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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7173#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 679 fasta sequence
[CCGGTGACGACGTGCATCTTTGGTCCGGTTCCTGTGGCGCTCCTGCGAGGTGAACGTAGTAGAGCGCTCGAAGGTGCGTGTATCGTTCTTCCAGAGCAGCAAACCGCAATCAATCAGTCCGCCGGAGTCGCTGCACCTGTACGGTGGGCAAAGTTTGATCCATTTCGGTAACGGCGGCGGCAGCGGCGGTGACGGCGGCTATGATAACAACAACTCGCCGCTAGACACCTACATCACCTCGGCCGCGCTCAACCAGCAGTACGACGCGCTGTCCAGCCATCAGCAGCAGCAGCAGCACGCACACTTTCATCCGGACCACCGGGATCCCGACATGGCGGCTGTCTACGGAGGTGCCAACGTGCCGCCAACGGCCTTTAACCGACAAATGAGTACCGAGTCAGGCTGGGACAATCCATTCAGACCGGGCGGCGACCTGTCGAGGGAGGCGGACGAAATAGTCAATCTGATCAAAGGTGGCAAACCGATCACACCAACCGGCGACCAAAGTTTAGTGAACGGCAGCACGCCTAAGGACAGCCACAGCACCGACGACCCGGACACGACGGGTTGTGGACGGTGCGGTAGCAAAGCACGAGGCCTCGCAGCTGCAGGCGGCGGCGGCCCAGCAGCACGACACCGATCAGCAACCAGGTGATACCCGGTCCCCAGTCCGCGTCGC]
[+] EMBL BM628100 [CCGGTGACGACGTGCATCTTTGGTCCGGTTCCTGTGGCGCTCCTGCGAGGTGAACGTAGTAGAGCGCTCGAAGGTGCGTGTATCGTTCTTCCAGAGCAGCAAACCGCAATCAATCAGTCCGCCGGAGTCGCTGCACCTGTACGGTGGGCAAAGTTTGATCCATTTCGGTAACGGCGGCGGCAGCGGCGGTGACGGCGGCTATGATAACAACAACTCGCCGCTAGACACCTACATCACCTCGGCCGCGCTCAACCAGCAGTACGACGCGCTGTCCAGCCATCAGCAGCAGCAGCAGCACGCACACTTTCATCCGGACCACCGGGATCCCGACATGGCGGCTGTCTACGGAGGTGCCAACGTGCCGCCAACGGCCTTTAACCGACAAATGAGTACCGAGTCAGGCTGGGACAATCCATTCAGACCGGGCGGCGACCTGTCGAGGGAGGCGGACGAAATAGTCAATCTGATCAAAGGTGGCAAACCGATCACACCAACCGGCGACCAAAGTTTAGTGAACGGCAGCACGCCTAAGGACAGCCACAGCACCGACGACCCGGACACGACGGGTTGTGGACGGTGCGGTAGCAAAGCACGAGGCCTCGCAGCTGCAGGCGGCGGC ]
[+] EMBL BM575067 [ ccgGTAGTAGAGCGCTCGAAGGTGCGTGTATCGTTCTTCCAGAGCAGCAAACCGCAATCAATCAGTCCGCCGGAGTCGCTGCACCTGTACGGTGGGCAAAGTTTGATCCATTTCGGTAACGGCGGCGGCAGCGGCGGTGACGGCGGCTATGATAACAACAACTCGCCGCTAGACACCCACATCACCTCGGCCGCGCTCAACCAGCAGTACGACGCGCTGTCCAGCCATCAGCAGCAGCAGCAGCACGCACACTTTCATCCGGACCACCGGGATCCCGACATGGCGGCTGTCTACGGAGGTGCCAACGTGCCGCCAACGGCCTTTAACCGACAAATGAGTACCGAGTCAGGCTGGGACAATCCATTCAGACCGGGCGGCGACCTGTCGAGGGAGGCGGACGAAATAGTCAATCTGATCAAAGGTGGCAAACCGATCACACCAACCGGCGACCAAAGTTTAGTGAACGGCAGCACGCCTAAGGACAGCCACAGCACCGACGACCCGGACACGAC GGTTGTGGACGGTGCGGTAGCAAAGCACGAGGCCTCGCAGCTGCAGGCGGCGGCGGCCCAGCAGCACGACACCGATCAGCAACCAGGTGATACCCGGTCCCCAGTCCGCGTCGC]
consensusID : consensus_7173#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 622 fasta sequence
[CCGTGAAAAGAGTATCGTTCGGCTCGTCCAAAGGTTCGATGGTGGAAACGCTGGTGTTCGAGACGCCCACCCCCCTGCCAGAGCACGCCGAGCGGGAGTTCTTTCAGTCGCCGGCCGTGCTGGCCGGCGCCGGCCACACAACCGTGTACAGCGGGGGCAGCGGCCCGCCCGGCACCACCCTGGTGCACCATCACTATCCGGCCCCGGGGCTGGCGCACCATCCGCATCACCTGCCGCACCATCACCATCCGTACCAGCCGCAGTATTCCGGGGGCTACCACCATCCGCTGGACGGTGGCCCGGCCACGGGAGCCTCACACGATGACAGCGGCATCGAGCTGCAGGAAGAAGTAGAGCGCTCGAAGGTGCGTGTATCGTTCTTCCAGAGCAGCAAACCGCAATCAATCAGTCCGCCGGAGTCGCTGCACCTGTACGGTGGGCAAAGTTTGATCCATTTCGGTAACGGCGGCGGCAGCGGCGGTGACGGCGGCTATGATAACAACAACTCGCCGCTAGACACCTACATCACCTCGGCCGCGCTCAACCAGCAGTACGACGCGCTGTCCAGCCATCAGCAGCAGCAGCAGCACGCACACTTTCATCCGGATCACCGGGATCCCGA]
[+] EMBL BM655003 [CCGTGAAAAGAGTATCGTTCGGCTCGTCCAAAGGTTCGATGGTGGAAACGCTGGTGTTCGAGACGCCCACCCCCCTGCCAGAGCACGCCGAGCGGGAGTTCTTTCAGTCGCCGGCCGTGCTGGCCGGCGCCGGCCACACAACCGTGTACAGCGGGGGCAGCGGCCCGCCCGGCACCACCCTGGTGCACCATCACTATCCGGCCCCGGGGCTGGCGCACCATCCGCATCACCTGCCGCACCATCACCATCCGTACCAGCCGCAGTATTCCGGGGGCTACCACCATCCGCTGGACGGTGGCCCGGCCACGGGAGCCTCACACGATGACAGCGGCATCGAGCTGCAGGAAGAAGTAGAGCGCTCGAAGGTGCGTGTATCGTTCTTCCAGAGCAGCAAACCGCAATCAATCAGTCCGCCGGAGTCGCTGCACCTGTACGGTGGGCAAAGTTTGATCCATTTCGGTAACGGCGGCGGCAGCGGCGGTGACGGCGGCTATGATAACAACAACTCGCCGCTAGACACCTACATCACCTCGGCCGCGCTCAACCAGCAGTACGACGCGCTGTCCAGCCATCAGCAGCAGCAGCAGCACGCACACTTTCATCCGGATCACCGGGATCCCGA]
consensusID : consensus_7173#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 536 fasta sequence
[CTTGAATATTTTAAGCGAACGGTCCTCGCTGTGGTGTTTCTTGTTTTTTTTCCGTGGCACAGCGCTCTATACTGTTTCTTTCAAGGGTAGAGGGGTGGGAGGGAGATAGCAACATTTGGCAGAGTAACAGGTTTCTCGTAGTCGGAGATGGAGTTGGAACGGCTAGGCGCTTTTTAAATCAAATGTGTGAATAGGCTCCATTTCAGCTCCAAACGCCTCCTGCAAACTGTTGCTTGTGCCCTCACTTACGAGACAAGCTTGGGAGTGGTACTTACAGGCAGGATTAAAGTGTGTGTGTGTGTGTTTGCACGCTCGGATGGAACCGTCAATGTGAGTCACAGTAGAGCGCTCGAAGGTGCGTGTATCGTTCTTCCAGAGCAGCAAACCGCAATCAATCAGTCCGCCGGAGTCGCTGCACCTGTACGGTGGGGCAAAGTTGATTCCATTTTCGGTAACGGCGGCGGCAGCGGCGGTGACGGCGGCTATGATAACAACAACTCGCCGCTAGACACCTACATCACCTCGGGCGCGCTCAA]
[+] EMBL BM608684 [CTTGAATATTTTAAGCGAACGGTCCTCGCTGTGGTGTTTCTTGTTTTTTTTCCGTGGCACAGCGCTCTATACTGTTTCTTTCAAGGGTAGAGGGGTGGGAGGGAGATAGCAACATTTGGCAGAGTAACAGGTTTCTCGTAGTCGGAGATGGAGTTGGAACGGCTAGGCGCTTTTTAAATCAAATGTGTGAATAGGCTCCATTTCAGCTCCAAACGCCTCCTGCAAACTGTTGCTTGTGCCCTCACTTACGAGACAAGCTTGGGAGTGGTACTTACAGGCAGGATTAAAGTGTGTGTGTGTGTGTTTGCACGCTCGGATGGAACCGTCAATGTGAGTCACAGTAGAGCGCTCGAAGGTGCGTGTATCGTTCTTCCAGAGCAGCAAACCGCAATCAATCAGTCCGCCGGAGTCGCTGCACCTGTACGGTGGGGCAAAGTTGATTCCATTTTCGGTAACGGCGGCGGCAGCGGCGGTGACGGCGGCTATGATAACAACAACTCGCCGCTAGACACCTACATCACCTCGGGCGCGCTCAA]
consensusID : consensus_7173#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 258 fasta sequence
[CCAGAAATCGGCACGAGGNTGNAATATCGTGACGACGTTGCATCTCTTGGTCCGGTTCCTGTGGCGCTCCTGCGAGGTGAACGTAGTAGAGCGCTCGAAGGTGCGTGTATCGTTCTTCCAGAGCAGCAAACCGCAAGTCAATCAGTCCTGCCAGGAGTTCGCTGCACCGTGTACCGGTGGGCAAAGTTTTGAGTCCAGGTGTTCGGGTAACGGACGGCGGCAGCGGCCGGATGACGGGCAGGGGCGTATTGATAACAA]
[+] EMBL BX468744 [CCAGAAATCGGCACGAGGNTGNAATATCGTGACGACGTTGCATCTCTTGGTCCGGTTCCTGTGGCGCTCCTGCGAGGTGAACGTAGTAGAGCGCTCGAAGGTGCGTGTATCGTTCTTCCAGAGCAGCAAACCGCAAGTCAATCAGTCCTGCCAGGAGTTCGCTGCACCGTGTACCGGTGGGCAAAGTTTTGAGTCCAGGTGTTCGGGTAACGGACGGCGGCAGCGGCCGGATGACGGGCAGGGGCGTATTGATAACAA]
consensusID : consensus_7173#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 174 fasta sequence
[GCAGAATCGGCCGAGGAATNTCGTGACGACGTGCATCTTTGGTCCTGGTTCCTGTGGCGCTCCTGCGAGGTGAACGTAGTAGAGCGCTCGAAGGTGCTGTGTATCGGTTCTTCCAGATGCAGCAAACCGGCAAAATGTCAAANTTTCAAGTCTCACGGGCCCGGNGAAAGTTNN]
[+] EMBL BX469684 [GCAGAATCGGCCGAGGAATNTCGTGACGACGTGCATCTTTGGTCCTGGTTCCTGTGGCGCTCCTGCGAGGTGAACGTAGTAGAGCGCTCGAAGGTGCTGTGTATCGGTTCTTCCAGATGCAGCAAACCGGCAAAATGTCAAANTTTCAAGTCTCACGGGCCCGGNGAAAGTTNN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7173#0 ------------------------------------------------------------
consensus_7173#4 ------------------------------------------------------------
consensus_7173#3 ------------------------------------------------------------
consensus_7173#1 CCGTGAAAAGAGTATCGTTCGGCTCGTCCAAAGGTTCGATGGTGGAAACGCTGGTGTTCG 60
consensus_7173#2 --------CTTGAATATTTTAAGCGAACGGTCCTCGCTGTGGTGTTTCTTGTTTTTTTTC 52
consensus_7173#0 ------------------------------------------------------------
consensus_7173#4 ------------------------------------------------------------
consensus_7173#3 ------------------------------------------------------------
consensus_7173#1 AGACGCCCACCCCCCTGCCAGAGCACGCCGAGCGGGAGTTCTTTCAGTCGCCGGCCGTGC 120
consensus_7173#2 CGTGGCACAGCGCTCTATACTGTTTCTTTCAAGGGTAGAGGGGTGGGAGGGAGATAGCAA 112
consensus_7173#0 ------------------------------------------------------------
consensus_7173#4 ------------------------------------------------------------
consensus_7173#3 ------------------------------------------------------------
consensus_7173#1 TGGCCGGCGCCGGCCACACAACCGTGTACAGCGGGGGCAGCGGCCCGCCCGGCACCACCC 180
consensus_7173#2 CATTTGGCAG-AGTAACAGGTTTCTCGTAGTCGGAGATGGAGTTGGAACGGCTAGGCGCT 171
consensus_7173#0 ------------------------------------------------------------
consensus_7173#4 ------------------------------------------------------------
consensus_7173#3 ------------------------------------------------------------
consensus_7173#1 TGGTGCACCATCACTATCCGGCCCCGGGGCTGGCGCACCATCCGCATCACCTGCCGCACC 240
consensus_7173#2 TTTTAAATCAAATGTGTGAATAGGCTCCATTTCAGCTCCAAACGCCTCCTGCAAACTGTT 231
consensus_7173#0 --------------------------------------------------------CCGG 4
consensus_7173#4 -------------------------------------GCAGAATCGGCCGAGGAATNTCG 23
consensus_7173#3 -------------------------------CCAGAAATCGGCACGAGGNTGNAATATCG 29
consensus_7173#1 ATCACCATCCGTACCAGCCGCAGTATTCCGGGGGCTACCACCATCCGCTGGACGGTGGCC 300
consensus_7173#2 GCTTGTGCCCTCACTTACGAGACAAGCTTGGGAGTGGTACTTACAGGCAGGATTAAAGTG 291
consensus_7173#0 TGACGACGT-GCATCTTTGGTCC-GGTTCCTGTGGCGCTCCTGCGAGGTGAA-CGTAGTA 61
consensus_7173#4 TGACGACGT-GCATCTTTGGTCCTGGTTCCTGTGGCGCTCCTGCGAGGTGAA-CGTAGTA 81
consensus_7173#3 TGACGACGTTGCATCTCTTGGTCCGGTTCCTGTGGCGCTCCTGCGAGGTGAA-CGTAGTA 88
consensus_7173#1 CGGCCACG--GGAGCCTCA--CACGATGACAGCGGCA-TCGAGCTGCAGGAA--GAAGTA 353
consensus_7173#2 TGTGTGTGT-GTGTTTGCACGCTCGG-----ATGGAA--CCGTCAATGTGAGTCACAGTA 343
* * * * ** * * ** ****
consensus_7173#0 GAGCGCTCGAAGGTGC-GTGTATCG-TTCTTCCAGA-GCAGCAAACCG-CAATCAATCAG 117
consensus_7173#4 GAGCGCTCGAAGGTGCTGTGTATCGGTTCTTCCAGATGCAGCAAACCGGCAAAATGTCAA 141
consensus_7173#3 GAGCGCTCGAAGGTGC-GTGTATCG-TTCTTCCAGA-GCAGCAAACCGCAAGTCAATCAG 145
consensus_7173#1 GAGCGCTCGAAGGTGC-GTGTATCG-TTCTTCCAGA-GCAGCAAACCG-CAATCAATCAG 409
consensus_7173#2 GAGCGCTCGAAGGTGC-GTGTATCG-TTCTTCCAGA-GCAGCAAACCG-CAATCAATCAG 399
**************** ******** ********** *********** * ***
consensus_7173#0 TCCGCC---GGAGTCGCTGCACCT-GT-ACGGTGGGCAAAGTTTGATCCATTT-CGGTAA 171
consensus_7173#4 ANTTTC---AA----GTCTCACGG-GC-CCGGNG---AAAGTTNN--------------- 174
consensus_7173#3 TCCTGCCAGGAGTTCGCTGCACCGTGTACCGGTGGGCAAAGTTTTGA--GTCC-AGGTGT 202
consensus_7173#1 TCCGCC---GGAGTCGCTGCACCT-GT-ACGGTGGGCAAAGTTTGATCCATTT-CGGTAA 463
consensus_7173#2 TCCGCC---GGAGTCGCTGCACCT-GTACGGTGGGGCAAAGTTGATTCCATTTTCGGTAA 455
* * *** * * * ******
consensus_7173#0 CGGCGGCGGCAGCGGCGGTGACGGCGGCTATGATAACAACAACTCGCCGCTAGACACCTA 231
consensus_7173#4 ------------------------------------------------------------
consensus_7173#3 TCGGGTAACGGACGGCGGCAGCGGCCGGATGACGGGCAGGGGCGTATTGATAACAA---- 258
consensus_7173#1 CGGCGGCGGCAGCGGCGGTGACGGCGGCTATGATAACAACAACTCGCCGCTAGACACCTA 523
consensus_7173#2 CGGCGGCGGCAGCGGCGGTGACGGCGGCTATGATAACAACAACTCGCCGCTAGACACCTA 515
consensus_7173#0 CATCACCTCGGCCGCGCTCAACCAGCAGTACGACGCGCTGTCCAGCCATCAGCAGCAGCA 291
consensus_7173#4 ------------------------------------------------------------
consensus_7173#3 ------------------------------------------------------------
consensus_7173#1 CATCACCTCGGCCGCGCTCAACCAGCAGTACGACGCGCTGTCCAGCCATCAGCAGCAGCA 583
consensus_7173#2 CATCACCTCGGGCGCGCTCAA--------------------------------------- 536
consensus_7173#0 GCAGCACGCACACTTTCATCCGGACCACCGGGATCCCGACATGGCGGCTGTCTACGGAGG 351
consensus_7173#4 ------------------------------------------------------------
consensus_7173#3 ------------------------------------------------------------
consensus_7173#1 GCAGCACGCACACTTTCATCCGGATCACCGGGATCCCGA--------------------- 622
consensus_7173#2 ------------------------------------------------------------
consensus_7173#0 TGCCAACGTGCCGCCAACGGCCTTTAACCGACAAATGAGTACCGAGTCAGGCTGGGACAA 411
consensus_7173#4 ------------------------------------------------------------
consensus_7173#3 ------------------------------------------------------------
consensus_7173#1 ------------------------------------------------------------
consensus_7173#2 ------------------------------------------------------------
consensus_7173#0 TCCATTCAGACCGGGCGGCGACCTGTCGAGGGAGGCGGACGAAATAGTCAATCTGATCAA 471
consensus_7173#4 ------------------------------------------------------------
consensus_7173#3 ------------------------------------------------------------
consensus_7173#1 ------------------------------------------------------------
consensus_7173#2 ------------------------------------------------------------
consensus_7173#0 AGGTGGCAAACCGATCACACCAACCGGCGACCAAAGTTTAGTGAACGGCAGCACGCCTAA 531
consensus_7173#4 ------------------------------------------------------------
consensus_7173#3 ------------------------------------------------------------
consensus_7173#1 ------------------------------------------------------------
consensus_7173#2 ------------------------------------------------------------
consensus_7173#0 GGACAGCCACAGCACCGACGACCCGGACACGACGGGTTGTGGACGGTGCGGTAGCAAAGC 591
consensus_7173#4 ------------------------------------------------------------
consensus_7173#3 ------------------------------------------------------------
consensus_7173#1 ------------------------------------------------------------
consensus_7173#2 ------------------------------------------------------------
consensus_7173#0 ACGAGGCCTCGCAGCTGCAGGCGGCGGCGGCCCAGCAGCACGACACCGATCAGCAACCAG 651
consensus_7173#4 ------------------------------------------------------------
consensus_7173#3 ------------------------------------------------------------
consensus_7173#1 ------------------------------------------------------------
consensus_7173#2 ------------------------------------------------------------
consensus_7173#0 GTGATACCCGGTCCCCAGTCCGCGTCGC 679
consensus_7173#4 ----------------------------
consensus_7173#3 ----------------------------
consensus_7173#1 ----------------------------
consensus_7173#2 ----------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||