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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7174#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1198 fasta sequence
[CCGCCCACGCGTCCGGTTTTGTCTTGTTCCTTGGTGCAAGGTGGTGCCGGTATTATCCCAAATTGCGTAAAGCGAGCGCAGTTTTCGATAAGTTTTCTTTGCCGATCGAATCCCAGACAGGATGACTATCAGCAATTTGATACGTTCACGCTGCTCGCTAGCTGCCGCTAAATCGTTTCTGGAGAACGTGAAATCATTCTCCAGCCATGCAACGTTTGCGGAGCACAAACAGTTGGAAAAGATTCGCAACATCGGCATCTCGGCACACATCGACAGCGGCAAGACGACGCTGACCGAGCGCATCCTGTTCTACACCGGGCGCATCAAGGAGATGCACGAGGTGAAGGGCAAGGACAACGTGGGCGCTACGATGGACTCGATGGAGCTGGAGCGGCAGCGCGGCATCACGATCCAGTCGGCCGCGACGTACACGATCTGGAAGGATCACAACATCAACATCATCGATACGCCCGGACACGTCGACTTTACGGTCGAGGTGGAGCGTGCCCTGCGCGTGCT-GGACGGTGCGGTGCTGGTGCTGTGCAGTGTCGGCGGTGTCCAGAGCCAAACGCTCACCGTGAACCGGCAGATGAAGCGCTACAATGTGCCGTGCTTGGCGTTCATCAACAAGCTCGACCGGTCCGGGACCAATCCGTACCGGGTGCTGGGCCAGATGCGCTCCAAGCTGAACCACAACGCAGCGTTCGTGCAGCTGCCGATTGGGGTGGAAAGTAACTGCAAGGGTGTGATCGACCTCGTCAAACAGCGTGCACTGTACTTCGAGGAACCGTATGGGCTGAAAATACGGGAGGATGAAATTCCGGCCGATATGCGCACGGAGAGCGCGGAACGAAGACAGGAACTGATCGAACATTTATCGAACGTGGACGAAAAGATTGGTGAACTGTTCCTGGAGGAGCGGGAGGCGACGGTGGACGACATTATGGGTGCGATTCGACGGTCGACGCTGAAGCGTGCCTTTACGCCAGTGCTCGTCGGTACGGCGCTCAAGAATAAGGGCGTTCAGCCGCTGCTGGATGCGGTGCTGGACTATCTGCCCCACCCGGGAGAGGTCGAGAATGTGGCGCTGGTCGAGAAGAAGGACGAAGAACCGCAGAAGGTGCCGCTGAATCCGGCTCGCGATGGAAAGGATCCGTTCGTTGGGTTAGCGTTCAAGCTGGAGGCTGGCCGGTTCGGT]
[+] EMBL BM634075 [CCGCCCACGCGTCCGGTTTTGTCTTGTTCCTTGGTGCAAGGTGGTGCCGGTATTATCCCAAATTGCGTAAAGCGAGCGCAGTTTTCGATAAGTTTTCTTTGCCGATCGAATCCCAGACAGGATGACTATCAGCAATTTGATACGTTCACGCTGCTCGCTAGCTGCCGCTAAATCGTTTCTGGAGAACGTGAAATCATTCTCCAGCCATGCAACGTTTGCGGAGCACAAACAGTTGGAAAAGATTCGCAACATCGGCATCTCGGCACACATCGACAGCGGCAAGACGACGCTGACCGAGCGCATCCTGTTCTACACCGGGCGCATCAAGGAGATGCACGAGGTGAAGGGCAAGGACAACGTGGGCGCTACGATGGACTCGATGGAGCTGGAGCGGCAGCGCGGCATCACGATCCAGTCGGCCGCGACGTACACGATCTGGAAGGATCACAACATCAACATCATCGATACGCCCGGACATGTCGACTTTACGGTCGAGGTGGAGCGTGCCCTGCGCGTGCT GGACGGTGCGGTGCTGGTGCTGTGCAGTGTCGGCGGTGTCCAGAGCCAAACGCTCACCGTGAACCGGCAGATGAAGCGC ]
[+] EMBL BM588540 [ ccgGTTCCTTGGTGCAAGGTGGTGCCGGTATTATCCCAAATTGCGTAAAACGAGCGCAGTTTTCGATAAGTTTTCTTTGCCGATCGAATCCCAGACAAGATGACTATCAGCAATTTGATACGTTCGCGCTGCTCGCTAGCTGCCGCTAAATCGTTTCTGGAGAACGTGAAATCATTCTCCAGCCATGCAACGTTTGCGGAGCACAAGCAGCTGGAAAAGATTCGCAACATCGGCATCTCGGCACACATCGACAGCGGCAAGACGACGCTAACCGAGCGCATCCTGTTCTACACCGGGCGCATCAAGGAGATGCACGAGGTGAAGGGCAAGGACAACGTGGGCGCTACGATGGACTCGATGGAGCTGGAGCGGCAGCGCGGCATCACGATCCAGTCGGCCGCGACGTACACGATCTGGAAGGATCACAACATCAACATCATCGATACGCCCGGGCACGTCGACTTTACGGTCGAGGTGGAGCGTGCCCTGCGCGTGCTGGGACGGTGCGGTGCTGGTGCTGTGCAGTGTCGGCGGTGTCCAGAGCCAAACGCTCACCGTGAACCGGCAGATGAAGCGCTACA ]
[+] EMBL BM597661 [ ccgGGTGCCGGTATTATCCCAAATTGCGTAAAGCGAGCGCAGTTTTCGATAAGTTTTCTTTGCCGATCGAATCCCAGACAGGATGACTATCAGCAATTTGATACGTTCACGCTGCTCGCTAGCTGCCGCTAAATCGTTTCTGGAGAACGTGAAATCATTCTCCAGCCATGCAACGTTTGCGGAGCACAAACAGTTGGAAAAGATTCGCAACATCGGCATCTCGGCACACATCGACAGCGGCAAGACGACGCTGACCGAGCGCATCCTGTTCTACACCGGGCGCATCAAGGAGATGCACGAGGTGAAGGGCAAGGACAACGTGGGCGCTACGATGGACTCGATGGAGCTGGAGCGGCAGCGCGGCATCACGATCCAGTCGGCCGCGACGTACACGATCTGGAAGGATCACAACATCAACATCATCGATACGCCCGGACACGTCGACTTTACGGTCGAGGTGGAGCGTGCCCTGCGCGTGCT GGACGGTGCGGTGCTGGTGCTGTGCAGTGTCGGCGGTGTCCAGAGCCAAACGCTCACCGTGAACCGGCAGATGAAGCGCTACAATGTGCCGTGCTTGGCGTTCATCAACAAGCTCGACCGGTCCGGGACCAATCCGTACCGGGTGCTGGGCCAGATGCGCTCCAAGCTGAACCACAACGCAGCGTT ]
[+] EMBL BM575099 [ ccgGCTGTGCAGTGTCGGCGGTGTCCAGAGCCAAACGCTCACCGTGAACCGGCAGATGAAGCGCTACAATGTGCCGTGCTTGGCGTTCATCAACAAGCTCGACCGGTCCGGGGCCAATCCGTACCGGGTGCTGGGCCAGATGCGCTCCAAGCTGAACCACAACGCAGCGTTCGTGCAGCTGCCGATTGGGGTGGAAAGTAACTGCAAGGGTGTGATCGACCTCGTCAAACAGCGTGCACTGTACTTCGAGGAACCGTATGGGCTGAAAATACGGGAGGATGAAATTCCGGCCGATATGCGCACGGAGAGCGCGGAACGAAGACAGGAACTGATCGAACATTTATCGAACGTGGACGAAAAGATTGGTGAACTGTTCCTGGAGGAGCGGGAGGCGACGGTGGACGACATTATGGGTGCGATTCGACGGTCGACGCTGAAGCGTGCCTTTACGCCAGTGCTCGTCGGTACGGCGCTCAAGAATAAGGGCGTTCAGCCGCTGCTGGATGCGGTGCTGGACTATCTGCCCCACCCGGGAGAGGTCGAGAATGTGGCGCTGGTCGAGAAGAAGGACGAAGAACCGCAGAAGGTGCCGCTGAATCCGGCTCGCGATGGAAAGGATCCGTTCGTTGGGTTAGCGTTCAAGCTGGAGGCTGGCCGGTTCGGT]
consensusID : consensus_7174#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 651 fasta sequence
[CCGCCCACGCGTCCGGGACAATGTGGGCGCTACGATGGACTCGATGGAGCTGGAGCGGCAGCGCGGCATCACGATCCAGTCGGCCGCGACGTACACGATCTGGAAGGATCACAACATCAACATCATCGATACGCCCGGGCACGTCGACTTTACGGTCGAGGTGGAGCGTGCCCTGCGCGTGCTGGACGGTGCGGTGCTGGTGCTGTGCAGTGTCGGCGGTGTCCAGAGCCAAACGCTCACCGTGAACCGGCAGATGAAGCGCTACAATGTGCCGTGCTTGGCGTTCATCAACAAGCTCGACCGGTCCGGGGCCAATCCGTACCGGGTGCTGGGCCAGATGCGCTCCAAGCTGAACCACAACGCAGCGTTCGTGCAGCTGCCGATTGGGGTGGAAAGTAACTGCAAGGGTGTGATCGACCTCGTGAAACAGCGTGCACTGTACTTCGAGGAACCGTATGGGCTGAAAATACGGGAGGATGAAATTCCGGCCGATATGCGCACGGAGAGCGCGGAACGAAGACAGGAACTGATCGAACATTTATCGAACGTGGACGAAAAGATTGGTGAACTGTTCCTGGAGGAGCGGGAGGCGACGGTGGAAGACATTATGGGTGCGATTCGACGGTCGACGCTGAAGCGTGCCTTTACGCC]
[+] EMBL BM620614 [CCGCCCACGCGTCCGGGACAATGTGGGCGCTACGATGGACTCGATGGAGCTGGAGCGGCAGCGCGGCATCACGATCCAGTCGGCCGCGACGTACACGATCTGGAAGGATCACAACATCAACATCATCGATACGCCCGGGCACGTCGACTTTACGGTCGAGGTGGAGCGTGCCCTGCGCGTGCTGGACGGTGCGGTGCTGGTGCTGTGCAGTGTCGGCGGTGTCCAGAGCCAAACGCTCACCGTGAACCGGCAGATGAAGCGCTACAATGTGCCGTGCTTGGCGTTCATCAACAAGCTCGACCGGTCCGGGGCCAATCCGTACCGGGTGCTGGGCCAGATGCGCTCCAAGCTGAACCACAACGCAGCGTTCGTGCAGCTGCCGATTGGGGTGGAAAGTAACTGCAAGGGTGTGATCGACCTCGTGAAACAGCGTGCACTGTACTTCGAGGAACCGTATGGGCTGAAAATACGGGAGGATGAAATTCCGGCCGATATGCGCACGGAGAGCGCGGAACGAAGACAGGAACTGATCGAACATTTATCGAACGTGGACGAAAAGATTGGTGAACTGTTCCTGGAGGAGCGGGAGGCGACGGTGGAAGACATTATGGGTGCGATTCGACGGTCGACGCTGAAGCGTGCCTTTACGCC]
consensusID : consensus_7174#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 596 fasta sequence
[CGACCCACGCGTCCGAGGTGGTGCCGGTATTATCCCAAATTGCGTAAAGCGAGCGCAGTTTTCGATAAGTTTTCTTTGCCGATCGAATCCCAGACAGGATGACTATCAGCAATTTGATACGTTCGCGCTGCTCGCTAGCTGCCGCTAAATCGTTTCTGGAGAACGTGAAATCATTCTCCAGCCATGCAACGTTTGCGGAGCACAAGCAGCTGGAAAAGATTCGCAACATCGGCATCTCGGCACACATCGACAGCGGCAAGACGACGCTGACCGAGCGCATCCTGTTCTACACCGGGCGCATCAAGGAGATGCACGAGGTGAAGGGCAAGGACAACGTGGGCGCTACGATGGACTCGATGGAGCTGGAGCGGCAGCGTGGTATCACGATCCAGTCGGCCGCGACGTACACTGATCTGGAAGGATCACAACATCAACATCATCGATACGCCCGGGCACGTCGACTTTACGGTCGAGGTGGAGCGTGCCCTGCGCGTGCTGGGACGGTGCGGTGCTGGTGCTGTGCAGTGGTCGGCGGTGTCCAGAGCCAAACGCTCACCGTGAACCGGCAGATGAAGCGCTACAATGTGCCGGTGCTT]
[+] EMBL BM576538 [CGACCCACGCGTCCGAGGTGGTGCCGGTATTATCCCAAATTGCGTAAAGCGAGCGCAGTTTTCGATAAGTTTTCTTTGCCGATCGAATCCCAGACAGGATGACTATCAGCAATTTGATACGTTCGCGCTGCTCGCTAGCTGCCGCTAAATCGTTTCTGGAGAACGTGAAATCATTCTCCAGCCATGCAACGTTTGCGGAGCACAAGCAGCTGGAAAAGATTCGCAACATCGGCATCTCGGCACACATCGACAGCGGCAAGACGACGCTGACCGAGCGCATCCTGTTCTACACCGGGCGCATCAAGGAGATGCACGAGGTGAAGGGCAAGGACAACGTGGGCGCTACGATGGACTCGATGGAGCTGGAGCGGCAGCGTGGTATCACGATCCAGTCGGCCGCGACGTACACTGATCTGGAAGGATCACAACATCAACATCATCGATACGCCCGGGCACGTCGACTTTACGGTCGAGGTGGAGCGTGCCCTGCGCGTGCTGGGACGGTGCGGTGCTGGTGCTGTGCAGTGGTCGGCGGTGTCCAGAGCCAAACGCTCACCGTGAACCGGCAGATGAAGCGCTACAATGTGCCGGTGCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7174#0 CCGCCCACGCGTCCGGTTTTGTCTTGTTCCTTGGTGCAAGGTGGTGCCGGTATTATCCCA 60
consensus_7174#1 ------------------------------------------------------------
consensus_7174#2 ------------------------------------------------------------
consensus_7174#0 AATTGCGTAAAGCGAGCGCAGTTTTCGATAAGTTTTCTTTGCCGATCGAATCCCAGACAG 120
consensus_7174#1 ------------------------------------------------------------
consensus_7174#2 ------------------------------------------------------------
consensus_7174#0 GATGACTATCAGCAATTTGATACGTTCACGCTGCTCGCTAGCTGCCGCTAAATCGTTTCT 180
consensus_7174#1 ------------------------------------------------------------
consensus_7174#2 ------------------------------------------------------------
consensus_7174#0 GGAGAACGTGAAATCATTCTCCAGCCATGCAACGTTTGCGGAGCACAAACAGTTGGAAAA 240
consensus_7174#1 ------------------------------------------------------------
consensus_7174#2 ------------------------------------------------------------
consensus_7174#0 GATTCGCAACATCGGCATCTCGGCACACATCGACAGCGGCAAGACGACGCTGACCGAGCG 300
consensus_7174#1 ------------------------------------------------------------
consensus_7174#2 ------------------------------------------------------------
consensus_7174#0 CATCCTGTTCTACACCGGGCGCATCAAGGAGATGCACGAGGTGAAGGGCAAGGACAACGT 360
consensus_7174#1 ------------------------------------CCGCCCACGCGTCCGGGACAATGT 24
consensus_7174#2 ------------------------------------CGACCCACGCGTCCGAGGTGGTGC 24
* * * * *
consensus_7174#0 GGGCGCTACGATGGACTCGATGGAGCTGGAGCGGCAGCGCGGCATCACGATCCAGTCGGC 420
consensus_7174#1 GGGCGCTACGATGGACTCGATGGAGCTGGAGCGGCAGCGCGGCATCACGATCCAGTCGGC 84
consensus_7174#2 CGGTATTATCCCAAATTGCGTAAAGCGAGCGCAGT---------TTTCGATA-AGTTTTC 74
** ** * * * *** * ** * * **** *** *
consensus_7174#0 CGCGACGTACACGATCTGGA-AGGATCACAACATCAACATCATCGATACGCCCGGACACG 479
consensus_7174#1 CGCGACGTACACGATCTGGA-AGGATCACAACATCAACATCATCGATACGCCCGGGCACG 143
consensus_7174#2 TTTGCCGATCGAATCCCAGACAGGATGAC--TATCAGCAAT-TTGATACGTTCGCGCTGC 131
* ** * * ** ***** ** **** ** * ****** ** *
consensus_7174#0 TCGACTTTACGGTCGAGGTGGAGCGTGCCCTGCGCGTGCTGGACGGTGCGGTGCTGGTGC 539
consensus_7174#1 TCGACTTTACGGTCGAGGTGGAGCGTGCCCTGCGCGTGCTGGACGGTGCGGTGCTGGTGC 203
consensus_7174#2 TCG--CTAGCTGCCG--CTAAATCGTTTCTGGAGAACGTGAAATCATTC-----TCCAGC 182
*** * * * ** * * *** * * * * * * * * **
consensus_7174#0 TGTGCAGTGTCGGCGGTGTCCAGAGCCAAACGCTCACCGTGAACCGGCAGATGAAGCGCT 599
consensus_7174#1 TGTGCAGTGTCGGCGGTGTCCAGAGCCAAACGCTCACCGTGAACCGGCAGATGAAGCGCT 263
consensus_7174#2 CATGCAACGTTTGCGGAGCACA-AGC---------------AGCTGG-AAAAGATTCGCA 225
**** ** **** * ** *** * * ** * * ** ***
consensus_7174#0 ACAATGTGCCGTGCTTGGCGTTCATCAACAAGCTCGACCGGTCCGGGACCAATCCGTACC 659
consensus_7174#1 ACAATGTGCCGTGCTTGGCGTTCATCAACAAGCTCGACCGGTCCGGGGCCAATCCGTACC 323
consensus_7174#2 ACATCGG--CAT-CTCGGCACACATCGACAGCGGCAAGACGACGCTGACCGAGC-GCATC 281
*** * * * ** *** **** *** * * * * * ** * * * * *
consensus_7174#0 GGGTGCTGGGCCAGATGCGCTCCAAGCTGAACCACAACGCAGCGTTCGTGCAGCTGCCGA 719
consensus_7174#1 GGGTGCTGGGCCAGATGCGCTCCAAGCTGAACCACAACGCAGCGTTCGTGCAGCTGCCGA 383
consensus_7174#2 CTGTTCTACACCGG--GCGCATCAAGGAGATGCACGAGGTGAAG--GGCAAGGACAACGT 337
** ** ** * **** **** ** *** * * * * * **
consensus_7174#0 TTGGGGTGGAAAGTAACTGCAAGGGTGTGATCGACCTCGTCAAACAGCG-TGCACTGTAC 778
consensus_7174#1 TTGGGGTGGAAAGTAACTGCAAGGGTGTGATCGACCTCGTGAAACAGCG-TGCACTGTAC 442
consensus_7174#2 GGGCGCTACGATGGACTCGATGGAGCTGGAGCGGCAGCGTGGTATCACGATCCAGTCGGC 397
* * * * * * * * * ** ** * *** * ** * ** * *
consensus_7174#0 TTCGAGGAACCGTATGGGCTGAAAATACGGGAGGATGAAATTCCGGCCGATATGCGCACG 838
consensus_7174#1 TTCGAGGAACCGTATGGGCTGAAAATACGGGAGGATGAAATTCCGGCCGATATGCGCACG 502
consensus_7174#2 CGCGACGTACACT--GATCTGGAAGGATCACAACATCAACATC--ATCGATA--CGCCCG 451
*** * ** * * *** ** * * ** ** ** ***** *** **
consensus_7174#0 GAGAGCGCGGAACGAAGACAGGAACTGATCGAACATTTATCGAACGTGGACGAAAAGATT 898
consensus_7174#1 GAGAGCGCGGAACGAAGACAGGAACTGATCGAACATTTATCGAACGTGGACGAAAAGATT 562
consensus_7174#2 GGCACGTCGACTTTACGGTCGA----GGTGGAGCGTGCCCTGCGCGTGCTGGGACGGTGC 507
* * ** * * * * * ** * * * **** * * *
consensus_7174#0 GGTGAACTGTTCCTGGAGGAGCGGGAGGCGACGGTGGACGACA--TTATGGGTGCGATTC 956
consensus_7174#1 GGTGAACTGTTCCTGGAGGAGCGGGAGGCGACGGTGGAAGACA--TTATGGGTGCGATTC 620
consensus_7174#2 GGTG--CTGGTGCTGT-GCAGTGGTCGGCGGTGTCCAGAGCCAAACGCTCACCGTGAACC 564
**** *** * *** * ** ** **** * * ** * * ** *
consensus_7174#0 GACGGTCGA--CGCTGAAGCGTGCCTTTACGCCAGTGCTCGTCGGTACGGCGCTCAAGAA 1014
consensus_7174#1 GACGGTCGA--CGCTGAAGCGTGCCTTTACGCC--------------------------- 651
consensus_7174#2 GGCAGATGAAGCGCTACAATGTGCCGGTGCTT---------------------------- 596
* * * ** **** * ***** * *
consensus_7174#0 TAAGGGCGTTCAGCCGCTGCTGGATGCGGTGCTGGACTATCTGCCCCACCCGGGAGAGGT 1074
consensus_7174#1 ------------------------------------------------------------
consensus_7174#2 ------------------------------------------------------------
consensus_7174#0 CGAGAATGTGGCGCTGGTCGAGAAGAAGGACGAAGAACCGCAGAAGGTGCCGCTGAATCC 1134
consensus_7174#1 ------------------------------------------------------------
consensus_7174#2 ------------------------------------------------------------
consensus_7174#0 GGCTCGCGATGGAAAGGATCCGTTCGTTGGGTTAGCGTTCAAGCTGGAGGCTGGCCGGTT 1194
consensus_7174#1 ------------------------------------------------------------
consensus_7174#2 ------------------------------------------------------------
consensus_7174#0 CGGT 1198
consensus_7174#1 ----
consensus_7174#2 ----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||