|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7154#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 827 fasta sequence
[TTGAATAAAGCCACCAATTTCGTTTTATTAAATGTCTATAGTAGGGGATACTAGTGCGAGTAACGATGCAATCTTACACATTCGAAAATCCTGTCTTCGTTTTCCGGTTCAGGAAGCGGTACAGATATGAAATGCGCTTCTCCATATCGCGCCATTTCGTTGGCCTGGCGACCGGGTAAATCGTCCGGCTAAGCATTTTTCGCTTTCGCAGCAGCACCTGATACTCGTTGCCGGACACACCGCGGA-CCAAGCTGGCACAGAGTACAGCACACGGGTAGGATGGAGCCGATCGTCGCCAAGAATATCGATATAATCGTTCTGGCCGAACAGTGCACGTTTCTCGCACCAAGCGTTCTTGGGTTTGTAATCGGGCATTGGCAGCTTCTGTCCGTTATCTAGATGGGGTAGAAGACCCCGTTGCAGTATTTTGTCCTCATAACCGTACCGCCGAATGAGCGGTCCGCGAGCCACTTTGTCGGCATGATAGCGATACCGGACAGCGGTAACTTGCGGTTTCCAGAAGCATTTTGCCAGCGATGTGAGTATGCTACCAGCAAAGGCCATTTTGTTGCAATTCACGTTGTTTTGGCCTGGGAAAAAGAACAACAAAGTGCCTGTAAACGATTTTCAGCGAAATTCCACACATCAAACAAGGTAGATACACTCAAGGTAGGTCTTTTTAATTGCTTACTAGAAAATGTATTGTTTGCAGCATTTTATAAACAGATTTTAACATTTATTTGTCTATGTTTTCACCAGAAGATTATTTCTATACATTCACGTGCTGATATTAATCGTTCAATCAAAATTATCCAATAGGCCAACAG]
[+] EMBL CNS09OPY [TTGAATAAAGCCACCAATTTCGTTTTATTAAATGTCTATAGTAGGGGATACTAGTGCGAGTAACGATGCAATCTTACACATTCGAAAATCCTGTCTTCGTTTTCCGGTTCAGGAAGCGGTACAGATATGAAATGCGCTTCTCCATATCGCGCCATTTCGTTGGCCTGGCGACCGGGTAAATCGTCCGGCTAAGCATTTTTCGCTTTCGCAGCAGCACCTGATACTCGTTGCCGGACACACCGCGGA CCAAGCTGGCACAGAGTACAGCACACGGGTAGGATGGAGCCGATCGTCGCCAAGAATATCGATATAATCGTTCTGGCCGAACAGTGCACGTTTCTCGCACCAAGCGTTCTTGGGTTTGTAATCGGGCATTGGCAGCTTCTGTCCGTTATCTAGATGGGGTAGAAGACCCCGTTGCAGTATTTTGTCCTCATAACCGTACCGCCGAATGAGCGGTCCGCGAGCCACTTTGTCGGCATGATAGCGATACCGGACAGCGGTAACTTGCGGTTTCCAGAAGCATTTTGCCAGCGATGTGAGTATGCTACCAGCAAAGGCCATTTTGTTGCAATTCACGTTGTTTTGGCCTGGGAAAAAGAACAACAAAGTGCCTGTAAACGATTTTCAGCGAAATTCCACACATCAAACAAGGTAGATACACTCAAGGTAGGTCTTTTTAATTGCTTACTAGAAAATGTATTGTTTGCAGCATTTTATAAACAGATTTTAACATTTATTTGTCTATGTTTTCACCAGAAGATTATTTCTATACATTCACGTGCTGATATTAATCGTTCAATCAAAATTATCCAATAGGCCAACAG]
[-] EMBL BM593721 [ TTATTAAATGTCTATAGTAGGGGATACTAGTGCGAGTAACGATGCAATCTTACACATTCGAAAATCCTGTCTTCGTTTTTCGGTTCAGGAAGCGGTACAGATATGAAATGCGCTTCTCCATATCACGCCATTTCGTTGGCCTGGCGACCGGGTAAATCGTCCGGCTAAGCATTTTTCGCTTTCGCAGCAGCACCTGATACTCGTTGCCGGACACACCGCGGAGCCAAGCTGGCACAGAGTACAGCACACGGGTAGGATGGAGCCGATCGTCGCCAAGAATATCGATATAATCGTTCTGGCCGAACAGTGCACGTTTCTCGCACCAAGCGTTCTTCGGTTTGTAATCAGGCATTGGCAGCTTCTGTCCGTTGTCTAGATGAGGTAGAAGACCCCGTTGCAGTATTTTGTCCTCATAACCGTACCGCCGAATGAGCGGTCCGCGAGCCACTTTGTCGGCATGATAGCGATACCGGACAGCGGTAACTTGCGGTTTCCAGAAGCATTTTGCCAGCGATGTGAGTATGCTACCAGCAAAGGCCATTTTGTTGCAATTCACcgg ]
consensusID : consensus_7154#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 723 fasta sequence
[GNCCTGCNANCANCGCTCTGTTTGNGTNTGTTGTTCGTNTCGGNTNCTNGTCGTNGTTGCTATNTGNGTCTGGTGNNGCTGNTGTTGTGTGTGATTGTTGTTTTNGTGGTGTTGGGGAAGTAAANGCCCACCAATGTGTCCGTGNTGTTATTTGAAATGGTTCTAATACGTANGGGGGATACTAGTGCGAGTAACGAGTGCAATCTTAACACATTCGANAAAATCCTGTCTGTCGTTCTTCCGGTTCAGGAAGCGGTACAGATATGAAATGCGCTTCTCCATAGTCGCGCCATGTTCGTTGGCCTGGCGACCGGGTAAATCGTCCGGCTAAGCATTTTTCGCTTTCGCAGCAGCACCTGATACTCGGTTGCCGGACACACCGCGGAGCCAAGCCGGCACAGAGTACAGCACACGGGTAGGATGGACCGATCGTCGCCAAGAATATCGATATAATCGTTCTGCCGAACAGTGCACGTTTCTCGCACCAAGCGTTCTTGGGTTTGTAATCGGGCATTGGCAGCTTCTGTCCGTTATCTAGATGGGGTAGAAGACCCCGTTGCAGTATTTTGTCCTCATAACCGTACCGCCGAATGAGCGGTCCGCGAGCCACTTTGTCGGCATGATAGCGATACCGGACAGCGGTAACTTGCGGTTTCCAGAAGCATTTGCCAGCGATGTGAGTATGCTACCAGCAAAGGCCATTTTGTGCAATTTAAACCTGCG]
[-] EMBL AL933659 [GNCCTGCNANCANCGCTCTGTTTGNGTNTGTTGTTCGTNTCGGNTNCTNGTCGTNGTTGCTATNTGNGTCTGGTGNNGCTGNTGTTGTGTGTGATTGTTGTTTTNGTGGTGTTGGGGAAGTAAANGCCCACCAATGTGTCCGTGNTGTTATTTGAAATGGTTCTAATACGTANGGGGGATACTAGTGCGAGTAACGAGTGCAATCTTAACACATTCGANAAAATCCTGTCTGTCGTTCTTCCGGTTCAGGAAGCGGTACAGATATGAAATGCGCTTCTCCATAGTCGCGCCATGTTCGTTGGCCTGGCGACCGGGTAAATCGTCCGGCTAAGCATTTTTCGCTTTCGCAGCAGCACCTGATACTCGGTTGCCGGACACACCGCGGAGCCAAGCCGGCACAGAGTACAGCACACGGGTAGGATGGACCGATCGTCGCCAAGAATATCGATATAATCGTTCTGCCGAACAGTGCACGTTTCTCGCACCAAGCGTTCTTGGGTTTGTAATCGGGCATTGGCAGCTTCTGTCCGTTATCTAGATGGGGTAGAAGACCCCGTTGCAGTATTTTGTCCTCATAACCGTACCGCCGAATGAGCGGTCCGCGAGCCACTTTGTCGGCATGATAGCGATACCGGACAGCGGTAACTTGCGGTTTCCAGAAGCATTTGCCAGCGATGTGAGTATGCTACCAGCAAAGGCCATTTTGTGCAATTTAAACCTGCG]
consensusID : consensus_7154#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence
[GTAACGATGCAATCTTACACATTCGAAAATCCTGTCTTCGTTTTTCGGTTCAGGAAGCGGTACAGATATGAAATGCGCTTCTCCATATCGCGCCATTTCGTTGGCCTGGCGACCGGGTAAATCGTCCGGCTAAGCATTTTTCGCTTTCGCAGCAGCACCTGATACTCGTTGCCGGACACACCGCGGAGCCAAGCCGGCACAGAGTACAGCACACGGGTAGGATGGAGCCGATCGTCGCCAAGAATATCGATATAATCGTTCTGGCCGAACAGTGCACGTTTCTCGCACCAAGCGTTCTTGGGTTTGTAATCGGGCATTGGCAGCTTCTGTCCGTTATCTAGATGGGGTAGAAGACCCCTTTGCAGTATTTTGTCCTCATAACCGTACCGCCGAATGAGCGGTCCGCGAGCCACTTTGTCGGCATGATAGCGATACCGGACAGCGGTAACTTGCGGTTTCCAGAAGCATTTTGCCAGCGATGTGAGTATGCTACCAGCAAAGGCCATTTTGTTGCTGAAGGAAGGGAATGAAAACCTTTTTCCAATTAAACAAACATCTGTTTTTATCAAACTTTGTTACAAAACCACTAACCAATTCACGTTGTTTCGGACGCGTGGGCGG]
[-] EMBL BM626566 [GTAACGATGCAATCTTACACATTCGAAAATCCTGTCTTCGTTTTTCGGTTCAGGAAGCGGTACAGATATGAAATGCGCTTCTCCATATCGCGCCATTTCGTTGGCCTGGCGACCGGGTAAATCGTCCGGCTAAGCATTTTTCGCTTTCGCAGCAGCACCTGATACTCGTTGCCGGACACACCGCGGAGCCAAGCCGGCACAGAGTACAGCACACGGGTAGGATGGAGCCGATCGTCGCCAAGAATATCGATATAATCGTTCTGGCCGAACAGTGCACGTTTCTCGCACCAAGCGTTCTTGGGTTTGTAATCGGGCATTGGCAGCTTCTGTCCGTTATCTAGATGGGGTAGAAGACCCCTTTGCAGTATTTTGTCCTCATAACCGTACCGCCGAATGAGCGGTCCGCGAGCCACTTTGTCGGCATGATAGCGATACCGGACAGCGGTAACTTGCGGTTTCCAGAAGCATTTTGCCAGCGATGTGAGTATGCTACCAGCAAAGGCCATTTTGTTGCTGAAGGAAGGGAATGAAAACCTTTTTCCAATTAAACAAACATCTGTTTTTATCAAACTTTGTTACAAAACCACTAACCAATTCACGTTGTTTCGGACGCGTGGGCGG]
consensusID : consensus_7154#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 574 fasta sequence
[TGTCTATAGTAGGGGATACTAGTGCGAGTAACGATGCAATCTTACACATTCGAAAATCCTGTCTTCGTTTTCCGGTTCAGGAAGCGGTACAGATATGAAATGCGCTTCTCCATATCGCGCCATTTCGTTGGCCTGGCGACCGGGTAAATCGTCCGGCTAAGCATTTTTCGCTTTCGCAGCAGCACCTGATACTCGTTGCCGGACACACCGCGGAGCCAAGCCGGCACAGAGTACAGCACACGGGTAGGATGGAGCCGATCGTCGCCAAGAATATCGATATAATCGTTCTGGCCGAACAGTGCACGTTTCTCGCACCAAGCGTTCTTGGGTTTGTAATCGGGCATTGGCAGCTTCTGTCCGTTATCTAGATGGGGTAGAAGACCCCGTTGCAGTATTTTGTCCTCATAACCGTACCGCCGAATGAGCGGTCCGCGAGCCACTTTGTCGGCATGATAGCGATACCGGACAGCGGTAACTTGCGGTTTCCAGAAGCATTTTGCCAGCGATGTGAGTATGCTACCAGCAAAGGCCATTTTGTTGCAATTCACGTTGTTTTGGCCGGACGCGTGGGCGG]
[-] EMBL BM623491 [TGTCTATAGTAGGGGATACTAGTGCGAGTAACGATGCAATCTTACACATTCGAAAATCCTGTCTTCGTTTTCCGGTTCAGGAAGCGGTACAGATATGAAATGCGCTTCTCCATATCGCGCCATTTCGTTGGCCTGGCGACCGGGTAAATCGTCCGGCTAAGCATTTTTCGCTTTCGCAGCAGCACCTGATACTCGTTGCCGGACACACCGCGGAGCCAAGCCGGCACAGAGTACAGCACACGGGTAGGATGGAGCCGATCGTCGCCAAGAATATCGATATAATCGTTCTGGCCGAACAGTGCACGTTTCTCGCACCAAGCGTTCTTGGGTTTGTAATCGGGCATTGGCAGCTTCTGTCCGTTATCTAGATGGGGTAGAAGACCCCGTTGCAGTATTTTGTCCTCATAACCGTACCGCCGAATGAGCGGTCCGCGAGCCACTTTGTCGGCATGATAGCGATACCGGACAGCGGTAACTTGCGGTTTCCAGAAGCATTTTGCCAGCGATGTGAGTATGCTACCAGCAAAGGCCATTTTGTTGCAATTCACGTTGTTTTGGCCGGACGCGTGGGCGG]
[-] EMBL BM612417 [ GTAGGAGATACTAGTGCGAGTAACGATGCAATCTTACACATTCGAAAATCCTGTCTTCGTTTTTCGGTTCAGGAAGCGGTACAGATATGAAATGCGCTTCTCCATATCGCGCCATTTCGTTGGCCTGGCGACCGGGTAAATCGTCCGGCTAAGCATTTTTCGCTTTCGCAGCAGCACCTGATACTCGTTGCCGGACACACCGCGGAGCCAAGCCGGCACAGAGTACAGCACACGGGTAGGATGGAGCCGATCGTCGCCAAGAATATCGATATAATCGTTCTGGCCGAACAGTGCACGTTTCTCGCACCAAGCGTTCTTGGGTTTGTAATCGGGCATTGGCAGCTTCTGTCCGTTATCTAGATGGGGTAGAAGACCCCTTTGCAGTATTTTGTCCTCATAACCGTACCGCCGAATGAGCGGTCCGCGAGCCACTTTGTCGGCATGATAGCGATACCGGACAGCGGTAACTTGCGGTTTCCAGAAGCATTTTGCCAGCGATGTGAGTATGCTACCAGCAAAGGCCATTTTGTTGCAATTCACGTTGTTTTGcgg ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7154#0 ------------------------------------------------------------
consensus_7154#3 ------------------------------------------------------------
consensus_7154#2 ------------------------------------------------------------
consensus_7154#1 GNCCTGCNANCANCGCTCTGTTTGNGTNTGTTGTTCGTNTCGGNTNCTNGTCGTNGTTGC 60
consensus_7154#0 ------------------------------------------------------------
consensus_7154#3 ------------------------------------------------------------
consensus_7154#2 ------------------------------------------------------------
consensus_7154#1 TATNTGNGTCTGGTGNNGCTGNTGTTGTGTGTGATTGTTGTTTTNGTGGTGTTGGGGAAG 120
consensus_7154#0 -----TTGAATAAAGCCACCAATTTCGTTTTATTAAATGTCTATAGTA------GGGGAT 49
consensus_7154#3 -------------------------------------TGTCTATAGTA------GGGGAT 17
consensus_7154#2 ------------------------------------------------------------
consensus_7154#1 TAAANGCCCACCAATGTGTCCGTGNTGTTATTTGAAATGGTTCTAATACGTANGGGGGAT 180
consensus_7154#0 ACTAGTGCGAGTAACGA-TGCAATCTTA-CACATTCGAAAA--TCCTGTCT-TCGTT-TT 103
consensus_7154#3 ACTAGTGCGAGTAACGA-TGCAATCTTA-CACATTCGAAAA--TCCTGTCT-TCGTT-TT 71
consensus_7154#2 ----------GTAACGA-TGCAATCTTA-CACATTCGAAAA--TCCTGTCT-TCGTT-TT 44
consensus_7154#1 ACTAGTGCGAGTAACGAGTGCAATCTTAACACATTCGANAAAATCCTGTCTGTCGTTCTT 240
******* ********** ********* ** ******** ***** **
consensus_7154#0 CCGGTTCAGGAAGCGGTACAGATATGAAATGCGCTTCTCCATA-TCGCGCCAT-TTCGTT 161
consensus_7154#3 CCGGTTCAGGAAGCGGTACAGATATGAAATGCGCTTCTCCATA-TCGCGCCAT-TTCGTT 129
consensus_7154#2 TCGGTTCAGGAAGCGGTACAGATATGAAATGCGCTTCTCCATA-TCGCGCCAT-TTCGTT 102
consensus_7154#1 CCGGTTCAGGAAGCGGTACAGATATGAAATGCGCTTCTCCATAGTCGCGCCATGTTCGTT 300
****************************************** ********* ******
consensus_7154#0 GGCCTGGCGACCGGGTAAATCGTCCGGCTAAGCATTTTTCGCTTTCGCAGCAGCACCTGA 221
consensus_7154#3 GGCCTGGCGACCGGGTAAATCGTCCGGCTAAGCATTTTTCGCTTTCGCAGCAGCACCTGA 189
consensus_7154#2 GGCCTGGCGACCGGGTAAATCGTCCGGCTAAGCATTTTTCGCTTTCGCAGCAGCACCTGA 162
consensus_7154#1 GGCCTGGCGACCGGGTAAATCGTCCGGCTAAGCATTTTTCGCTTTCGCAGCAGCACCTGA 360
************************************************************
consensus_7154#0 TACTCG-TTGCCGGACACACCGCGGA-CCAAGCTGGCACAGAGTACAGCACACGGGTAGG 279
consensus_7154#3 TACTCG-TTGCCGGACACACCGCGGAGCCAAGCCGGCACAGAGTACAGCACACGGGTAGG 248
consensus_7154#2 TACTCG-TTGCCGGACACACCGCGGAGCCAAGCCGGCACAGAGTACAGCACACGGGTAGG 221
consensus_7154#1 TACTCGGTTGCCGGACACACCGCGGAGCCAAGCCGGCACAGAGTACAGCACACGGGTAGG 420
****** ******************* ****** **************************
consensus_7154#0 ATGGAGCCGATCGTCGCCAAGAATATCGATATAATCGTTCTGGCCGAACAGTGCACGTTT 339
consensus_7154#3 ATGGAGCCGATCGTCGCCAAGAATATCGATATAATCGTTCTGGCCGAACAGTGCACGTTT 308
consensus_7154#2 ATGGAGCCGATCGTCGCCAAGAATATCGATATAATCGTTCTGGCCGAACAGTGCACGTTT 281
consensus_7154#1 ATGGA-CCGATCGTCGCCAAGAATATCGATATAATCGTTCTG-CCGAACAGTGCACGTTT 478
***** ************************************ *****************
consensus_7154#0 CTCGCACCAAGCGTTCTTGGGTTTGTAATCGGGCATTGGCAGCTTCTGTCCGTTATCTAG 399
consensus_7154#3 CTCGCACCAAGCGTTCTTGGGTTTGTAATCGGGCATTGGCAGCTTCTGTCCGTTATCTAG 368
consensus_7154#2 CTCGCACCAAGCGTTCTTGGGTTTGTAATCGGGCATTGGCAGCTTCTGTCCGTTATCTAG 341
consensus_7154#1 CTCGCACCAAGCGTTCTTGGGTTTGTAATCGGGCATTGGCAGCTTCTGTCCGTTATCTAG 538
************************************************************
consensus_7154#0 ATGGGGTAGAAGACCCCGTTGCAGTATTTTGTCCTCATAACCGTACCGCCGAATGAGCGG 459
consensus_7154#3 ATGGGGTAGAAGACCCCGTTGCAGTATTTTGTCCTCATAACCGTACCGCCGAATGAGCGG 428
consensus_7154#2 ATGGGGTAGAAGACCCCTTTGCAGTATTTTGTCCTCATAACCGTACCGCCGAATGAGCGG 401
consensus_7154#1 ATGGGGTAGAAGACCCCGTTGCAGTATTTTGTCCTCATAACCGTACCGCCGAATGAGCGG 598
***************** ******************************************
consensus_7154#0 TCCGCGAGCCACTTTGTCGGCATGATAGCGATACCGGACAGCGGTAACTTGCGGTTTCCA 519
consensus_7154#3 TCCGCGAGCCACTTTGTCGGCATGATAGCGATACCGGACAGCGGTAACTTGCGGTTTCCA 488
consensus_7154#2 TCCGCGAGCCACTTTGTCGGCATGATAGCGATACCGGACAGCGGTAACTTGCGGTTTCCA 461
consensus_7154#1 TCCGCGAGCCACTTTGTCGGCATGATAGCGATACCGGACAGCGGTAACTTGCGGTTTCCA 658
************************************************************
consensus_7154#0 GAAGCATTTTGCCAGCGATGTGAGTATGCTACCAGCAAAGGCCATTTTGTTGC--AATTC 577
consensus_7154#3 GAAGCATTTTGCCAGCGATGTGAGTATGCTACCAGCAAAGGCCATTTTGTTGC--AATTC 546
consensus_7154#2 GAAGCATTTTGCCAGCGATGTGAGTATGCTACCAGCAAAGGCCATTTTGTTGCTGAAGGA 521
consensus_7154#1 GAAGCATTT-GCCAGCGATGTGAGTATGCTACCAGCAAAGGCCATTTTGT-GC------- 709
********* **************************************** **
consensus_7154#0 ACGTTGTTTTGGCCT--GGGAAAAAGAACAACAAAGTGCCTGTAAACGATTTTCAGCGAA 635
consensus_7154#3 ACGTTGTTTTGGCC---GGACGCGTGGGCGG----------------------------- 574
consensus_7154#2 AGGGAATGAAAACCTTTTTCCAATTAAACAAACATCTGTTTTTAT-CAAACTTTGTTACA 580
consensus_7154#1 ----AATTTAAACCTGCG------------------------------------------ 723
* **
consensus_7154#0 ATTCCACACATCAAACAAGGTAGATAC--ACTCAAGGTAGGTCTTTTTAATTGCTTACTA 693
consensus_7154#3 ------------------------------------------------------------
consensus_7154#2 AAACCACTAACCAATTCACGTTGTTTCGGACGCGTGGGCGG------------------- 621
consensus_7154#1 ------------------------------------------------------------
consensus_7154#0 GAAAATGTATTGTTTGCAGCATTTTATAAACAGATTTTAACATTTATTTGTCTATGTTTT 753
consensus_7154#3 ------------------------------------------------------------
consensus_7154#2 ------------------------------------------------------------
consensus_7154#1 ------------------------------------------------------------
consensus_7154#0 CACCAGAAGATTATTTCTATACATTCACGTGCTGATATTAATCGTTCAATCAAAATTATC 813
consensus_7154#3 ------------------------------------------------------------
consensus_7154#2 ------------------------------------------------------------
consensus_7154#1 ------------------------------------------------------------
consensus_7154#0 CAATAGGCCAACAG 827
consensus_7154#3 --------------
consensus_7154#2 --------------
consensus_7154#1 --------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||