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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7131#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1039 fasta sequence
[CCGGGCGAAAGACAAGGCCGCAATCACTCCCGGCACTGACATCGACAAGTCTGTTAGAAAGGATGCTTCCGAGGAGCACCCCAAATCCGCCGTCATACAAAACCAGCCACCCGCTGACATTACCAAGCCAAACAAGGAGGCAGAACAAGGAAAAGACAGCGATCTGGCCGATGCTGGTGCTGCATTAAATACGGCAGAAAAAGCACATAAAGAATCAGTGCCGAGCCCAGTGCAGTTGCCCCACCAGAAACCAGTTCTACCGGAGAAGAGCGACGGCGATCTAGAACAACAGCAAGGTGGATTGGACGGTGCTGTCGCAGGTGATGTGGCTCCATTCGATGACGAACCCAAGCAGGCGGCCGAACAGGATGCCAAAGGTGGCACTCCGCCGGTGTATGAAACTTCGGACGAATCTGAGGGCATCGCTTCCGCTGAAGACGTCAACGAAAACGGAGACGACTTGGAGCTTAACGGGTTTCAACCCGTAGGTAAGCCGGATTTGCAAGAGAAAGTAAAACCAGACGAACTGACGGACAGTTCAAAGGCGAGTGACATCGTGCCGGGTGCGGATCCATTTTACGAGCAGAAGGATTCGAACTTTTTCTCCTACTTCCTGTTTGCCATGTTCAGCTGCGCCATGCTCTACGTCGCATATCACAACAAATCGAAGCTGCT-GGCCCT-GGTCGTCGAAGGACGACGGACGAGTAGC-GGGC-GGGGTGGGTTCAGCAAGGGGCGCAAACATACGGCCGCCTATCGCAAACTGGACTCCAACCTGGAGGAAGCAATTACATCGGGCAACGGTTCTGGTGCACATTCGTCTTCACAGATCATCTACTAAAAGACACTATAGAGCCTTGCCTGCGTGTGTATCTAAAGCGCTCATTCGTTCCCTTCGTCCCCCTTCCCAGGTTGTGTGGGANGGGTTCTGTGTAAATATCTTCCATTCATCGTTCCTTACGTTTCATTCAGTAGGCGCCTTACTGAAGCGATCCCCCGAAGCCTTACTAGCCCGCCTACTCTGTCTGCACGCGGTAGCAAC]
[+] EMBL BM578254 [CCGGGCGAAAGACAAGGCCGCAATCACTCCCGGCACTGACATCGACAAGTCTGTTAGAAAGGATGCTTCCGAGGAGCACCCCAAATCCGCCGTCATACAAAACCAGCCACCCGCTGACATTACCAAGCCAAACAAGGAGGCAGAACAAGGAAAAGACAGCGATCTGGCCGATGCTGGTGCTGCATTAAATACGGCAGAAAAAGCACATAAAGAATCAGTGCCGAGCCCAGTGCAGTTGCCCCACCAGAAACCAGTTCTACCGGAGAAGAGCGACGGCGATCTAGAACAACAGCAAGGTGGATTGGACGGTGCTGTCGCAGGTGATGTGGCTCCATTCGATGACGAACCCAAGCAGGCGGCCGAACAGGATGCCAAAGGTGGCACTCCGCCGGTGTATGAAACTTCGGACGAATCTGAGGGCATCGCTTCCGCTGAAGACGTCAACGAAAACGGAGACGACTTGGAGCTTAACGGGTTTCAACCCGTAGGTAAGCCGGATTTGCAAGAGAAAGTAAAACCAGACGAACTGACGGACAGTTCAAAGGCGAGTGACATCGTGCCGGGTGCGGATCCATTTTACGAGCAGAAGGATTCGAACTTTTTCTCCTACTTCCTGTTTGCCATGTTCAGCTGC ]
[+] EMBL BM578213 [ ccGAGAAGAGCGACGGCGATCTAGAACAACAGCAAGGTGGATTGGACGGTGCTGTCGCAGGTGATGTGGCTCCATTCGATGACGAACCCAAGCAGGCGGCCGAACAGGATGCCAAAGGTGGCACTCCGCCGGTGTATGAAACTTCGGACGAATCTGAGGGCATCGCTTCCGCTGAAGACGTCAACGAAAACGGAGACGACTTGGAGCTTAACGGGTTTCAACCCGTAGGTAAGCCGGATTTGCAAGAGAAAGTAAAACCAGACGAACTGACGGACAGTTCAAAGGCGAGTGACATCGTGCCGGGTGCGGATCCATTTTACGAGCAGAAGGATTCGAACTTTTTCTCCTACTTCCTGTTTGCCATGTTCAGCTGCGCCATGCTCTACGTCGCATATCACAACAAATCGAAGCTGCTGGGCCCTGGGTCGTCGAAGGACGACGGACGAGTAGCGGGGCGGGGGTGGGTTCAGCAAGGGACGCAAACATACGGCCGCCTATCGCAAACTGGACTCCAACCTGGAGGAAGCAATTACATCGGGCAAGGGTTCTGGTGCACATTCGTCTTCACAGATCATCTACTAAAAGACACTATAGAGCATTGCCTGCGTGT ]
[+] EMBL BX625382 [ TTGGACGGTGCTGTCGCAGGTGATGTGGCTCCATTCGATGACGAACCCAAACAGGCGGCCGAACAGGATGCCAAAGGTGGCACTCCGCCGGTGTATGAAACTTCGGACGAATCTGAGGGCATCGCTTCTGCTGAAGACGTCAACGAAAACGGAGACGACTTGGAGCTTAACGGGTTTCAACCCGTGGGTAAGCCGGATTTGCAAGAGAAAGCAAAACCAGACGAACTGACGGACAGTTCAAAGGCGAGTGACATCGTGCCGGGTGCGGATCCATTTTACGAGCAGAAGGATTCGAACTTTTTCTCCTACTTCCTGTTTGCCATGTTCAGCTGCGCCATGCTCTACGTCGCATATCACAACAAATCGAAGCTGCT GGCCCT GGTCGTCGAAGGTCGACGGACGAGTAGC GGGC GGGGTGGATTCAGCAAGGGGCGCAAACATACGGCCGCCTATCGCAAACTGGACTCCAACCTGGAGGAAGCAATTACATCGGGCAACGGTTCTGGTGCACATTCGTCTTCACAGATCATCTACTAAAAGACACTATAGAGCCTTGCCTGCGTGTGTATCTAAAGCGCTCATTCGTTCCCTTCGTCCCCCTTCCCAGGTTGTGTGGGANGGGTTCTGTGTAAATATCTTCCATTCATCGTTCCTTACGTTTCATTCAGTAGGCGCCTTACTGAAGCG ]
[+] EMBL BX625362 [ AGGTGATGTGGCTCCATTCGATGACGAACCCAAACAGGCGGCCGAACAGGATGCCAAAGGTGGCACTCCGCCGGTGTATGAAACTTCGGACGAATCTGAGGGCATCGCTTCTGCTGAAGACGTCAACGAAAACGGAGACGACTTGGAGCTTAACGGGTTTCAACCCGTGGGTAAGCCGGATTTGCAAGAGAAAGCAAAACCAGACGAACTGACGGACAGTTCAAAGGCGAGTGACATCGTGCCGGGTGCGGATCCATTTTACGAGCAGAAGGATTCGAACTTTTTCTCCTACTTCCTGTTTGCCATGTTCAGCTGCGCCATGCTCTACGTCGCATATCACAACAAATCGAAGCTGCT GGCCCT GGTCGTCGAAGGTCGACGGACGAGTAGC GGGC GGGGTGGATTCAGCAAGGGGCGCAAACATACGGCCGCCTATCGCAAACTGGACTCCAACCTGGAGGAAGCAATTACATCGGGCAACGGTTCTGGTGCACATTCGTCTTCACAGATCATCTACTAAAAGACACTATAGAGCCTTGCCTGCGTGTGTATCTAAAGCGCTCATTCGTTCCCTTCGTCCCCCTTCCCAGGTTGTGTGGGAGGGGTTCTGTGTAAATATCTTCCATTCATCGTTCCTTACGTTTCATTCAGTAGGCGCCTTACTGAAGCGATCCCCCGAAGCCTTACTAGCCCGCCTACTCTGTCTGCACGCGGTAGCAAC]
[+] EMBL BX613746 [ gGCGCGACGTCGCATATCACAACAAATCGAAGCGGCT GGCCCT GGTCGTCGAAGGACGACGGACGAGTAGC GGGC GGGGGGGGTCCAGCAAGGGGCGCAAACATACGGCCGCCTATCGCAAACGGGACTCCAACCTGGAAGAAGCAATAACATCGG ]
consensusID : consensus_7131#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 485 fasta sequence
[ATCCCCGAGGNCAAAACGGAGACGACTTGGAGCTTACGGGTTTCAACCCGTGGGTAAGCCGGATTTGCAAGAGAAAGCAAAACCAGACGAACTGACGGACAGTTCAAAGGCGAGTGACATCGTGCCGGGTGCGGATCCATTTTACGAGCAGAAGGATTCGAACTTTTTCTCCTACTTCCTGTTTGCCATGTTCAGCTGCGCCATGCTCTACGTCGCATATCACAACAAATCGAAGCTGCTGGCCCTGGTCGTCGAAGGACGACGGACGAGTAGCGGGCGGGGTGGGTTCAGCAAGGGGCGCAAACATACGGCCGCCTATCGCAAACTGGACTCCAACCTGGGAGGAAGCAATTACATCGGGCAACGGTTCTGGTGCACATTCGTCTTCACAGATCATCTACTAAAAGACACTATAGAGCATTGCCTGCGTGTGTATCTAAAGCGCTCATTCGTTCCCTTCGTCCCCCTTCCCAGGTTGAGTGGGA]
[+] EMBL AL932925 [ATCCCCGAGGNCAAAACGGAGACGACTTGGAGCTTACGGGTTTCAACCCGTGGGTAAGCCGGATTTGCAAGAGAAAGCAAAACCAGACGAACTGACGGACAGTTCAAAGGCGAGTGACATCGTGCCGGGTGCGGATCCATTTTACGAGCAGAAGGATTCGAACTTTTTCTCCTACTTCCTGTTTGCCATGTTCAGCTGCGCCATGCTCTACGTCGCATATCACAACAAATCGAAGCTGCTGGCCCTGGTCGTCGAAGGACGACGGACGAGTAGCGGGCGGGGTGGGTTCAGCAAGGGGCGCAAACATACGGCCGCCTATCGCAAACTGGACTCCAACCTGGGAGGAAGCAATTACATCGGGCAACGGTTCTGGTGCACATTCGTCTTCACAGATCATCTACTAAAAGACACTATAGAGCATTGCCTGCGTGTGTATCTAAAGCGCTCATTCGTTCCCTTCGTCCCCCTTCCCAGGTTGAGTGGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7131#0 CCGGGCGAAAGACAAGGCCGCAATCACTCCCGGCACTGACATCGACAAGTCTGTTAGAAA 60
consensus_7131#1 ------------------------------------------------------------
consensus_7131#0 GGATGCTTCCGAGGAGCACCCCAAATCCGCCGTCATACAAAACCAGCCACCCGCTGACAT 120
consensus_7131#1 ------------------------------------------------------------
consensus_7131#0 TACCAAGCCAAACAAGGAGGCAGAACAAGGAAAAGACAGCGATCTGGCCGATGCTGGTGC 180
consensus_7131#1 ------------------------------------------------------------
consensus_7131#0 TGCATTAAATACGGCAGAAAAAGCACATAAAGAATCAGTGCCGAGCCCAGTGCAGTTGCC 240
consensus_7131#1 ------------------------------------------------------------
consensus_7131#0 CCACCAGAAACCAGTTCTACCGGAGAAGAGCGACGGCGATCTAGAACAACAGCAAGGTGG 300
consensus_7131#1 ------------------------------------------------------------
consensus_7131#0 ATTGGACGGTGCTGTCGCAGGTGATGTGGCTCCATTCGATGACGAACCCAAGCAGGCGGC 360
consensus_7131#1 ------------------------------------------------------------
consensus_7131#0 CGAACAGGATGCCAAAGGTGGCACTCCGCCGGTGTATGAAACTTCGGACGAATCTGAGGG 420
consensus_7131#1 ------------------------------------------------------------
consensus_7131#0 CATCGCTTCCGCTGAAGACGTCAACGAAAACGGAGACGACTTGGAGCTTAACGGGTTTCA 480
consensus_7131#1 -------ATCCCCGAGGNC-------AAAACGGAGACGACTTGGAGCTTA-CGGGTTTCA 45
* * ** * * ************************ *********
consensus_7131#0 ACCCGTAGGTAAGCCGGATTTGCAAGAGAAAGTAAAACCAGACGAACTGACGGACAGTTC 540
consensus_7131#1 ACCCGTGGGTAAGCCGGATTTGCAAGAGAAAGCAAAACCAGACGAACTGACGGACAGTTC 105
****** ************************* ***************************
consensus_7131#0 AAAGGCGAGTGACATCGTGCCGGGTGCGGATCCATTTTACGAGCAGAAGGATTCGAACTT 600
consensus_7131#1 AAAGGCGAGTGACATCGTGCCGGGTGCGGATCCATTTTACGAGCAGAAGGATTCGAACTT 165
************************************************************
consensus_7131#0 TTTCTCCTACTTCCTGTTTGCCATGTTCAGCTGCGCCATGCTCTACGTCGCATATCACAA 660
consensus_7131#1 TTTCTCCTACTTCCTGTTTGCCATGTTCAGCTGCGCCATGCTCTACGTCGCATATCACAA 225
************************************************************
consensus_7131#0 CAAATCGAAGCTGCTGGCCCTGGTCGTCGAAGGACGACGGACGAGTAGCGGGCGGGGTGG 720
consensus_7131#1 CAAATCGAAGCTGCTGGCCCTGGTCGTCGAAGGACGACGGACGAGTAGCGGGCGGGGTGG 285
************************************************************
consensus_7131#0 GTTCAGCAAGGGGCGCAAACATACGGCCGCCTATCGCAAACTGGACTCCAACCTGG-AGG 779
consensus_7131#1 GTTCAGCAAGGGGCGCAAACATACGGCCGCCTATCGCAAACTGGACTCCAACCTGGGAGG 345
******************************************************** ***
consensus_7131#0 AAGCAATTACATCGGGCAACGGTTCTGGTGCACATTCGTCTTCACAGATCATCTACTAAA 839
consensus_7131#1 AAGCAATTACATCGGGCAACGGTTCTGGTGCACATTCGTCTTCACAGATCATCTACTAAA 405
************************************************************
consensus_7131#0 AGACACTATAGAGCCTTGCCTGCGTGTGTATCTAAAGCGCTCATTCGTTCCCTTCGTCCC 899
consensus_7131#1 AGACACTATAGAGCATTGCCTGCGTGTGTATCTAAAGCGCTCATTCGTTCCCTTCGTCCC 465
************** *********************************************
consensus_7131#0 CCTTCCCAGGTTGTGTGGGANGGGTTCTGTGTAAATATCTTCCATTCATCGTTCCTTACG 959
consensus_7131#1 CCTTCCCAGGTTGAGTGGGA---------------------------------------- 485
************* ******
consensus_7131#0 TTTCATTCAGTAGGCGCCTTACTGAAGCGATCCCCCGAAGCCTTACTAGCCCGCCTACTC 1019
consensus_7131#1 ------------------------------------------------------------
consensus_7131#0 TGTCTGCACGCGGTAGCAAC 1039
consensus_7131#1 --------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||