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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7171#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1816 fasta sequence
[CAGAATCGCCCCGAGGCNTGAACAAAATCCGGCCGACCGTTTGGGCTGCAATCGCGACTCCGCCTTCCTGGACATTATGAATCATTCGTTCTTCAAGAGCATTGACTGGGAGATGCTCGAGCAAAAGCAAATTACGCCACCGTTCCGCCCGCGGCTAGACTCCGATCGCGATTTGGCCAACTTCCCGCCTGAGTTCACCGACGAACCGGTCCACCTAACGCCGGACGATGATCGCGTCATCGACAAGATCGATCAATCCGAGTTCGAAGGATTCGAGTATGTGAACCCGTTGCTGATGTCGTTGGAAGACTGCGTTTGACATCACGCATCCTGCGAGCTGCATCCGTACAACATGCAGCTATACGGTGACGATTCTAGCGATTACGATTCCGTTGTGGATGAGCTAAGCATCCTTCAATTACCTCCGCCACCATCGAAGAGTTTGCTGCAGCACATGTTTTGCCTTCCATTGAACTAGCCACAAGCGTTGTAGCCCTCTCCGTGCAACCAATCTGCAAACTCTTAGCTGAGTGAGAACGACGGCACAGTGATGACAGCGACTACCGGAGCAGAAGCAACCCTCTGTGTGACACTGTACTAAACCGACAGAATCACTGCGCAACCTTAACCACGAGAACAGGAATTACTTCAGCGATGTGTTTGATTTTTAGGAGTTAGCTAAAATCGCGTTCTTATATTTTTTGAGTACTTTGCGCGGGAGATGAAAAATAGATCCGGATTATTTGGTTTTGCGGTCAAAATGAGAGAAAGAGTTGATTTTTTTGTGGTCTGAGAAGTGTCTATGTGTGCGTGTTTGCATGATGCGCAAGGGAAGCTAGAAAACATTCCATTCATAAATTAGTAGTTGAAGAAATACAGCTAATGAATAAGATAATGAAACATAGTAGCAGCAAAACTGATTGCTGATGAAACACAAACGCAAGCGCGCTGGTTCGATGACGCTTAGAGGAAGTGCGTATCATTTCCTTCCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTTTATCTCTCTGTACTATCCATTTCTGCAACCATACCGATGTCGTTAACCTAAATCACAGTCCCATTTTGTAACGTTTATTATCTATGCTTTGTATTTTGTATTTGTATTACATTGAAGTGTTTTCGCTGCAAAGAAAGATAGGAAGAAGTATGAGTAACAAAAAAAAGTGAAACTACAACGGAAACGGAGTGCGAGCAGTGATGAAACGAACACGAATGCATGATCCGTGACTAAAAGGAAAAAGAAAAACCTTGTTCTAGAATAACACAAGCCCAGAATGGAAGCGGAAAAGCAGCAGAAACAAAACACTAAAACCTCTAGCAGACTATGGACACTAAACATATTTAACAAGAACTTATCATACAAACGTAAAAGAGAGTTTCAAATTCAAAACATGAACCCCCCCATACTAAATCAAACAGTCGCCCTTGTGCATCATTGTATTGCAAAAAACAAAGAACAAACAAAAGGAAGAAGTAACGAATAAAATCACAATTGCTATGTAGAATTATAGGAGGTTTTGCGATAAACGACGATGGAATAGAGAAAAACAAACAAACAAACAAACAATTTAATGATTCCGCTACTCCTTGCGCCAAGTTTGCGATTATTAGTAGCGCGTGTTGGCAACATTTCCACGTGCAGGCGTTTTGTTTCTCTTTCTTCCTCACACTCTCTTTCTCCGATGCAAATGCGATTCGTGTTCGGTTTTGTTTTTCGCGGAGAAAGTGCATGACTACTGCGAACGAGCATTAACCACTTATTATAAACG]
[+] EMBL AL935001 [CAGAATCGCCCCGAGGCNTGAACAAAATCCGGCCGACCGTTTGGGCTGCAATCGCGACTCCGCCTTCCTGGACATTATGAATCATTCGTTCTTCAAGAGCATTGACTGGGAGATGCTCGAGCAAAAGCAAATTACGCCACCGTTCCGCCCGCGGCTAGACTCCGATCGCGATTTGGCCAACTTCCCGCCTGAGTTCACCGACGAACCGGTCCACCTAACGCCGGACGATGATCGCGTCATCGACAAGATCGATCAATCCGAGTTCGAAGGATTCGAGTATGTGAACCCGTTGCTGATGTCGTTGGAAGACTGCGTTTGACATCACGCATCCTGCGAGCTGCATCCGTACAACATGCAGCTATACGGTGACGATTCTAGCGATTACGATTCCGTTGTGGATGAGCTAAGCATCCTTCAATTACCTCCGCCACCATCGAAGAGTTTGCTGCAGCACATGTTTTGCCTTCCATTGAACTAGCCACAAGCGTTGTAGCCCTCTCC ]
[+] EMBL BM625255 [ ccgCGAAGAGTTTGCTGCAGCACATGTTTTGCCTTCCATTGAACTAGCCACAAGCGTTGTAGCCCTCTCCGTGCAACCAATCTGCAAACTCTTAGCTGAGTGAGAACGACGGCACAGTGATGACAGCGACTACCGGAGCAGAAGCAACCCTCTGTGTGACACTGTACTAAACCGACAGAATCACTGCGCAACCTTAACCACGAGAACAGGAATTACTTCAGCGATGTGTTTGATTTTTAGGAGTTAGCTAAAATCGCGTTCTTATATTTTTTGAGTACTTTGCGCGGGAGATGAAAAATAGATCCGGATTATTTGGTTTTGCGGTCAAAATGAGAGAAAGAGTTGATTTTTTTGTGGTCTGAGAAGTGTCTATGTGTGCGTGTTTGCATGATGCGCAAGGGAAGCTAGAAAACATTCCATTCATAAATTAGTAGTTGAAGAAATACAGCTAATGAATAAGATAATGAAACATAGTAGCAGCAAAAC ]
[+] EMBL BM622970 [ CCGCGAGAACAGGAATTACTTCAGCGATGTGTTTGATTTTTAGGAGTTAGCTAAAATCGCGTTCTTATATTTTTTGAGTACTTTGCGCGGGAGATGAAAAATAGATCCGGATTATTTGGTTTTGCGGTCAAAATGAGAGAAAGAGTTGATTTTTTTGTGGTCTGAGAAGTGTCTATGTGTGCGTGTTTGCATGATGCGCAAGGGAAGCTAGAAAACATTCCATTCATAAATTAGTAGTTGAAGAAATACAGCTAATGAATAAGATAATGAAACATAGTAGCAGCAAAACTGATTGCTGATGAAACACAAACGCAAGCGCGCTGGTTCGATGACGCTTAGAGGAAGTGCGTATCATTTCCTTCCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTTTATC ]
[+] EMBL BX618035 [ TTAGCTAAAATCGCGTTCTTATATTTTTTGAGTACTTTGCGCGGGAGATGAAAAATAGATCCGGATTATTTGGTTTTGCGGTCAAAATGAGAGAAAGAGTTGATTTTTTTGTGGTCTGAGAAGTGTCTATGTGTGCGTGTTTGCATGATGCGCAAGGGAAGCTAGAAAACATTCCATTCATAAATTAGTAGTTGAAGAAATACAGCTAATGAATAAGATAATGAAACATAGTAGCAGCAAAACTGATTGCTGATGAAACACAAACGCAAGCGCGCTGGTTCGATGACGCTTAGAGGAAGTGCGTATCATTTCCTTCCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTTTATCTCTCTGTACTATCCATTTCTGCAACCATACCGATGTCGTTAACCTAAATCACAGTCCCATTTTGTAACGTTTATTATCTATGCTTTGTATTTTGTATTTGTATTACATTGAAGTGTTTTCGCTGCAAAGAAAGATAGGAAGAAG ]
[+] EMBL BX628693 [ AACGTTTATTATCTATGCTTTGTATTTTGTATTTGTATTACATTGAAGTGTTTTCGCTGCAAAGAAAGATAGGAAGAAGTATGAGTAACAAAAAAAAGTGAAACTACAACGGAAACGGAGTGCGAGCAGTGATGAAACGAACACGAATGCATGATCCGTGACTAAAAGGAAAAAGAAAAACCTTGTTCTAGAATAACACAAGCCCAGAATGGAAGCGGAAAAGCAGCAGAAACAAAACACTAAAACCTCTAGCAGACTATGGACACTAAACATATTTAACAAGAACTTATCATACAAACGTAAAAGAGAGTTTCAAATTCAAAACATGAACCCCCCCATACTAAATCAAACAGTCGCCCTTGTGCATCATTGTATTGCAAAAAACAAAGAACAAACAAAAGGAAGAAGTAACGAATAAAATCACAATTGCTATGTAGAATTATAGGAGGTTTTGCGATAAACGACGATGGAATAGAGAAAAACAAACAAACAAACAAACAATTTAATGATTCCGCTACTCCTTGCGCCAAGTTTGCGATTATTAGTAGCGCGTGTTGGCAACATTTCCACGTGCAGGCGTTTTGTTTCTCTTTCTTCCTCACACTCTCTTTCTCCGATGCAAATGCGATTCGTGTTCGGTTTTGTTTTTCGCGGAGAAAGTGCATGACTACTGCGAACGAGCATTAACCACTTATTATAAACG]
consensusID : consensus_7171#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 574 fasta sequence
[CACAAGCGTTGTAGCCCTCTCCGTGCAACAATCTGCAAACTCTTAGCTGAGTGAGAACGACGGCACAGTGATGACAGCGACTACCGGAGCAGGAGCAACCCTCTGTGTGACACTGTACTAAACCGACAGAATCACTGCGCAACCTTAACCACGAGAACAGGAATTACTTCAGCGATGTGTTTGATTTTTAGGAGTAAGCTAAAATCGCGTTCTTATATTTTTTGAGTACTTTGCGCGGGAGATGAAAAATAGATCCGGATTATTTGGTTTTGCGGTCAAAATGAGAGAAAGAGTTGATTTTTTTGTGGTCTGAGAAGTGTCTATGTGTGCGTGTTTGCATGATGCGCAAGGGAAGCTAGAAAACATTCCATTCATAAATTAGTAGTTGAAGAAATACAGCTAATGAATAAGATAATGAAACATAGTAGCAGCAAAACTGATTGCTGATGAAACACAAACGCAAGCGCGCTGGTTCGATGACGCTTAGAGGAAGTGCGTATCATTTCCTTCCTTTTCTCTCTCTCTCTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCGC]
[+] EMBL CNS09FU7 [CACAAGCGTTGTAGCCCTCTCCGTGCAACAATCTGCAAACTCTTAGCTGAGTGAGAACGACGGCACAGTGATGACAGCGACTACCGGAGCAGGAGCAACCCTCTGTGTGACACTGTACTAAACCGACAGAATCACTGCGCAACCTTAACCACGAGAACAGGAATTACTTCAGCGATGTGTTTGATTTTTAGGAGTAAGCTAAAATCGCGTTCTTATATTTTTTGAGTACTTTGCGCGGGAGATGAAAAATAGATCCGGATTATTTGGTTTTGCGGTCAAAATGAGAGAAAGAGTTGATTTTTTTGTGGTCTGAGAAGTGTCTATGTGTGCGTGTTTGCATGATGCGCAAGGGAAGCTAGAAAACATTCCATTCATAAATTAGTAGTTGAAGAAATACAGCTAATGAATAAGATAATGAAACATAGTAGCAGCAAAACTGATTGCTGATGAAACACAAACGCAAGCGCGCTGGTTCGATGACGCTTAGAGGAAGTGCGTATCATTTCCTTCCTTTTCTCTCTCTCTCTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7171#0 CAGAATCGCCCCGAGGCNTGAACAAAATCCGGCCGACCGTTTGGGCTGCAATCGCGACTC 60
consensus_7171#1 ------------------------------------------------------------
consensus_7171#0 CGCCTTCCTGGACATTATGAATCATTCGTTCTTCAAGAGCATTGACTGGGAGATGCTCGA 120
consensus_7171#1 ------------------------------------------------------------
consensus_7171#0 GCAAAAGCAAATTACGCCACCGTTCCGCCCGCGGCTAGACTCCGATCGCGATTTGGCCAA 180
consensus_7171#1 ------------------------------------------------------------
consensus_7171#0 CTTCCCGCCTGAGTTCACCGACGAACCGGTCCACCTAACGCCGGACGATGATCGCGTCAT 240
consensus_7171#1 ------------------------------------------------------------
consensus_7171#0 CGACAAGATCGATCAATCCGAGTTCGAAGGATTCGAGTATGTGAACCCGTTGCTGATGTC 300
consensus_7171#1 ------------------------------------------------------------
consensus_7171#0 GTTGGAAGACTGCGTTTGACATCACGCATCCTGCGAGCTGCATCCGTACAACATGCAGCT 360
consensus_7171#1 ------------------------------------------------------------
consensus_7171#0 ATACGGTGACGATTCTAGCGATTACGATTCCGTTGTGGATGAGCTAAGCATCCTTCAATT 420
consensus_7171#1 ------------------------------------------------------------
consensus_7171#0 ACCTCCGCCACCATCGAAGAGTTTGCTGCAGCACATGTTTTGCCTTCCATTGAACTAGCC 480
consensus_7171#1 -----------------------------------------------------------C 1
*
consensus_7171#0 ACAAGCGTTGTAGCCCTCTCCGTGCAACCAATCTGCAAACTCTTAGCTGAGTGAGAACGA 540
consensus_7171#1 ACAAGCGTTGTAGCCCTCTCCGTGCAAC-AATCTGCAAACTCTTAGCTGAGTGAGAACGA 60
**************************** *******************************
consensus_7171#0 CGGCACAGTGATGACAGCGACTACCGGAGCAGAAGCAACCCTCTGTGTGACACTGTACTA 600
consensus_7171#1 CGGCACAGTGATGACAGCGACTACCGGAGCAGGAGCAACCCTCTGTGTGACACTGTACTA 120
******************************** ***************************
consensus_7171#0 AACCGACAGAATCACTGCGCAACCTTAACCACGAGAACAGGAATTACTTCAGCGATGTGT 660
consensus_7171#1 AACCGACAGAATCACTGCGCAACCTTAACCACGAGAACAGGAATTACTTCAGCGATGTGT 180
************************************************************
consensus_7171#0 TTGATTTTTAGGAGTTAGCTAAAATCGCGTTCTTATATTTTTTGAGTACTTTGCGCGGGA 720
consensus_7171#1 TTGATTTTTAGGAGTAAGCTAAAATCGCGTTCTTATATTTTTTGAGTACTTTGCGCGGGA 240
*************** ********************************************
consensus_7171#0 GATGAAAAATAGATCCGGATTATTTGGTTTTGCGGTCAAAATGAGAGAAAGAGTTGATTT 780
consensus_7171#1 GATGAAAAATAGATCCGGATTATTTGGTTTTGCGGTCAAAATGAGAGAAAGAGTTGATTT 300
************************************************************
consensus_7171#0 TTTTGTGGTCTGAGAAGTGTCTATGTGTGCGTGTTTGCATGATGCGCAAGGGAAGCTAGA 840
consensus_7171#1 TTTTGTGGTCTGAGAAGTGTCTATGTGTGCGTGTTTGCATGATGCGCAAGGGAAGCTAGA 360
************************************************************
consensus_7171#0 AAACATTCCATTCATAAATTAGTAGTTGAAGAAATACAGCTAATGAATAAGATAATGAAA 900
consensus_7171#1 AAACATTCCATTCATAAATTAGTAGTTGAAGAAATACAGCTAATGAATAAGATAATGAAA 420
************************************************************
consensus_7171#0 CATAGTAGCAGCAAAACTGATTGCTGATGAAACACAAACGCAAGCGCGCTGGTTCGATGA 960
consensus_7171#1 CATAGTAGCAGCAAAACTGATTGCTGATGAAACACAAACGCAAGCGCGCTGGTTCGATGA 480
************************************************************
consensus_7171#0 CGCTTAGAGGAAGTGCGTATCATTTCCTTCCTTTTCTCTCTCTCTCTCTCTCTCTCTCTC 1020
consensus_7171#1 CGCTTAGAGGAAGTGCGTATCATTTCCTTCCTTTTCTCTCTCTCTCTCTAAAAAAAAAAA 540
*************************************************
consensus_7171#0 TCTCTCTCTCTCTTTCTCTCTCTTTATCTCTCTGTACTATCCATTTCTGCAACCATACCG 1080
consensus_7171#1 AAAAAAAAAAAAAAAAAAAAGGCC-ACATGTGCGC------------------------- 574
* * * *
consensus_7171#0 ATGTCGTTAACCTAAATCACAGTCCCATTTTGTAACGTTTATTATCTATGCTTTGTATTT 1140
consensus_7171#1 ------------------------------------------------------------
consensus_7171#0 TGTATTTGTATTACATTGAAGTGTTTTCGCTGCAAAGAAAGATAGGAAGAAGTATGAGTA 1200
consensus_7171#1 ------------------------------------------------------------
consensus_7171#0 ACAAAAAAAAGTGAAACTACAACGGAAACGGAGTGCGAGCAGTGATGAAACGAACACGAA 1260
consensus_7171#1 ------------------------------------------------------------
consensus_7171#0 TGCATGATCCGTGACTAAAAGGAAAAAGAAAAACCTTGTTCTAGAATAACACAAGCCCAG 1320
consensus_7171#1 ------------------------------------------------------------
consensus_7171#0 AATGGAAGCGGAAAAGCAGCAGAAACAAAACACTAAAACCTCTAGCAGACTATGGACACT 1380
consensus_7171#1 ------------------------------------------------------------
consensus_7171#0 AAACATATTTAACAAGAACTTATCATACAAACGTAAAAGAGAGTTTCAAATTCAAAACAT 1440
consensus_7171#1 ------------------------------------------------------------
consensus_7171#0 GAACCCCCCCATACTAAATCAAACAGTCGCCCTTGTGCATCATTGTATTGCAAAAAACAA 1500
consensus_7171#1 ------------------------------------------------------------
consensus_7171#0 AGAACAAACAAAAGGAAGAAGTAACGAATAAAATCACAATTGCTATGTAGAATTATAGGA 1560
consensus_7171#1 ------------------------------------------------------------
consensus_7171#0 GGTTTTGCGATAAACGACGATGGAATAGAGAAAAACAAACAAACAAACAAACAATTTAAT 1620
consensus_7171#1 ------------------------------------------------------------
consensus_7171#0 GATTCCGCTACTCCTTGCGCCAAGTTTGCGATTATTAGTAGCGCGTGTTGGCAACATTTC 1680
consensus_7171#1 ------------------------------------------------------------
consensus_7171#0 CACGTGCAGGCGTTTTGTTTCTCTTTCTTCCTCACACTCTCTTTCTCCGATGCAAATGCG 1740
consensus_7171#1 ------------------------------------------------------------
consensus_7171#0 ATTCGTGTTCGGTTTTGTTTTTCGCGGAGAAAGTGCATGACTACTGCGAACGAGCATTAA 1800
consensus_7171#1 ------------------------------------------------------------
consensus_7171#0 CCACTTATTATAAACG 1816
consensus_7171#1 ----------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||