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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7170#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1020 fasta sequence
[CGTTATCGCCATTCGCTAGTTAAAGATCGCGTTCTAGACACTATGTCCCGCATCGTATCATTCACCAGCCCTGTTCCGCTGTTCTTGTTGCTCTCGCTGGCCACACTACGCGGTGACCCGTTTGTTGCGCTGCGTACATCCACCACCAATCGGACGCTGCTCTGCTGGGCCATAAAACTGTCCCCGACGGCGTACGTCACCGATGCGGAGAGTGTCCGGTCCCATCGAAAGCACCAAATTGTGATGATTTATGGTGACATTGCACCAAACCGGACCGTACAGGAGCGCTTGGGTCGAAAGGTGGCTGGCTTGCGGCAACCGGCCTGTCGCTATCGGGTGCCTTCGCTGGTGCTGGTCGGTGCCCCGGACGACAGCGAGCGATCCGTGCTGAATCGAACGGTACGCAACTTTATCGCATCCTACGGTATGGTGCAAAGCGAGCAACAACAAGCGACCTGCCGGGAGTGTCGAGTGCTGGCAATACGGCGAAACCTTCCCTGTCCGGTCACACCCGGCACGATGGCCGTGGTGTACAGCGACTGTCTTAAGCAGCTGGACGCCATCGAGATCGAACACGCTGCCAAGGTTACGTCGCAGTGGGACACTTGGGCCTGGACGTTACGGCGAAAGCTCAAAGCAACACTGTAC-GCCGATCTGGAACGGAT-GGGCCGGGCGCGGAT-GGAGATGCTCAACTTTATGACCGCAGCAAGACGCTGAACTGGTCAACTGGTCAGCGAACGAGTCGTTCGCATAAAATGTTGCAGCACGGTCGTAAAAGCTTTAGTCGTTTAAGGTGCAGTCCGGTGCCGATGTGGACGTGCTTGGTTTGTGTCCTAGAACAGGTGGCGGTACTACTTCTGTACCCTTTCCTGCCACGAGTGGAGAAGCATTTTATGGGATCAAATGCTGAGTAAATTCTCACAAAAGTTGCATATTGATTGCTCGCCACTCGACTCGATACGTGGGCTGCAATAAAACAAATACTGTAGATGCATGCGAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CNS09D8Z [CGTTATCGCCATTCGCTAGTTAAAGATCGCGTTCTAGACACTATGTCCCGCATCGTATCATTCACCAGCCCTGTTCCGCTGTTCTTGTTGCTCTCGCTGGCCACACTACGCGGTGACCCGTTTGTTGCGCTGCGTACATCCACCACCAATCGGACGCTGCTCTGCTGGGCCATAAAACTGTCCCCGACGGCGTACGTCACCGATGCGGAGAGTGTCCGGTCCCATCGAAAGCACCAAATTGTGATGATTTATGGTGACATTGCACCAAACCGGACCGTACAGGAGCGCTTGGGTCGAAAGGTGGCTGGCTTGCGGCAACCGGCCTGTCGCTATCGGGTGCCTTCGCTGGTGCTGGTCGGTGCCCCGGACGACAGCGAGCGATCCGTGCTGAATCGAACGGTACGCAACTTTATCGCATCCTACGGTATGGTGCAAAGCGAGCAACAACAAGCGACCTGCCGGGAGTGTCGAGTGCTGGCAATACGGCGAAACCTTCCCTGTCCGGTCACACCCGGCACGATGGCCGTGGTGTACAGCGACTGTCTTAAGCAGCTGGACGCCATCGAGATCGAACACGCTGCCAAGGTTACGTCGCAGTGGGACACTTGGGCCTGGACGTTACGGCGAAAGCTCAAAGCAACACTGTAC GCCGATCTGGAACGGAT GGGCCGGGCGCGGAT GGAGATGCTCAACTTTATGACCGCAGCAAGACGCTGAACTGGTCAACTGGTCAGCGAACGAGTCGTTCGCATAAAATGTTGCAGCACGGTCGTAAAAGCTTTAGTCGTTTAAGGTGCAGTCCGGTGCCGATGTGGACGTGCTTGGTTTGTGTCCTAGAACAGGTGGCGGTACTACTTCTGTACCCTTTCCTGCCACGAGTGGAGAAGCATTTTATGGGATCAAATGCTGAGTAAA ]
[+] EMBL BM650837 [ ccGATCGCGTTCTAGACACTATGTCCCGCATCGTATCATTCATCAGCCCTGTTCCGCTGTTCTTGTTGCTCTCGCTGGCCACACTACGCGGTGACCCGTTTGTTGCGCTGCGTACATCCACCACCAATCGGACGCTGCTCTGCTGGGCCATAAAACTGTCCCCGACGGCGTACGTCACCGATGCGGAGTGTGTCCGGTCCCATCGAAAGCACCAAATTGTGATGATTTATGGTGACATTGCACCGCACCGGACCGTACAGGAGCGCTTGGGTCGAAAGGTGGCTAGCTTGCGGCAACCGGCCTGTCGCTATCGGGTGCCTTCGCTGGTGCTGGTCGGTGCCCCGGACGACAGCGAGCGATCCGTGCTGAATCGAACGGTACGCAACTTTATCGCATCCTACGGTATGGTGCAAAGCGAGCAACAACAAGCGACCTGCCGGGAGTGTCGAGTGCTGGCAATACGACGAA ]
[+] EMBL CF541692 [ CACTACGCGGTGACCCGTTTGTTGCGCTGCGTACATCCACCACCAATCGGACGCTGCTCTGCTGGGCCATAAAACTGTCCCCGACGGCGTACGTCACCGATGCGGAGTGTGTCCGGTCCCATCGAAAGCACCAAATTGTGATGATTTATGGTGACATTGCACCGAACCGGACCGTACAGGAGCGCTTGGGTCGAAAGGTGGCTGGCTTGCGGCAACCGGCCTGTCGCTATCGGGTGCCTTCGCTGGTGCTGGTCGGTGCCCCGGACGACAGCGAGCGATCCGTGCTGAATCGAACGGTACGCAACTTTATCGCATCCTACGGTATGGTGCAAAGCGAGCAACAACAAGCGACCTGCCGGGAGTGTCGAGTGCTGGCAATACGACGAAACCTTCCCTGTCCGGTCACACCCGGCACGATGGCCGTGGTGTACAGCGACTGTCTTAAGCAGCTGGACGCCATCGAGATCGAACACGCTGCCAAGGTTACGTCGCAGTGGGACACTTGGGCCTGGACGTTACNGCGNNAGCTCAAAGCAACACTGTACANCCGATCTGGAACGGATGGGGCCGGGCGCGGATGGGAGATGCTCANCTTTATGACCGCAGCAAGACGCTGAACTGGTCAAC GGTCAGCGAACGAGTCGTNCGCATAAAATGTTGCANAACGGTCGTAAAAG ]
[-] EMBL CNS09D90 [ TGACCCGTTTGTTGCGCTGCGTACATCCACCACCAATCGGACGCTGTTCTGCTGGGCCATAAAACTGTCCCCGACGGCGTACGTCACCGATGCGGAGAGTGTCCGGTCCCATCGAAAGCACCAAATTGTGATGATTTATGGTGACATTGCACCAAACCGGACCGTACAGGAGCGCTTGGGTCGAAAGGTGGCTGGCTTGCGGCAACCGGCCTGTCGCTATCGGGTGCCTTCGCTGGTGCTGGTCGGTGCCCCGGACGACAGCGAGCGATCCGTGCTGAATCGAACGGTACGCAACTTTATCGCAT CTACGGTATGGTGCAAAGCGAGCAACAACAAGCGACCTGCCGGGAGTGTCGAGTGCTGGCAATACGGCGAAACCTTCCCTGTCCGGTCACACCCGGCACGATGGCCGTGGTGTACAGCCACTGTCTTAAGCAGCTGGACGCCATCGAGATCGAACACGCTGCCAAGGTTACGTCGCAGTGGGACACTTGGGCCTGGACGTTACGGCGAAAGCTCAAAGCAACACTGTAC GCCGATCTGGAACGGAT GGGCCGGGCGCGGAT GGAGATGCTCAACTTTATGACCGCAGCAAGACGCTGAACTGGTCAACTGGTCAGCGAACGAGTCGTTCGCATAAAATGTTGCAGCACGGTCGTAAAAGCTTTAGTCGTTTAAGGTGCAGTCCGGTGCCGATGTGGACGTGCTTGGTTTGTGTCCTAGAACAGGTGGCGGTACTACTTCTGTACCCTTTCCTGCCACGAGTGGAGAAGCATTTTATGGGATCAAATGCTGAGTAAATTCTCACAAAAGTTGCATATTGATTGCTCGCCACTCGACTCGATACGTGGGCTGCAATAAAACAAATACTGTAGATGCATGCGAAAAA ]
[+] EMBL CNS09KL5 [ CCGGGCGCGGAT GGAGATGCTCAACTTTATGACCGCAGCAAGACGCTGAACTGGTCAACTGGTCAGCGAACGAGTCGTTCGCATAAAATGTTGCAGCACGGTCGTAAAAGCTTTAGTCGTTTAAGGTGCAGTCCGGTGCCGATGTGGACGTGCTTGGTTTGTGTCCTAGAACAGGTGGCGGTACTACTTCTGTACCCTTTCCTGCCACGAGTGGAGAAGCATTTTATGGGATCAAATGCTGAGTAAATTCTCACAACAGTTGCATATTGATTGCTCGCCACTCGACTCGATACGTGGGCTGCAATAAAACAAATACTGTAGATGCAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_7170#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 505 fasta sequence
[GCAGAGCTCCGATCACCATCGGGAAGGTGAAAATGGTAAAAAGTGTCCACCCAGCGGTGCAATTACTGTTTGCCTACGGCAAATCGATAAATCAATCCTTCGCTAGTTAAAGATCGCGTTCTAGACACTATGTCCCGCATCGTATCATTCATCAGCCCTGTTCCGCTGTTCTTGTTGCTCTCGCTGGCCACACTACGCGGTGACCCGTTTGTTGCGCTGCGTACATCCACCACCAATCGGACGCTGCTCTGCTGGGCCATAAAACTGTCCCCGACGGCGTACGTCACCGATGCGGAGTGTGTCCGGTCCCATCGAAAGCACCAAATTGTGATGATTTATGGTGACATTGCACCGAACCGGACCGTACAGGAGCGCTTGGGTCGAAAGGTGGCAGGCTTGCGGCAACCGGCCTGTCGCTATCGGGTGCCTTCGCTGGTGCTGGTCGGTGCCCCGGACGACAGCGAGCGATCCGTGCTGAATCGAACGGTACGCAACTTTATCGCAT]
[+] EMBL AGA302661 [GCAGAGCTCCGATCACCATCGGGAAGGTGAAAATGGTAAAAAGTGTCCACCCAGCGGTGCAATTACTGTTTGCCTACGGCAAATCGATAAATCAATCCTTCGCTAGTTAAAGATCGCGTTCTAGACACTATGTCCCGCATCGTATCATTCATCAGCCCTGTTCCGCTGTTCTTGTTGCTCTCGCTGGCCACACTACGCGGTGACCCGTTTGTTGCGCTGCGTACATCCACCACCAATCGGACGCTGCTCTGCTGGGCCATAAAACTGTCCCCGACGGCGTACGTCACCGATGCGGAGTGTGTCCGGTCCCATCGAAAGCACCAAATTGTGATGATTTATGGTGACATTGCACCGAACCGGACCGTACAGGAGCGCTTGGGTCGAAAGGTGGCAGGCTTGCGGCAACCGGCCTGTCGCTATCGGGTGCCTTCGCTGGTGCTGGTCGGTGCCCCGGACGACAGCGAGCGATCCGTGCTGAATCGAACGGTACGCAACTTTATCGCAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7170#0 ------------------------------------------------------------
consensus_7170#1 GCAGAGCTCCGATCACCATCGGGAAGGTGAAAATGGTAAAAAGTGTCCACCCAGCGGTGC 60
consensus_7170#0 ------------------------CGTTA---TCGCCATTCGCTAGTTAAAGATCGCGTT 33
consensus_7170#1 AATTACTGTTTGCCTACGGCAAATCGATAAATCAATCCTTCGCTAGTTAAAGATCGCGTT 120
** ** * **********************
consensus_7170#0 CTAGACACTATGTCCCGCATCGTATCATTCACCAGCCCTGTTCCGCTGTTCTTGTTGCTC 93
consensus_7170#1 CTAGACACTATGTCCCGCATCGTATCATTCATCAGCCCTGTTCCGCTGTTCTTGTTGCTC 180
******************************* ****************************
consensus_7170#0 TCGCTGGCCACACTACGCGGTGACCCGTTTGTTGCGCTGCGTACATCCACCACCAATCGG 153
consensus_7170#1 TCGCTGGCCACACTACGCGGTGACCCGTTTGTTGCGCTGCGTACATCCACCACCAATCGG 240
************************************************************
consensus_7170#0 ACGCTGCTCTGCTGGGCCATAAAACTGTCCCCGACGGCGTACGTCACCGATGCGGAGAGT 213
consensus_7170#1 ACGCTGCTCTGCTGGGCCATAAAACTGTCCCCGACGGCGTACGTCACCGATGCGGAGTGT 300
********************************************************* **
consensus_7170#0 GTCCGGTCCCATCGAAAGCACCAAATTGTGATGATTTATGGTGACATTGCACCAAACCGG 273
consensus_7170#1 GTCCGGTCCCATCGAAAGCACCAAATTGTGATGATTTATGGTGACATTGCACCGAACCGG 360
***************************************************** ******
consensus_7170#0 ACCGTACAGGAGCGCTTGGGTCGAAAGGTGGCTGGCTTGCGGCAACCGGCCTGTCGCTAT 333
consensus_7170#1 ACCGTACAGGAGCGCTTGGGTCGAAAGGTGGCAGGCTTGCGGCAACCGGCCTGTCGCTAT 420
******************************** ***************************
consensus_7170#0 CGGGTGCCTTCGCTGGTGCTGGTCGGTGCCCCGGACGACAGCGAGCGATCCGTGCTGAAT 393
consensus_7170#1 CGGGTGCCTTCGCTGGTGCTGGTCGGTGCCCCGGACGACAGCGAGCGATCCGTGCTGAAT 480
************************************************************
consensus_7170#0 CGAACGGTACGCAACTTTATCGCATCCTACGGTATGGTGCAAAGCGAGCAACAACAAGCG 453
consensus_7170#1 CGAACGGTACGCAACTTTATCGCAT----------------------------------- 505
*************************
consensus_7170#0 ACCTGCCGGGAGTGTCGAGTGCTGGCAATACGGCGAAACCTTCCCTGTCCGGTCACACCC 513
consensus_7170#1 ------------------------------------------------------------
consensus_7170#0 GGCACGATGGCCGTGGTGTACAGCGACTGTCTTAAGCAGCTGGACGCCATCGAGATCGAA 573
consensus_7170#1 ------------------------------------------------------------
consensus_7170#0 CACGCTGCCAAGGTTACGTCGCAGTGGGACACTTGGGCCTGGACGTTACGGCGAAAGCTC 633
consensus_7170#1 ------------------------------------------------------------
consensus_7170#0 AAAGCAACACTGTACGCCGATCTGGAACGGATGGGCCGGGCGCGGATGGAGATGCTCAAC 693
consensus_7170#1 ------------------------------------------------------------
consensus_7170#0 TTTATGACCGCAGCAAGACGCTGAACTGGTCAACTGGTCAGCGAACGAGTCGTTCGCATA 753
consensus_7170#1 ------------------------------------------------------------
consensus_7170#0 AAATGTTGCAGCACGGTCGTAAAAGCTTTAGTCGTTTAAGGTGCAGTCCGGTGCCGATGT 813
consensus_7170#1 ------------------------------------------------------------
consensus_7170#0 GGACGTGCTTGGTTTGTGTCCTAGAACAGGTGGCGGTACTACTTCTGTACCCTTTCCTGC 873
consensus_7170#1 ------------------------------------------------------------
consensus_7170#0 CACGAGTGGAGAAGCATTTTATGGGATCAAATGCTGAGTAAATTCTCACAAAAGTTGCAT 933
consensus_7170#1 ------------------------------------------------------------
consensus_7170#0 ATTGATTGCTCGCCACTCGACTCGATACGTGGGCTGCAATAAAACAAATACTGTAGATGC 993
consensus_7170#1 ------------------------------------------------------------
consensus_7170#0 ATGCGAAAAAAAAAAAAAAAAAAAAAA 1020
consensus_7170#1 ---------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||