCCATGACCTCGTCTACTTCTTCTTCTTC 252
consensus_7118#1      AGCAAAACGCCNGNTTATAAACGCGCCCCGCCGGCTTGTNCCGNANGGGAATATCCGGTA 268
                                                                                  

consensus_7118#0      CACCAGCTTGTGGACGTTCCTGTGTTGTGATTACNAATC--------------------- 671
consensus_7118#3      ------------------------------------------------------------
consensus_7118#2      TTCTTAATCTTCTTCTTC------------------------------------------ 270
consensus_7118#1      TACNGGAATACTATNTGNGTGTAAACAGCCACAGGTTGGTTTTACCGGGTGAACCCTATC 328
                                                                                  

consensus_7118#0      ------------------------------------------------------------
consensus_7118#3      ------------------------------------------------------------
consensus_7118#2      ------------------------------------------------------------
consensus_7118#1      TNTCCTACCGGCCCATGTGACACATACCTGTCTTACATATTCNTTTCATTCATTCCTTTC 388
                                                                                  

consensus_7118#0      ----
consensus_7118#3      ----
consensus_7118#2      ----
consensus_7118#1      TTCT 392