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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7126#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1621 fasta sequence
[CCGGTTCGCGATGCTAAAATTAACAACCGTCAATTCGCTGCGCTTCCGGCCTTTCGGTGGTGCGGTTCGGTGGCGTAGCGCTACCGCGCAACCAGCTGCTGACACGTCCGTCGATCCGGAGTGGGAGAACGCGCTGCCGTTTGAAAAGATTCCCGCACCGTCTTTACTCGGATTTCTGAAGGAATTTGGACCTTTTGGTAAATACAAGGATGGTAATCTGTACGATATCAACAAACGATTACGCGAGCTGTACGGTCCAATCTTGCGGATGAACGGTTCGTTTGGGAGGGAAGATTTGGTGATGACGTTCGTACCGGAAGACTTTGAGAAGGTACTGCGCTCGGAGGGTCCCTGGCCAAGGCGTACGGGGATGGATTCGTTCGTGTACTATCGCAAACAGCATCGTCCGGAGTACTTTAAGGGCTATGGCGGATTGCTGGCCGAACAAGGCGAAGACTGGCACAAGATGCGGACGATCGTCAATCCGATCATGATGCAGCCGAAGGTCATCAGGCAGTACGTGGACAAGGTCGATACAGTGGCCCGGGAGTTTATGGCAATTGTCCATGGTCTGTGCGATGAGAATCACGAGTTGCCGGCTGACTTTAACGAATGGTTGAACCGTTGGGCGTTCGAAACCATGGGTGTGCTGGTGCTGGACTCGCGGCTTGGTGTGCTGGACAAGGACCAAACACCCGAAGTTACCCATTTCATCGATCTAACGAAAGGGGCAGTCACCTTGTTCTATCAGCTTGATATACTACCATCGATATGGCGGAAGCTGAAAACACCTGCCTTTTACAGACTGATGCGTGCATTGGACGAGCTTTATCATTTAATTGCTGCCCGAATCGATGAAGCTGTAATAAGGATGGAAAAGAATCCAAGCGCTGATCAGGACACGTTGAGCATTCTGGAGAAACTGTTGAAGGTGGATCGTAATGCGGCCTTCACGATGTCGATGGACAGTTTGTTCGCTGGTGTTGATACGACCTCCTCAGGATCGACGGGAATTCTGTACTGTCTAGCCAAGAACCCTGAGAAGCAGGAGAAACTTCGTGCCGAGTTGCGGAAGATTATGCCCAACAAGGACAGTCCACTCACGCCGGATAGTATGAAGAATATGCCGTACCTTAGGGCTTGTATCAAGGAGAGCCTGCGCATGTATCCACCGACCTCGGGCAATGGTCGTTGTACCGGAAAAGACCTCGTTCTGCAAGGATATCGCGTTCCCAAAGGAATTCTCGTAGGAATGGGCCAGCTGGTACTGCAGCGAGAGGAAGGCTACTTTACCCGCCCGTCGGAGTTCATGCCGGAACGATGGCTTAGCGGGGAGGCCGCGGCCGGTTGTCCCAGTGCCAAGGAGGTTCATCCGTTCGTCTACCTGCCGTTCGGGTTCGGGGCCCGTTCCTGCATCGGTAAGCGGTTGGCAATGATGGAGATGGAGATACTGGTGTGTCGCATGGTGCGCAAGTATGATGTTGGTTGGAATTACGGCGAGCTGAAGTACAGAGCGACACTTGTCAACATACCTGCGAACGATCTAAAGTTCCAGCTGAAGGAAGTGAGCGATTGAGCAACTGCTTAGGTAAGGTACTAGTTGGTAAGGGATTACTGTTTT]
[+] EMBL BM637204 [CCGGTTCGCGATGCTAAAATTAACAACCGTCAATTCGCTGCGCTTCCGGCCTTTCGGTGGTGCGGTTCGGTGGCGTAGCGCTACCGCGCAACCAGCTGCTGACACGTCCGTCGATCCGGAGTGGGAGAACGCGCTGCCGTTTGAAAAGATTCCCGCACCGTCTTTACTCGGATTTCTGAAGGAATTTGGACCTTTTGGTAAATACAAGGATGGTAATCTGTACGATATCAACAAACGATTACGCGAGCTGTACGGTCCAATCTTGCGGATGAACGGTTCGTTTGGGAGGGAAGATTTGGTGATGACGTTCGTACCGGAAGACTTTGAGAAGGTACTGCGCTCGGAGGGTCCCTGGCCAAGGCGTACGGGGATGGATTCGTTCGTGTACTATCGCAAACAGCATCGTCCGGAGTACTTTAAGGGCTATGGCGGATTGCTGGCCGAACAAGGCGAAGACTGGCACAAGATGCGGACGATCGTCAATCCGATCATGATGCAGCCGAAGGTCATCAGGCAGTACGTGGACAAGGTCGATACAGTGGCCCGGGAGTTTATGGCAATTGTCCATGGTCTGTGCGATGAGAATCACGAGTTGCCGGCTGACTTTAACGAATGGTTGAA ]
[+] EMBL AY176048 [ TTAACAACCGTCAATTCGCTACGCTTCCGGCCTTTCGGTGGTGCGGTTCGGTGGCGTAGCGCTACCGCGCAACCAGCTGCTGACACGTCCGTCGATCCGGAGTGGGAGAACGCGCTACCGTTTGAAAAGATTCCCGCACCGTCGTTAATCGGATTTCTGAAGGAATTTGGCCCTTTTGGTAAATACAAGGATGGTAATCTGTACGATATCAACAAACGATTGCGCGAGCTGTACGGTCCAATCTTGCGGATGAACGGTTCGTTTGGGAGGGAAGATTTGGTGATGACGTTCGTACCGGAAGACTTTGAGAAGGTACTGCGCTCGGAGGGTCCCTGGCCAAGGCGTACGGGGATGGATTCGTTCGTGTACTATCGCAAACAGCATCGTCCGGAGTACTTTAAGGGCTATGGCGGGTTGCTGGCCGAACAAGGCGAAGACTGGCACAAGATGCGAACGATCGTCAATCCGATCATGATGCAGCCGAAGGTCATCAGGCAGTACGTGGACAAGGTCGATACAGTGGCCCGGGAGTTTATGGCAATTGTCCATGGTCTGCGCGATGAGAAGCAGGAGTTGCCGGCTGACTTTAACGAATGGTTGAACCGTTGGGCGTTCGAAACCATGGGTGTGCTGGTGCTGGACTCGCGGCTTGGTGTGCTGGACAAGGACCAAACACCCGAAGTTACCCATTTCATCGATCTAACGAAAGGGGCAGTCACCTTGTTCTATCAGCTTGATATACTACCATCGATATGGCGGAAGCTGAAAACACCTGCCTTTTACAGACTGATGCGTGCATTGGACGAGCTTTATCATTTAATTGCTGCCCGAATCGATGAAGCTGTAATAAGGATGGAAAAGAATCCAAGCGCTGATCAGGACACGTTGAGCATTCTGGAGAAACTGTTGAAGGTGGATCGTAATGCGGCCTTCACGATGTCGATGGACAGTTTGTTCGCTGGTGTTGATACGACCTCCTCAGGATCGACGGGAATTCTGTACTGTCTAGCCAAGAACCCTGAGAAGCAGGAGAAACTTCGTGCCGAGTTGCGGAAGATTATGCCCAACAAGGACAGTCCACTCACGCCGGATAATATGAAGAATATGCCGTACCTTAGGGCTTGTATCAAGGAGAGCCTGCGCATGTATCCACCGACCTCGGGCAATGGTCGTTGTACCGGAAAAGACCTCGTTCTGCAAGGATATCGCGTTCCCAAAGGAATTCTCGTAGGAATGGGCCAGCTGGTACTGCAGCGAGAGGAAGGCTACTTTACCCGCCCGTCGGAGTTCATGCCGGAACGATGGCTTAGCGGGGAGGCCGCGGCCGGTTGTCCCAGTGCCAAGGAGGTTCATCCGTTCGTCTACCTGCCGTTCGGGTTCGGGGCCCGTTCCTGCATCGGTAAGCGGTTGGCAATGATGGAGATGGAGATACTGGTGTGTCGCATGGTGCGCAAGTATGATGTTGGTTGGAATTACGGCGAGCTGAAGTACAGAGCGACACTTGTCAACATACCTGCGAACGATCTAAAGTTCCAGCTGAAGGAAGT ]
[+] EMBL AGA280220 [ tttttTTTAATTGCTACCCGTATCGATGAAGCTGTAATAAGGATGGAAAAGAATCCAAGCGCTGATCAAGACACGTTGAGCATTCTGGAGAAACTGTTGAAGGTGGATCGTAATGCGGCCTTCACGATGTCGATGGACAGTTTGTTCGCTGGTGTTGATACGACCTCCTCAGGATCGACGGGAATTCTGTACTGTCTAGCCAAGAACCCTGAGAAGCAGGAGAAACTTCGTGCCGAGTTGCGGAAGATTATGCCCAACAAGGACAGTCCACTCACGCCGGATAGTATGAAGAATATGCCGTACCTTAGGGCTTGTATCAAGGAGAGtccg ]
[+] EMBL BM645597 [ ccgGGACAGTCCACTCACGCCGGATAGTATGAAGAATATGCCGTACCTTAGGGCTTGTATCAAGGAGAGCCTGCGCATGTATCCACCGACCTCGGGCAATGGTCGTTGTACCGGAAAAGACCTCGTTCTGCAAGGATATCGCGTTCCCAAAGGAATTCTCGTAGGAATGGGCCAGCTGGTACTGCAGCGAGAGGAAGGCTACTTTACCCGCCCGTCGGAGTTCATGCCGGAACGATGGCTTAGCGGGGAGGCCGCGGCCGGTTGTCCCAGTGCCAAGGAGGTTCATCCGTTCGTCTACCTGCCGTTCGGGTTCGGGGCCCGTTCCTGCATCGGTAAGCGGTTGGCAATGATGGAGATGGAGATACTGGTGTGTCGCATGGTGCGCAAGTATGATGTTGGTTGGAATTACGGCGAGCTGAAGTACAGAGCGACACTTGTCAACATACCTGCGAACGATCTAAAGTTCCAGCTGAAGGAAGTGAGCGATTGAGCAACTGCTTAGGTAAGGTACTAGTTGGTAAGGGATTACTGTTTT]
[-] EMBL AGA281916 [ cTGTACCGGAAAAGACCTCGTTCTGCAAGGATATCGCGTTCCCAAAGGAATTCTCGTAGGAATGGGCCAGCTGGTACTGCAGCGAGAGGAAGGCTACTTTACCCGTCCGTCGGAGTTCATGCCGGAACGTTGGCTTAGCGGGGAGGCTGCGGCCGGTTGTCCCAGTGCCAAGGAGGTTCATCCGTTCGTCTACCTGCCGTTCGGGTTCGGGGCCCGTTCCTGCATCGGCAAGCGGTTGGCAATGATGGAGATGGAGATACTGGTGTGTCGCATGGTGCGCAAGTATGATGTTGGTTGGAATTACGGCGAGCTGAAGTACAGAGCGACACTTGT ]
consensusID : consensus_7126#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 872 fasta sequence
[GCAGAATCCGCACGAGGGTGGACAAGGTCGATACAGTGGCCCGGGAGTTTATGGCAATTGTCCATGGTCTGCGCGATGAGAAGCAGGAGTTGCCGGCTGACTTTAACGAATGGTTGAACCGTTGGGCATTCGAAACCATGGGTGTGCTGGTGCTGGACTCACGGCTTGGTGTTCTGGACAAGGACCAAACGCCCGAAGTTACCCATTTCATCGATCTAACGAAAGAGGCAGTCACCTTGTTCTATCAGCTTGATATACTGCCATCGATATGGCGGAAGCTGAAAACACCCGCCTTTTACAGACTGATGCGTGCATTGGACGAGCTTTATCATTTAATTGCTACCCGTATCGATGAAGCTGTAATAAGGATGGAAAAGAATCCAAGCGCTGATCAGGACACGTTGAGCATTCTGGAGAAACTGTTGAAGGTGGATCGTAATGCGGCCTTCACCATGTCGATGGATAGTTTGTTCGCTGGTGTTGATACGACCTCCTCAGGATCGACGGGAATCTGTACTGTCTGGGCAAGAACCCCGACAAAGCAGGGAGAAACTTTCGTGCCGAGCTGCGGAAAGATTATTGCCCAAACAAGGACAGGTCCANCTTCANCGGCCGGGAATACAGGTCATGAAGGGAAATTCATTGGCCCGTTAGCCTTAAGGGGGCTTGGGTNCTCCAAGGGGAAAAGGCCTTGGAGGGCCANATTGTATTTCCAACNGGAACCTTTCGGGGGGCCACAAAGGGGGATCACCGGTATGGTAACCCCGGGGGAAACAAGGNAACCTTNCGGTATTCTCTGGCACAGGGGCATNATTCGCGGCGGTTTCCCCGCAAAGGGGGCAAATTATCCTTCGGGTAGACGGNGAACTTGG]
[+] EMBL BX467836 [GCAGAATCCGCACGAGGGTGGACAAGGTCGATACAGTGGCCCGGGAGTTTATGGCAATTGTCCATGGTCTGCGCGATGAGAAGCAGGAGTTGCCGGCTGACTTTAACGAATGGTTGAACCGTTGGGCATTCGAAACCATGGGTGTGCTGGTGCTGGACTCACGGCTTGGTGTTCTGGACAAGGACCAAACGCCCGAAGTTACCCATTTCATCGATCTAACGAAAGAGGCAGTCACCTTGTTCTATCAGCTTGATATACTGCCATCGATATGGCGGAAGCTGAAAACACCCGCCTTTTACAGACTGATGCGTGCATTGGACGAGCTTTATCATTTAATTGCTACCCGTATCGATGAAGCTGTAATAAGGATGGAAAAGAATCCAAGCGCTGATCAGGACACGTTGAGCATTCTGGAGAAACTGTTGAAGGTGGATCGTAATGCGGCCTTCACCATGTCGATGGATAGTTTGTTCGCTGGTGTTGATACGACCTCCTCAGGATCGACGGGAATCTGTACTGTCTGGGCAAGAACCCCGACAAAGCAGGGAGAAACTTTCGTGCCGAGCTGCGGAAAGATTATTGCCCAAACAAGGACAGGTCCANCTTCANCGGCCGGGAATACAGGTCATGAAGGGAAATTCATTGGCCCGTTAGCCTTAAGGGGGCTTGGGTNCTCCAAGGGGAAAAGGCCTTGGAGGGCCANATTGTATTTCCAACNGGAACCTTTCGGGGGGCCACAAAGGGGGATCACCGGTATGGTAACCCCGGGGGAAACAAGGNAACCTTNCGGTATTCTCTGGCACAGGGGCATNATTCGCGGCGGTTTCCCCGCAAAGGGGGCAAATTATCCTTCGGGTAGACGGNGAACTTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7126#0 CCGGTTCGCGATGCTAAAATTAACAACCGTCAATTCGCTGCGCTTCCGGCCTTTCGGTGG 60
consensus_7126#1 ------------------------------------------------------------
consensus_7126#0 TGCGGTTCGGTGGCGTAGCGCTACCGCGCAACCAGCTGCTGACACGTCCGTCGATCCGGA 120
consensus_7126#1 ------------------------------------------------------------
consensus_7126#0 GTGGGAGAACGCGCTGCCGTTTGAAAAGATTCCCGCACCGTCTTTACTCGGATTTCTGAA 180
consensus_7126#1 ------------------------------------------------------------
consensus_7126#0 GGAATTTGGACCTTTTGGTAAATACAAGGATGGTAATCTGTACGATATCAACAAACGATT 240
consensus_7126#1 ------------------------------------------------------------
consensus_7126#0 ACGCGAGCTGTACGGTCCAATCTTGCGGATGAACGGTTCGTTTGGGAGGGAAGATTTGGT 300
consensus_7126#1 ------------------------------------------------------------
consensus_7126#0 GATGACGTTCGTACCGGAAGACTTTGAGAAGGTACTGCGCTCGGAGGGTCCCTGGCCAAG 360
consensus_7126#1 ------------------------------------------------------------
consensus_7126#0 GCGTACGGGGATGGATTCGTTCGTGTACTATCGCAAACAGCATCGTCCGGAGTACTTTAA 420
consensus_7126#1 ------------------------------------------------------------
consensus_7126#0 GGGCTATGGCGGATTGCTGGCCGAACAAGGCGAAGACTGGCACAAGATGCGGACGATCGT 480
consensus_7126#1 ------------------------------------------------------------
consensus_7126#0 CAATCCGATCATGATGCAGCCGAAGGTCATCAGGCAGTACGTGGACAAGGTCGATACAGT 540
consensus_7126#1 ---------------------GCAGA--ATCCGCACGAGGGTGGACAAGGTCGATACAGT 37
* ** *** * * ********************
consensus_7126#0 GGCCCGGGAGTTTATGGCAATTGTCCATGGTCTGTGCGATGAGAATCACGAGTTGCCGGC 600
consensus_7126#1 GGCCCGGGAGTTTATGGCAATTGTCCATGGTCTGCGCGATGAGAAGCAGGAGTTGCCGGC 97
********************************** ********** ** ***********
consensus_7126#0 TGACTTTAACGAATGGTTGAACCGTTGGGCGTTCGAAACCATGGGTGTGCTGGTGCTGGA 660
consensus_7126#1 TGACTTTAACGAATGGTTGAACCGTTGGGCATTCGAAACCATGGGTGTGCTGGTGCTGGA 157
****************************** *****************************
consensus_7126#0 CTCGCGGCTTGGTGTGCTGGACAAGGACCAAACACCCGAAGTTACCCATTTCATCGATCT 720
consensus_7126#1 CTCACGGCTTGGTGTTCTGGACAAGGACCAAACGCCCGAAGTTACCCATTTCATCGATCT 217
*** *********** ***************** **************************
consensus_7126#0 AACGAAAGGGGCAGTCACCTTGTTCTATCAGCTTGATATACTACCATCGATATGGCGGAA 780
consensus_7126#1 AACGAAAGAGGCAGTCACCTTGTTCTATCAGCTTGATATACTGCCATCGATATGGCGGAA 277
******** ********************************* *****************
consensus_7126#0 GCTGAAAACACCTGCCTTTTACAGACTGATGCGTGCATTGGACGAGCTTTATCATTTAAT 840
consensus_7126#1 GCTGAAAACACCCGCCTTTTACAGACTGATGCGTGCATTGGACGAGCTTTATCATTTAAT 337
************ ***********************************************
consensus_7126#0 TGCTGCCCGAATCGATGAAGCTGTAATAAGGATGGAAAAGAATCCAAGCGCTGATCAGGA 900
consensus_7126#1 TGCTACCCGTATCGATGAAGCTGTAATAAGGATGGAAAAGAATCCAAGCGCTGATCAGGA 397
**** **** **************************************************
consensus_7126#0 CACGTTGAGCATTCTGGAGAAACTGTTGAAGGTGGATCGTAATGCGGCCTTCACGATGTC 960
consensus_7126#1 CACGTTGAGCATTCTGGAGAAACTGTTGAAGGTGGATCGTAATGCGGCCTTCACCATGTC 457
****************************************************** *****
consensus_7126#0 GATGGACAGTTTGTTCGCTGGTGTTGATACGACCTCCTCAGGATCGACGGGAATTCTGTA 1020
consensus_7126#1 GATGGATAGTTTGTTCGCTGGTGTTGATACGACCTCCTCAGGATCGACGGGAAT-CTGTA 516
****** *********************************************** *****
consensus_7126#0 CTGTCTAGCCAAGAACCCTGA-GAAGCAGG-AGAAACTT-CGTGCCGAGTTGCGGAA-GA 1076
consensus_7126#1 CTGTCTGGGCAAGAACCCCGACAAAGCAGGGAGAAACTTTCGTGCCGAGCTGCGGAAAGA 576
****** * ********* ** ******* ******** ********* ******* **
consensus_7126#0 TTAT-GCCCAA-CAAGGACAG-TCCACTCACGCCGGATAGTATGAAGAATATGCCGTACC 1133
consensus_7126#1 TTATTGCCCAAACAAGGACAGGTCCANCTTCANCGGCCGG------GAATAC-------- 622
**** ****** ********* **** * *** * *****
consensus_7126#0 TTAGGGCTTGTATCAAGGAGAGCCTGCGCATGTATCCACCGACCTCGGGCAATGGTCGTT 1193
consensus_7126#1 --AGGTC----ATGAAGGGAAATTCATTGGCCCGTTAGCCTTAAGGGGGCTTGGGTNCTC 676
*** * ** **** * * ** **** *** *
consensus_7126#0 GTACCGGAAAAGACCTCGTTCTGCAAGGATATCGCGTTCCCAAAGGAATTCTCGTAGGAA 1253
consensus_7126#1 CAAGGGGAAAAGGCCTTGGAGGGCC---ANATTGTATTTCCAACNGGAACCTTTCGGGGG 733
* ******* *** * ** * ** * ** **** * * ** **
consensus_7126#0 TGGGCCAGCTGGTACTGCAGCGAGAGGAAGGCTACTTTACCCGCCCGTCGGAGTTCATGC 1313
consensus_7126#1 GCCACAAAGGGGGATCACCG-----GTATGGTAACCCCGGGGGAAACAAGGNAACCTTNC 788
* * ** * * * * * ** ** * ** * * *
consensus_7126#0 CGGAA-CGATGGCTTAGCGGGGAGGCCGCGGCCGGTTGTCCCAGTGCCAAGGAGGTTCAT 1372
consensus_7126#1 GGTATTCTCTGGCACAGGGGCATNATTCGCGGCGGTTTCCCCG----CAAAGGGGGCAAA 844
* * * **** ** ** * ***** *** *** * ** *
consensus_7126#0 CCGTTCGTCTACCTGCCGTTCGGGTTCGGGGCCCGTTCCTGCATCGGTAAGCGGTTGGCA 1432
consensus_7126#1 TTATCCTTCGGGTAGACGGN-GAACTTGG------------------------------- 872
* * ** * ** * * **
consensus_7126#0 ATGATGGAGATGGAGATACTGGTGTGTCGCATGGTGCGCAAGTATGATGTTGGTTGGAAT 1492
consensus_7126#1 ------------------------------------------------------------
consensus_7126#0 TACGGCGAGCTGAAGTACAGAGCGACACTTGTCAACATACCTGCGAACGATCTAAAGTTC 1552
consensus_7126#1 ------------------------------------------------------------
consensus_7126#0 CAGCTGAAGGAAGTGAGCGATTGAGCAACTGCTTAGGTAAGGTACTAGTTGGTAAGGGAT 1612
consensus_7126#1 ------------------------------------------------------------
consensus_7126#0 TACTGTTTT 1621
consensus_7126#1 ---------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||