cluster # 712

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Anopheles gambiae
cluster # 712 cluster # 712 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_712#0 length = 693 sequences # 1

consensus_712#1 length = 428 sequences # 1

consensusID : consensus_712#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 693
fasta sequence

                              [CCGGCTGCCTTCGCGACCCTCGCCCAACTGAAGGCCAAACTGTGCAACGAGTACCAAATACCGGTGGCGGTACAACGCTGGCGTTGTGACGATCAACCGCTAGACGATGACACTAGAACACTCTACGATTACGGTATACAGACGAGCGATCGGACGCTGTTTGTGTACATTGTACAGCCGGCCATACCAGCCAAAGATCCTAAGCCACCGCTGCTGAAGCAGCAAAACTTTAGCAGTGCCGAGATCAAGCTCCTGTCCGTATCGTCCGAATCGGACGGTGAGCATTCGGACACACAGAACGACGAAACTGTGCTCGGTGCTATAGCACTCCCTAAAGCTGCACCAAGAACTACTGTTACTGTGCCAAAGTGCGAAATCACAGTGGAGAATTCGTCCAGCGCCAGTGAGCCCGGATGGGCCTGCCCAATGTGCACCCTGATAAACGCACTCGATCGTCCCGGGTGTGCGGCATGTTCCGAGGCCCGACCAAGCCACCTGCGGCCTCCGTCTCCCGTCGAACAGATCACCGTGACGCCGGAAGATTTGACCCGCTATCTCGATCAGCAGCCACCGCTTGCGCCGGAACGCAGGACAAAAGAGCCGACAATGCACGTGCAGCTGCGCGTCCCACCGATCGAGACGCGGAACGATCTGAATCGCATCTCGTCCAATCGCAAATCGTCCGACATCTTT]

[+] EMBL BM646022             [CCGGCTGCCTTCGCGACCCTCGCCCAACTGAAGGCCAAACTGTGCAACGAGTACCAAATACCGGTGGCGGTACAACGCTGGCGTTGTGACGATCAACCGCTAGACGATGACACTAGAACACTCTACGATTACGGTATACAGACGAGCGATCGGACGCTGTTTGTGTACATTGTACAGCCGGCCATACCAGCCAAAGATCCTAAGCCACCGCTGCTGAAGCAGCAAAACTTTAGCAGTGCCGAGATCAAGCTCCTGTCCGTATCGTCCGAATCGGACGGTGAGCATTCGGACACACAGAACGACGAAACTGTGCTCGGTGCTATAGCACTCCCTAAAGCTGCACCAAGAACTACTGTTACTGTGCCAAAGTGCGAAATCACAGTGGAGAATTCGTCCAGCGCCAGTGAGCCCGGATGGGCCTGCCCAATGTGCACCCTGATAAACGCACTCGATCGTCCCGGGTGTGCGGCATGTTCCGAGGCCCGACCAAGCCACCTGCGGCCTCCGTCTCCCGTCGAACAGATCACCGTGACGCCGGAAGATTTGACCCGCTATCTCGATCAGCAGCCACCGCTTGCGCCGGAACGCAGGACAAAAGAGCCGACAATGCACGTGCAGCTGCGCGTCCCACCGATCGAGACGCGGAACGATCTGAATCGCATCTCGTCCAATCGCAAATCGTCCGACATCTTT]




>consensus_712#0
CCGGCTGCCTTCGCGACCCTCGCCCAACTGAAGGCCAAACTGTGCAACGAGTACCAAATA
CCGGTGGCGGTACAACGCTGGCGTTGTGACGATCAACCGCTAGACGATGACACTAGAACA
CTCTACGATTACGGTATACAGACGAGCGATCGGACGCTGTTTGTGTACATTGTACAGCCG
GCCATACCAGCCAAAGATCCTAAGCCACCGCTGCTGAAGCAGCAAAACTTTAGCAGTGCC
GAGATCAAGCTCCTGTCCGTATCGTCCGAATCGGACGGTGAGCATTCGGACACACAGAAC
GACGAAACTGTGCTCGGTGCTATAGCACTCCCTAAAGCTGCACCAAGAACTACTGTTACT
GTGCCAAAGTGCGAAATCACAGTGGAGAATTCGTCCAGCGCCAGTGAGCCCGGATGGGCC
TGCCCAATGTGCACCCTGATAAACGCACTCGATCGTCCCGGGTGTGCGGCATGTTCCGAG
GCCCGACCAAGCCACCTGCGGCCTCCGTCTCCCGTCGAACAGATCACCGTGACGCCGGAA
GATTTGACCCGCTATCTCGATCAGCAGCCACCGCTTGCGCCGGAACGCAGGACAAAAGAG
CCGACAATGCACGTGCAGCTGCGCGTCCCACCGATCGAGACGCGGAACGATCTGAATCGC
ATCTCGTCCAATCGCAAATCGTCCGACATCTTT

consensusID : consensus_712#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 428
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGACGAAACTGTGCTCGGTGCTACGGCACTCCCTAAAGCTGCACCAAGAACTGCGGTTACTGTGCCAAAATGCGAAATCACAGTGGAGAATTCGTCCAGCGCCAGTGAGCCCGGATGGGCCTGCCCTATGTGCACCCTGATAAACCCACTCGATCGTCCCGGGTGTGCGGCATGTTCCGAGGCCCGACCAAGCCACCTCCGCCCTCCGTCTCCCGTCGAACAGATCACCGTGACGCCGGAAGATTTGACCCGCTATCTCGATCAGCAGCCACCGCTCGCGCCGGAACGCAGAACCAAAGAGCCGACGATGCACGTGCAGCTGCGCGTCCCACCGATCGAGACGCGGAACGATCTGAATCGCATCTCGTCCAATCGCAA]

[+] EMBL BM619162             [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGACGAAACTGTGCTCGGTGCTACGGCACTCCCTAAAGCTGCACCAAGAACTGCGGTTACTGTGCCAAAATGCGAAATCACAGTGGAGAATTCGTCCAGCGCCAGTGAGCCCGGATGGGCCTGCCCTATGTGCACCCTGATAAACCCACTCGATCGTCCCGGGTGTGCGGCATGTTCCGAGGCCCGACCAAGCCACCTCCGCCCTCCGTCTCCCGTCGAACAGATCACCGTGACGCCGGAAGATTTGACCCGCTATCTCGATCAGCAGCCACCGCTCGCGCCGGAACGCAGAACCAAAGAGCCGACGATGCACGTGCAGCTGCGCGTCCCACCGATCGAGACGCGGAACGATCTGAATCGCATCTCGTCCAATCGCAA]




>consensus_712#1
CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGACGAAACT
GTGCTCGGTGCTACGGCACTCCCTAAAGCTGCACCAAGAACTGCGGTTACTGTGCCAAAA
TGCGAAATCACAGTGGAGAATTCGTCCAGCGCCAGTGAGCCCGGATGGGCCTGCCCTATG
TGCACCCTGATAAACCCACTCGATCGTCCCGGGTGTGCGGCATGTTCCGAGGCCCGACCA
AGCCACCTCCGCCCTCCGTCTCCCGTCGAACAGATCACCGTGACGCCGGAAGATTTGACC
CGCTATCTCGATCAGCAGCCACCGCTCGCGCCGGAACGCAGAACCAAAGAGCCGACGATG
CACGTGCAGCTGCGCGTCCCACCGATCGAGACGCGGAACGATCTGAATCGCATCTCGTCC
AATCGCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_712#0      CCGGCTGCCTTCGCGACCCTCGCCCAACTGAAGGCCAAACTGTGCAACGAGTACCAAATA 60
consensus_712#1      ------------------------------------------------------------
                                                                                 

consensus_712#0      CCGGTGGCGGTACAACGCTGGCGTTGTGACGATCAACCGCTAGACGATGACACTAGAACA 120
consensus_712#1      ------------------------------------------------------------
                                                                                 

consensus_712#0      CTCTACGATTACGGTATACAGACGAGCGATCGGACGCTGTTTGTGTACATTGTACAGCCG 180
consensus_712#1      ------------------------------------------------------------
                                                                                 

consensus_712#0      GCCATACCAGCCAAAGATCCTAAGCCACCGCTGCTGAAGCAGCAAAACTTTAGCAGTGCC 240
consensus_712#1      ------------------------------------------------------------
                                                                                 

consensus_712#0      GAGATCAAGCTCCTGTCCGTATCGTCCGAATCGGACGGTGA-GCATTCGGACACACAGAA 299
consensus_712#1      ----------CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCC 50
                                *     **  **  ** *  **  **   * ** * **  *** *    

consensus_712#0      CGACGAAACTGTGCTCGGTGCTATAGCACTCCCTAAAGCTGCACCAAGAACTACTGTTAC 359
consensus_712#1      GGACGAAACTGTGCTCGGTGCTACGGCACTCCCTAAAGCTGCACCAAGAACTGCGGTTAC 110
                      **********************  *************************** * *****

consensus_712#0      TGTGCCAAAGTGCGAAATCACAGTGGAGAATTCGTCCAGCGCCAGTGAGCCCGGATGGGC 419
consensus_712#1      TGTGCCAAAATGCGAAATCACAGTGGAGAATTCGTCCAGCGCCAGTGAGCCCGGATGGGC 170
                     ********* **************************************************

consensus_712#0      CTGCCCAATGTGCACCCTGATAAACGCACTCGATCGTCCCGGGTGTGCGGCATGTTCCGA 479
consensus_712#1      CTGCCCTATGTGCACCCTGATAAACCCACTCGATCGTCCCGGGTGTGCGGCATGTTCCGA 230
                     ****** ****************** **********************************

consensus_712#0      GGCCCGACCAAGCCACCTGCGGCCTCCGTCTCCCGTCGAACAGATCACCGTGACGCCGGA 539
consensus_712#1      GGCCCGACCAAGCCACCTCCGCCCTCCGTCTCCCGTCGAACAGATCACCGTGACGCCGGA 290
                     ****************** ** **************************************

consensus_712#0      AGATTTGACCCGCTATCTCGATCAGCAGCCACCGCTTGCGCCGGAACGCAGGACAAAAGA 599
consensus_712#1      AGATTTGACCCGCTATCTCGATCAGCAGCCACCGCTCGCGCCGGAACGCAGAACCAAAGA 350
                     ************************************ ************** ** *****

consensus_712#0      GCCGACAATGCACGTGCAGCTGCGCGTCCCACCGATCGAGACGCGGAACGATCTGAATCG 659
consensus_712#1      GCCGACGATGCACGTGCAGCTGCGCGTCCCACCGATCGAGACGCGGAACGATCTGAATCG 410
                     ****** *****************************************************

consensus_712#0      CATCTCGTCCAATCGCAAATCGTCCGACATCTTT 693
consensus_712#1      CATCTCGTCCAATCGCAA---------------- 428
                     ******************